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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0403300 |
| Transcript ID | LotjaGi1g1v0403300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Tocopherol cyclase; TAIR: AT4G32770.1 tocopherol cyclase, chloroplast / vitamin E deficient 1 (VTE1) / sucrose export defective 1 (SXD1); Swiss-Prot: sp|Q94FY7|TOCC_ARATH Tocopherol cyclase, chloroplastic; TrEMBL-Plants: tr|A0A072V2G5|A0A072V2G5_MEDTR Tocopherol cyclase; Found in the gene: LotjaGi1g1v0403300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:89233534..89239386) extracted from Lotus japonicus Gifu genome v1.2.
CAAGAATTAAGATGGATGTGTTCATATTCAATCTCATTAAATGAAATAGCACATTACTTGAAAACTCATCCAATCTTAGC TAGTGTGTGACACACCCCTCCTTCTATATTTGTTTTTACTTTTTAGTACGAGGATTATCAATTTCATTACCAAAATTATG CATTTTCAGATTCATCACAATACAATACAATACAATACACTGAAACTTGTCCATTTTGCTCTATCACTGAGTCTGTCATC ATCATCATTCATTCTCATCCATGGAAACCACCAAGCTCTGGAACTCTCCACACTTTCCTTTCTCCACCACCGCCAATGCC AATGCCAATGCCAGACCCACACACCGCGTTTCTCTCAAACTTCCATTTCCATCAACACCACCACCACCACCACCACCTTC CCGCCTCCACGTAGCTCCCATTGCGTACTCGCCAACACCACCCAATCGAGACCTTCGAACCCCTCATAGCGGGTAGGTTT TCATTTTATACTGTTCTATTGATTTCAATTCATGAATGAATGAATTGATTGATGATTGTTGTTGTTTAGGTACCATTTTG ATGGTTCAGCTCGGAAATTCTTTGAGGGTTGGTACTTCAAGGTGTCGATTCCGGAGCGGAGGCAGAGTTTCTGCTTCATG TATTCGGTGGAGAATCCTGCGTTTCCCAACCCATTGACGCCTTTGGAATCGGTTCAATATGGACCTAGGTTTACTGGTGT TGGGGTTCAGATTCTTGGTGCTGATGATAACTACATTTGCCAATACACTCCACAATCAAACAACTTCTGGGGGAGTAAGC ATTTTTTTCACTTTCTTCTTTAAATTGGTAAAAAAATAGAACTTGTTTTTATGTGAATTGTAAAATGCCTGATCATGTTC TGTGGATTTGAACTTGTAAATGTATAGGTAGGCATGAACTCTTATTGGGGAACACTTTCGTGGCGAAACCAAATTCAAAA CCTCCAAACAAGGAGGTTCCTCCTCAGGTTTGTATACTAACTGCTAATAGCTGTTACCTTTAGAATCCTTTGGAATTTCA GTGTTGATTTTTTTTTATTCTTGAGGTGGTTTGGTTGTTCAGTTTCAGTTTTTGTGATGTATGTTTGTTGAGTTTTAGGT GATTCTTTTTGGATGGCTTTCATTTTTTTTCTTCTTGTTAGAGTTATGCAGTGTGATACTCTCGTTATGTCTTACATTGG TTTTAATTTAAATGCTAGAATTGTGTAGTTTGATACTTCTCACAAGTCCCACATTACATGTTATACATATGCTGTGAGCC TTGTAAACCTTTTCTACATACAAACATCAATAAAACTGGTCTTTCGAGCTGTGGACATAGGTACATACACTGCGTGCCTA GCCACATTATATTGTGTGTCCTTTATCTTCTTGATTCTGGAAGATAAGAGGGTTGTTTGTAATAGGAGAAACTTTATCAG CCCTCGTGAGGGAAGAAACTAGATGACATGAAGTAAGCAGATAGGGAGTTGTTAGATTGACAGAATCTTGGAATTATTAG ATTTACATTGGCTAAGAATGTCACGTTCAGCATTGTCAATGAGAAAATTACTTTAAGTTTGATGAAGGTGTTATCTAATA TGTAGAAAAATCCATATGCTGCAAACAAAGTACACCTGATGCGCTGATTATTCGATGGGAGTAGATAATTTTGTGACTGA TCACATTAATGAGTTCAATACAATTCTGGTTCTGCATTATTAAATACGAAAAGCAGAGGGAGGAGCAGTTAAAAGGGTTA GAATTAGACCCAGGCCAAGGCAGATCAAAGTCCAAAGAGAACGGGAAATCCAAAAATAGGCAAGATATGATTTACTGGAA TTATGACAAAAAGGGGTCACCTTAAAAGCCAATGCAAGGAGCCAAATAAGAGTAATAAACATAAGAAGCAGAAAAGTGAT GAAAGTGAAAATGTTGCAACTAATGAAACTGCAATGTATTAAATTGTAACTTTTGACAGTCTGGTTGACTCATTGATTTT GGACTTGGTGTGTTATTCTGCACTATACCTTATTCTCATTATATCTTTGGAAAGTTTGGGAAGGTTCACCTCCAAGTCTT ATAATATCATTGTAAGAGGTGATGTTGGCATTAGTACCTGTAGTGGAACCCAATGGACATAGCACAATGTCAGATACATT ATTTCTTTACATATAAATATGATATTTGTAGGCCAGTTAGATTACATGACTGGTTATAACTTAGAGTGGGCTTCAGGAAA CAAGTCTTATTCTTTGTTTCTGCTTATATATGCTTCGTATTTGTTCATTTGTGTAGGAATTTAATAATAGAGTGCTGGAA GGTTTTCAAGTCACTCCCCTTTGGAATCAAGGTTTCATTTGCGATGATGGAAGGTGGAAGTTAGATTGCTTTTTAAGTAT TAGATTCTCTGGTTAATTTTTTTTCTTACTTGACAGTTGACACAAATTTTAATTATAGGTCAAATTATGTAGAAACAGTA AAGACGGCTCGTTGGGAATATAGTACACGCCCTGTATATGGATGGGGTGATGTTGGGTCCACACAGAAGTCTACTGCTGG CTGGCTTGCAGCTTTTCCTGTTTTTGAGCCACATTGGCAAATATGCATGGGTGGTGGATTGTCAACAGGCATGTGCTAGT TGTTCGGCTATTCGCTATTCAATCTTTTATTTATATCATGGTCTTGAATCCTACATTTACTTTTATTTCTGAACTGAAAC ATAATAATTTTGTTTGAACAATTATTATGAATCTATCACGGCACTGACAGCTGTATACTACTAATGTATTTTGCCTAAGT GATTGACATTTAGAGCCAGTTTGGATAAACTTCTTAATAAGCATTTATGGAGGAAGAAATTTAGAATGATCTTACAGTAA CTGAGTCAAACCCAACTTTTGCACCTTAAGTTTTCAGAAACTCCTTCATTTAACCTCCATGAGACCTGCCTCTAACTTTG TAAGGTTTTTTTTTTTCGTAAATTAAGAACCAAGTACTTATTTTAGTAAAAGAGTTCCCATAAACTAGAAGCTTTCCAAA CTGGGCCTTAATGCATATTTGGAAACCCAACTTGTTTTCATGTTAAATGAGAATTGCTTCTGATTGACGTGTAGAGCACA AATTTCTCTTTCTTGCTTCTACTTGGGAGAATTGATTTTGAATAAATGTAAAACTGATCCCAACAAGCTATTAGTCACCT GCTACCTACAAAATATTACACGTCGATAATAGTCATGCTGAAAGGATATATAATCATTTCTAGAACCATGAGGTGAATCA GGAAGGGGGGAGTATAATGCTATTTACACTTACAATGTCAATTTTGGACTAAGATTGGATTACTAGGCTCATATTTTGGT GAAGTACTTTTATGCTTTAAGAAGTAATCACTCTTGCTTGCACCTTGCAGTATTTATGTCCTCTTTCATTTTTCTTATAT TAATATTGAATCTCAGGTTGGATAGAGTGGGATGGCGAGAGGATTGAGTTTGAAAATGCCCCATCTTATTCAGAAAAGAA CTGGGGCGGAGGATTCCCAAGAAAGTGGTTTTGGGTAAGTAATATTTTTATTCATGAAAGTATATCTTCTAAAGTTCATT AGCACATCAATTCCATGGTTTGCTATGAATCTTAAGCCGTTTCTGATTGTATGTAATCAATTGCAAACCTTGTCTATTGA AAATTGTGGTTAAAATGTTTTATTTCTTCAGCATTATGTTTTATACTTCTAGAAAAATCAATTGTCTGTTAACAAGCTAT AGACAGCAAGCACATAAGTCATGCTTCATTAGGCCTTGGAGACTGCAGTAGATGGAGTCCTTTTGTATTGTTATATTGAC ATTCAATTATTCTCACCTTTGTTTGGATCAGTGTCTGTGCTTTTATATTTTTATGCATCTCAAATTGTTAATGTTTCGTA CAGGTTCAATGTAATGTTTTAGAAGGTGAGGGTGCTAGTGGAGAAATTGCACTTACAGCTGCTGGTGGATTGAGGCAAAT TCCTGGGATAACCGAGACCTTTGAAAATGCTGCACTGGTACCTTCATAAAGCATTTGGCTATAAATTTGATTTATTTCAT AAATTTATTACACCAGGAAATAAATTTAAGACTACCTCTGAAATAAATGGTGCTAGTCATGGGAATGACAAAAGGACCAG GACATATAACTAATTTGATTTCTCTTTTTGCCAAAATAACTGTCTCTGCTCTTGCTAGTTGTTTTCTTTGATAAAGACAA ACTCTTGGGTGAGTATAAATACAGTCTTTTAATCTCTTAAAATTTGTGCATAAATTGTATTACTGATACTTCACGGAAAC AATTGTCCGCTGCTTAAAATCATGAGTGATGAAAAGAGTGATGTTAATATTTCGTATGAAGTGTTTTAATTAGATTGGTA TTTCTTCTGAAATGTTCTAATTTGTATATCTAACGGTAGATGGTGCTTTCTTTCGTTTCACGTTGTGGTTATAAAATAAA AACATAATTTATGTTCTTCTTGTAAGAATTTTAGGGGTCTATTTGCCATCTTCTGTTGTTCACTGCATGCCATTAATCGT CCTCCTCTTGTTATTATTATTATGATTGACTTTTCTTAATTTTTACTATGTTGCAAACTGGTGCAGATTGGAGTTCATTA TGGTGGAAAATTTTATGAATTTGTGCCATGGAATGGTTTTGTTAACTGGGAAGTCACTCCTTGGGGTTATTGGTTTATGT CTGCAGACAATGGCAGTTATCTGGTAATTTTATAGTTTTGAATCTCATTTGAACTTATCAATATATAAACTATGGAGTCC TATTTGTTTTTAGAAAAAGTTTTAGTTTTCATTTCCAGTTTTGACTTTTAACTACTTTTTTTCACTTTGTTTCAAATTTC CTCAACAAAACTGAAAGAGAATGAAATAAAAATAGAAATAGAACCCAAACAAATCCTAAATTTATGCTTTGTGCAACATA GTTGAACTTCTCAATGCAGGAGAAAAATAATAATTTGATGGGACTTCTTTTGGCAAATGACATGAGTGTGTTTGTATTTA CGTTCAAGTTGGTCAAAAACTCATTCACTCCAACGACACAAGAGACATGATACATTTAAACTGTCTTGTAATGTACGCTG ACAGAAATCCGAACACACTATTGTGGCAGGTTGAATTAGAAGCAAAAACAGATGATCCCGGTACTCCATTGCGTGCGCCA ACATCAGAAGCAGGCCTTTCACAAGCTTGTAAAGACACATGTTTCGGAATTCTTACATTGAAAATATGGGAACGAAGATA TGATGGCAGCAAGGGGAAGGTGACTTGTTATTCGCACACATAAATTGTTCTTACATTCAATGTTTAATGGAACATGTTAA TGAAATGTTTGGTAAATGGCAGATCATATTGGACGTTTCAAGTGACATGGCAGCTCTAGAAGTTGGAGGAGGTCCATGGT TCAGCACTTGGAAAGGCAAGACGACAATGCCACCGGTCATTGGCCCTGCTCTTGGATTACCCGTAGACCTAGATGGCATT TTTAATGCGGTTCCTCTGTTTAAACCACCTGGTTTGTGATCAATTGGTTTATATCTTTCTTTCAGTTTGATTTGAAGTTT GTATAAACTCTCTTATAGCATGTTTGGTTTCACGGGTGGAATGATCCAGAATCACCTCTAGTTAGAAGCCATAAGTTTTT GTAGTTTGTAAGTAATCATATATAAATTATGTCAAATTGTGAAGCCAAACAGACATTTAGTGAAGGCAGGTATTCAGAGA AAAGTTCAATGTTTATATATAGAAAGATCAAAATGAAAAGAATATCTGTTTACAATAAGTTTTATTAATATAAAACTCTT TTTATTCCTCGGA
CDS sequence (LotjaGi1g1v0403300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAACCACCAAGCTCTGGAACTCTCCACACTTTCCTTTCTCCACCACCGCCAATGCCAATGCCAATGCCAGACCCAC ACACCGCGTTTCTCTCAAACTTCCATTTCCATCAACACCACCACCACCACCACCACCTTCCCGCCTCCACGTAGCTCCCA TTGCGTACTCGCCAACACCACCCAATCGAGACCTTCGAACCCCTCATAGCGGGTACCATTTTGATGGTTCAGCTCGGAAA TTCTTTGAGGGTTGGTACTTCAAGGTGTCGATTCCGGAGCGGAGGCAGAGTTTCTGCTTCATGTATTCGGTGGAGAATCC TGCGTTTCCCAACCCATTGACGCCTTTGGAATCGGTTCAATATGGACCTAGGTTTACTGGTGTTGGGGTTCAGATTCTTG GTGCTGATGATAACTACATTTGCCAATACACTCCACAATCAAACAACTTCTGGGGGAGTAGGCATGAACTCTTATTGGGG AACACTTTCGTGGCGAAACCAAATTCAAAACCTCCAAACAAGGAGGTTCCTCCTCAGGAATTTAATAATAGAGTGCTGGA AGGTTTTCAAGTCACTCCCCTTTGGAATCAAGGTTTCATTTGCGATGATGGAAGGTCAAATTATGTAGAAACAGTAAAGA CGGCTCGTTGGGAATATAGTACACGCCCTGTATATGGATGGGGTGATGTTGGGTCCACACAGAAGTCTACTGCTGGCTGG CTTGCAGCTTTTCCTGTTTTTGAGCCACATTGGCAAATATGCATGGGTGGTGGATTGTCAACAGGTTGGATAGAGTGGGA TGGCGAGAGGATTGAGTTTGAAAATGCCCCATCTTATTCAGAAAAGAACTGGGGCGGAGGATTCCCAAGAAAGTGGTTTT GGGTTCAATGTAATGTTTTAGAAGGTGAGGGTGCTAGTGGAGAAATTGCACTTACAGCTGCTGGTGGATTGAGGCAAATT CCTGGGATAACCGAGACCTTTGAAAATGCTGCACTGATTGGAGTTCATTATGGTGGAAAATTTTATGAATTTGTGCCATG GAATGGTTTTGTTAACTGGGAAGTCACTCCTTGGGGTTATTGGTTTATGTCTGCAGACAATGGCAGTTATCTGGTTGAAT TAGAAGCAAAAACAGATGATCCCGGTACTCCATTGCGTGCGCCAACATCAGAAGCAGGCCTTTCACAAGCTTGTAAAGAC ACATGTTTCGGAATTCTTACATTGAAAATATGGGAACGAAGATATGATGGCAGCAAGGGGAAGATCATATTGGACGTTTC AAGTGACATGGCAGCTCTAGAAGTTGGAGGAGGTCCATGGTTCAGCACTTGGAAAGGCAAGACGACAATGCCACCGGTCA TTGGCCCTGCTCTTGGATTACCCGTAGACCTAGATGGCATTTTTAATGCGGTTCCTCTGTTTAAACCACCTGGTTTGTGA
Protein sequence (LotjaGi1g1v0403300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
METTKLWNSPHFPFSTTANANANARPTHRVSLKLPFPSTPPPPPPPSRLHVAPIAYSPTPPNRDLRTPHSGYHFDGSARK FFEGWYFKVSIPERRQSFCFMYSVENPAFPNPLTPLESVQYGPRFTGVGVQILGADDNYICQYTPQSNNFWGSRHELLLG NTFVAKPNSKPPNKEVPPQEFNNRVLEGFQVTPLWNQGFICDDGRSNYVETVKTARWEYSTRPVYGWGDVGSTQKSTAGW LAAFPVFEPHWQICMGGGLSTGWIEWDGERIEFENAPSYSEKNWGGGFPRKWFWVQCNVLEGEGASGEIALTAAGGLRQI PGITETFENAALIGVHYGGKFYEFVPWNGFVNWEVTPWGYWFMSADNGSYLVELEAKTDDPGTPLRAPTSEAGLSQACKD TCFGILTLKIWERRYDGSKGKIILDVSSDMAALEVGGGPWFSTWKGKTTMPPVIGPALGLPVDLDGIFNAVPLFKPPGL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 53 | 479 | 427 | 1.8E-238 | – | |
| PANTHER | 53 | 479 | 427 | 1.8E-238 | ||
| Pfam | 79 | 437 | 359 | 5.2E-140 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Tocopherol cyclase activity | Catalysis of the reaction: alkene group + alcohol group on same molecule = cyclic ether. Substrates are 2-methyl-6-phytyl-1,4- hydroquinone (forms delta-tocopherol) and 2,3-dimethyl-5-phytyl-1,4-hydroquinone (forms gamma-tocopherol). |
Expression pattern of LotjaGi1g1v0403300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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