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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0405100 |
| Transcript ID | LotjaGi1g1v0405100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Polynucleotidyl transferase, ribonuclease H-like superfamily protein; TAIR: AT2G34320.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein; Swiss-Prot: sp|P0C2F6|RNHX1_ARATH Putative ribonuclease H protein At1g65750; TrEMBL-Plants: tr|A0A151T6U4|A0A151T6U4_CAJCA Putative ribonuclease H protein family; Found in the gene: LotjaGi1g1v0405100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:89396353..89405707) extracted from Lotus japonicus Gifu genome v1.2.
TTTGTATATTAGTTTTATTGCTTTTCGCATTTGGGTTTTATCTATTTCAGTCTTGTCTTAGTTATTATCGAAAAAAAAAT ATTCACGTTTTTCCGCATTAAGTTTACTTTTGGTTACTAAAGTGACGCCACCGAAATCGGGGTGTTACAGGAAGGCCCTG ATGTCCATGAAATCCTTCACATCGCGTGGCCCAGATGGGTTTCAGCCTTGTTTCTACAAGCGATTTTGGGATCTCATTGG TGGTGATGTGTGCTCAGTTGTGCAGAACGCTTTTATTCAAGGTAGGGTGGAAGCAAAACTTCTAGAACCCTTGGTGGTGC TTATCCCTAAAGTGGAGAGCCCTTCTTCAGTCAAGGAGCTTCGCCCAATCAGCTTGTGCAATGTCTTGTACAAAGTCATT ACCAAGGTTCTGGTTAATAGATTACGTCCTATGATGAATAGGTTAATTGGCCCCATGCAGAGTAGCTTTTTACCAGGCTG TGGCACTATGGACAATGCGTTTTTGGATCAGGAGATAATACATCACATGAATTCCTCCTTGGCTCGGAAGGGACTTCTAG CTTTCAAATTTGATCTTGAAAAGGCATATGATAGCGTTTCCTAGGAGTTTCTAGAGGAAACCCTTCACCTCTTTGGTTTT CCTTAGAAGACAATTGAGTTGATAATGAGTTGCATTGGTGGTTCCAAGCTGTCTATTCTTTGGAATGGAAATAGGCTCCC TCCCTTCCACCCTGGGAAGGGTCTCCGCCAAGGAGATCCTCTATCCCCCTACTTGTTTGTGCTATGCATGGAGAGACTAT CTTTGAGGATTCACCAGTTGGTGGAATCTGGTGCTTGGAAACCCATCAGGATCTCCCCTCACGGACCCCCTATCTCCCAC TTATTTTTTGCTGATGATGTTCTTCTATTTTTCCAAGCTAATGTTAGCCAGGTCCAATTGGTAGCAGATACTCTTCAATT ATTTTTCCGCCATTCAGGTTTAAAAATCAATATCAACAAATCGAAAGCTTTAGCCTCTAAGGGTGTGCAGCCTTTGGTTC GTGAGGAGATCAGGTCCATAGCTCTCATTCCTTTTGTTCAAGACCTTTGCAAATACTAGGGATTTCCACTCTCTGGCGGA AGGAGAACAAGAGGACGCTTCAATTATCTCATGGATAATATAGGCTGAAAACTTGCAGCTTGGAAAACCAACATGTTGAA CTTGGCAGGTAGAGTTTGCTTAGCCAAGTCGGTAATTTCAGCCATGCCGACGTACTCAATGCAAGTGTTTTGGCTTCCAC GACACATGATTCACAAGATTGATAGAACAATGAGGAGCTTCATCGGGTCCAAGGGCAATGGTACCCGCGGGTGGCACATG GTTAATTGGAACACGGTCACGTTGGACAAGTCTCATCACTACTACAAAAAAGGCTTTTTGCCACGGTTCGACACGCCCTT TCGCCACGGTTAAACCGTGGCGATAGCTACCGTGGCAATTGAGCACCGTGGCAATTGCTCAATTGCCACGGTTGGAGGGC AAACCGTGGCAATTGCTTTACCTATTGCCACGGTTCGTAAAAGGCAAACGTGGCAATATGTGGCCTCTATTGCCACAGTC AAGCGTCGAACCGTGGCAATATGTTGCATTTATTGCCACGGTCAAGTGGGGAACCGTGGCAATAAGTGTCTTCTCACTAT AAAAATTTGCTGTTTAGCGGGGTTTTTTACATTTAGTGGCGGTTTTTGACCCCCGCCTGTCATTTTGCAGGGGTTTTGAA AACCGCTCCTGATAGACTCGCCACGCGCATACCGCGGCGGCAGTTTTAAACAACCCGCGGCAGTAAAACACTAGGCAGAG ACAATTTAGTTCTAAAACTTTTATTCATACAGTTTAGGCATTTTAAAATAAAAATCTTAGAAAAACAAATACTATCTCAA AGCAATGACTACTGAGAGAATTTTAGGAAAAGAAGTCAAATCATATATACTCTATAAAATCTAAAAGCTACTATCAAAGC ATAGCTATGTAATGGTTCTTCACAAAAATATGTGCTGACTTGTTTGTCATTGTTTAGGCAAGTATGAGGATAAAGTTAAA TTTGTCCCACTAAGCTCAAAGGTAACCAAGACTACTTACTACATTGCACGAACAAAGACAAGTATGACAATCCAGAAAAA ATGATATTAAGAGAACTTAGGATTTTTTAAACCAAACAAGTTTAAATTTATCTCAAACTTTCTTCTATGGAACAAGCATG ACTCCTACAAAAAAAAGTTTACACTTTCTTCTCACGAAAGAATTCAATTATGTTCAGCCATCAAGGTTATGGAATTACAA AATGTGCACCCAGTTATCAATCCAGAAAGTCTACAGCACAAAAGAAGAGCACAGGTAAGGACTGTGCAAAGGACATGTGA AAAAAGGGGACCTACTTTTCGATCACTTGCTTGATTAGCACGTCCATCTTGAGAGAAGAAAGCCAAAACCAAATTTCCCA AAAATGCTCCAATGTCAAACCCTATTAGTCCATAGAATGCAAATTCTGGATCAATAACTTGTGTTGATTCAAGAGTTACC ATCACAGAACCAGTGTGTAGATCTCCATGTATTAGTGCCAGAGCCCTCTCACAGAACCTGCACGGATATAAATTCTTATA AACAAAATGCTGATAACATAACTACTAAATAAAATGGAGAAAAAAGTGAGTCATAAGACTTCCATTTGAGCTCAGCAACT TCAAGCTTCAGAAGAATGTCTTCCCAAACAGCCTCCGCATCACTATCGAGATAAGGGGAAGTCCAATGATTATATTGAGA AAAACTTTATAAGGATCAGAGAAAACAACCTGCTCAGTGAGCCTGCATAACTCCACATTCCCACAATATTCGCCAACTGC ATGAAGCTAGCACGAGATCAGGCTAATATGTAAGAACCTTTCTTATCCTAACAGGAAGATGATATCATTTCTCCCATCCA TTTTGAAAGACAAAGCTTAATTATCAAAACCAATGAATCAAAGCACATAAGAGTACGACTATCATAAATTTAATCTCTTT CATTACAACATTTTGCTCAACAAAGACATAACCAAGCTCAGTATCTTTCTCTGAAATGATTCCCAGCAATTGGGGGAGCT GAAACAAAATATTCCACACACAAAACCAATTATCAAATTCAAAATCAAAGAAAGTTGAAAACCAACAAAAACCATAAGAA TGAAGAAACAAGGAATAGCCCCTAGGTCACTTGTATAAAAGCAAGCAAATGAACATAGTGCTAGTACTAGCTATATTTCA GACACAGATTCCATAGATGTCATATGCTCCTAAATTCCACTGCCATTAAGTATGTAACGTTAATTATGATCAATCTGCAG AAATACTTTCTTTGGCCGTGGACAAATCTTCATTTCCACTATGATTCATAAAGAGGCAAAACAAAACACACCCTACTTTT AATTAGACAATGATAAGAAATAAACATAATGTCGATATCGTTTCCCTACTGGAAAATAAGATGGTGCAAAAAGACTTACC AATAGTCATTTTGTTCCACCCTCCACAAACGCAGATTTGAGATTTCACACAAATTCAGATATTTCCTGAGTTGCCAAGTT CAAAGTTAAGTGGTAAACGATCCAAATTTATATCTCTGAGCTGTCCATTTCATGAACCTTCGGATCTCATCAACAAAAGC ATCTCTGCAATAACAGTAACAAACACACATGAAAAAAAATTCCATCCTCAGATAAATGGTTAAATACCCATGAAGCAAAT CCATCCTCATCAAACTTCAGATGACAAAAGAAGCAATTCCCAGCAGATATCAATTTCAAAAAGCACATCAAGATCTATGA ACACAGAATGGAACCCACAAAACTAAAAACAAACATCATTTAAAAGGGGCGAAACGAAAACATTTTGACGATTGTAAGAT AAAACCCATCACAAAGATATCACCTTGATTTCATCCTGCCGCACCGTCCTGTCCTCCCTCCGCCTCTAGCATGACGATGA TGGGCGATGGCGCGATCGAAGAACAACCACAGAAAACGGCGCGATGGAGAACAACAGAACGAAGGAGGAAGACACGACGG AGACCTGTAGATGATAGAGGAAGAGTAACGAGCTTGACCTCACGAAGAGGATAAGCGAGGCCATGGGACCGTCGCCGTGA ACAGAAGAGAGGCCGCGAGCTCGAGCTCGACCTCAAGAAGAGAGAGCTTGGGTTTAACGTCGTCGTTTTGAAGGGTTGGA GTCGTCTCCACCGTCGTGAATGGTGGGCGACCTTAACATGCTCACACCGCTGGGATGGAGTGTGGAGAGTGGGAGGGAGA GGGTTTAGGGTTTTTCATCTGAAAAAAATTATAACGTGTGGGAGAGAGAGGACAAAATCGACGGGGAAAATGAAAAATTG GGCAAACAACTTCTATTGTCACGGTCCCTCAAATAAATAATAAAATATTACCCCCTATTACCACGGTTCCGCCCATAACC GTGGCAATTGAGTTTTTGCCACGATTCCTTCTATAACCGTGGCAATTGAGGCGTGGCAAAATGTCATTTCTGTAGTAGTG CATGGTGGGTTGGGTGTTAAAGATATGGATGATCACAATATTGCTCTTCTGCGGAAAGGGGTTTGGCAACTTTTAGGTGG TTCGAACAAACTTTGGGTCCAAGCATTTAAGCACTAATATTTGCAAGAGGCTTCTATTTTGAATGTCCAGGTGCGTCCGC AAGCTTCACTAGTGTGGAAGGGCCTTTTGAAGTAAGAGACTGCTTACGGGAAGGGTTCAAATTCAAGTTGGGTTCTGTAG CAACATCGGTTTGGTATCAAGATTGGTCGGGTAGAGGTAGAAATGGAGAGTAGTTACCTATCATTCATATATCTGATACG TCTCTCACCGTCAAGGATCTGATTTCGAATTATGGGTGGAACCTTTCGAGACTCTATACCATGATTTCGGAAGAGATTAC AACTTGTTTTTCTAACCTGGTTCCTCGTCTAGTGGACGGAGCCATTGATGGGTGGTCGTGCATTGGCAGTGACCATGGTG GGTACTCAGTTAGCAGTGAGTACGAGTGATTGAGAGAGCAAAGATCGACAATGGAGGAGACCCCTAACTGGAGATGGATT TGGAAAGTCTCAGTCCCAGAAAAGGTTCGCACCTTCATCTGAAGATGTCTGCATGAAGCTCTTCCCAGCAACGGTAATAG ATTTAAGTGTCGGATGGCGGCTTCTGCAGCGTGTGCGAGATGTTCTTCACCGGTGGAGGATGCTCTCCACGCTCTGCGTG ACGGCCCTCATTCGAGGGAACTTTGGAATAAGATAGGAGCTTACCAATGGCCCCAATTTTGGAACTTGAACCTGTGGGAT TGGATTCACCGGCATGGTCGTAGCAACCATGCAATCAAATTCATTGTTGGGTTATGGAGCGTTTGGAAATGGAGATGCAA TATGTGCTTGGAAGTGGAGGCTTGGAACCTTGAGAGTGCTTGGCGTAAATACCGTATTGAGCTGGATTCAGTCTCGCGTT TCTTGAAACCGGATCTCTTGGATGGCTTGCGTTTAGGTTGGCGTGCTCCTCCCCATGATTTTCTGAAATTGGAAGTCGAT GACAGTCATCTTGCAGAAACATATTGTATGGGAGGTGGAGGAATCCTCCGAGATGCTGCGGGCTCCTGGATGTTAGGCTT CATGAGCCACAAGAAGCATGGTAACCATTTCATGTCGGAGGCGCTGGCTCTTCGTGACGGCTTGGTGACAGTGTGGAATC ATGGTGGGCGAAAGATCCTTTGCGAGTTGGACTACAAAGAGTTGGTGAATCTTATAAAGCTTCCAGCCGAGAACGTACAA CACGCACAGCTAGCTCTTGTGAATGACATCAGGCAACTCCTTCGGCGTACCTGGACGATTGAGGTTACTTGGATTCATCG TGAGTAAAATGCAAATGCGGACTGATTAGCGAAGCGTGCTAGTAGACTTTAGGACGAGGGAGTTAGCTTTATGCCCTCGC CTCCTCCCGAGTTACAAGTTATCCTTCTAAAGGATGTTTTAGGAGTCGTGTAGTTTTTTGTTTTTGCCTTGTAATTTTCC GATGTATCACAAAAAAACAGTGACAGAATGAATTTTACCTGGAATTATCACCTTGCTTAGTTGATCCTGAGCTAGAAATT TAGCCTGAATTCAATTATCTGATTGGACATGTAAAACATACAATATTTTCGTACTTTGCTTATTTGCATAAGTGGCTAGG TTGTATGAAAATGTACAATGCTAATTATTTCCATCTGAGAAATTCTACCCAAAACTTTTCCTCTTCCATCTTTCATAAAG AGAAGGCTATGAACATGAAAGAGAGATGTGAGATAAGAGGAGCAATAAAGTAGAAATATTGGGACATATCCATATTAGCA TCTTTGTCTATAGTAAGAATGGAAGAAAGATTTCTTTTCATTTTTAACAAACAAACAATCATGTGACAATCACATGACCA TTAAATTATTTTAATCTTGACTATTGATGATTCAATCTAAGGATTGTGATTTATTCCTATGTTCTCATATAAAATGATGT TCATTCTCATACATCTCATACATATAAAGAAGAGTGTGAATGAATTAAAATTGTCCTCATACCTTGACCAATCTGCTTAT CTGAGTGTTAACTCTGACATTTATTGGAGTGGTATCCCTCAGTTTAGCTAATTTTGGTCCCACTTCAGCAAATGCATGTC ATGCCTCAAGTCTAAATTAGAAGTCATTTACTCCATTTAAAATCATCCTCAATCTCAAGACATTGCTAATTAAGTGCTCA CTATCTCCCTCACACCAGAGCATTAGCTAATCAAGTAAGTTGACGTAGTGGTTAAACACTGAGTGGTTGAGTATTTAATT CTAAATTTTTGTGAATTAAAAAACTGCTTAGTGTGAGTCACGGCAAACCTTGGCTAACACCAAAACAAAAAATAGTGCAT TAATTAGCCACAAACTCAAACATTCAGAATGGTAGCTGCTAGTATCCTCCTTCAATCATTCACAGCGTACAGTAAACTCA TCATAACAATAATGTGTCCTGCTTTAGTATTCAGGGTTTCTTTCCTTCCTTGCTTTTCATGTTCACCTCCCAATACAATC AACCACAGAAATCCTGGAACAGAATCCGAATGCATTCACCAACTCAAGTATCTTATCTGAAGTAATTGCTTTGTCGAGCC TTATGCTTTAATCTGGCCCAGATGTCTCATTGTTGAGGTTCTTAAATAGTTTTCTTAATTAAGGAAAAAAGCAAAATGTG TGGCACTGATTTCCTCTGTAGTACTTGTTTACTGTGATGATGGATGCATGCAACTGTGGATTGAAAAAAAAGAGTAATGA TATGTTATATACTTCATTTTCACCTATTTTTATTTCGATCTCTCTCCTCTTATTATCTATCATATCTTATACTTTCTCTC TCTTACTTTTTTTTTTCTTCCTATATCTCTCATCCTCCACCTCTTTCCACCTCAAAGATTATCCGAAAAAAAATCATTCG AGGGGTCCTAAAACAGGTGTCCATCAACAGGGAAAAGCTTTATGTGTAGGAGGTACAATTTCATCATTTGGAAAATGCAC ATATAAAGCAATAATTAATAACCCTTTGGATCAATTATTTTCGTTGTAACTGATGTAAAGCATAAAATGCAGAGTCCCCC GCGGGTGCTAGAAGCTCTGAAGCCACTGTCTCTTCACTCTTGTACAGAACAACTTTCATAGATTCACACTCAGTTAGTGT GTTTTGTTTATCCGTTGGATTACATGATTTTCTTGAATACAACATTAATTTTGCTCGGTTGCAAAACTGTCTAGAAAACC CAACTATGTCAGCTGAACGTGCTTTTAGTAACATCCTTAATCTGATCGATGACCGCCACAGGGCTCAGGGGGCCAATAAA CTCTTACCTCCCATTCCAACTGCACATCTTTTTTCTTACCAGTTCTCTTTTATTTTCTCATAACATCACTTTTTTGTACC TGTTTTCTTTCTTAAGCTGTTTCACTTCTGCAATAATACAATAATGGCCTCTAAATGACAAGGACTTTGTAACGTGTCAA ATCTTCATAATGAAAAAGGGCTCCTGTATATGTTAAGTTTTGACATAGCCGCCGGTGGAGCCACAGGGGGCCAATAATGC CATCACACCGAAAAAAATTGTCATACATATTAACATATATCAACATTTTAATTTATTTTCATTTTACATGTGATAATGGA AATAGAAAAATGTTGATACATTGTCAAGGTAAAAAAAATTACAGACATCCATCAATTTATTTCATTAATAATCATTTTTA TTTAAATTAAAATTAAAAAGTGTAACCGCTTAATTCTATGTGTCATAATTTAATTGGTTGTTTGTGTAAAATTAAAACTA AATGAAAATTATGAAACAAGATTTTATTGGGATTTTTCTATTGATTTATGTTGTTATCGAATATTGATTAGGGTTAACTT TTCTTTTCTTAGAATTTAGATTAAGTCTAGTTCCACCACAAAAACTTATAATTTTGAGTTGAGGGTTGTTTTATAATTTC TAAACTCTTATTTACTTAGGGTTGAACATTTAGAGCATGGAATTTGCATGAATGAAAATTTGCAAAACTAAATGACCTAT ATATGAGGGGTTGGCAAAAGTCAGAGTGCCCCAAAAATTTAATTTATTTGTCAACTATCTTTATTTTTATATATAAATTT TTACATTCTTAGTCCCCTCAAGACTTAGATTTTTTGTTATTTTATTTCGCCCTTAATGAAAAATCTTAGATATGTAAACG TTCCTTGTTAAGCTTTACTCTACTCTAAGAGCTAGTTAGTTTCGAAGTGATAGTTATTCTTAAACTTTTGTGATCATATC TCTAATCAGTATATAGACTTCTCTAACATGTTTTGTTGAATTGTTTAGGTAGTATTTGATATGGATGGTTTTGATTTTGG GATTTACTTTAATTAATATGTTATAAGTGTTAATGCTATGGGGTTTGGTCATACATAACTTCAACTCAATAATATAGAGA TATATTATTTGACATTCGAAAAACATGTTATAATATTATTCGAAAGTTTACATAATCGGTTATTTTAGTGGAGTATGAGA GGGTCTCATCCTAAAAGGTCACATGTGCTAATCTCCTTTGGATATATAGCTTAAATGTAAATATTTGTTAAGTGTTCTTA AAATTCGATAACTTCTCTGTGCTTTGGACCGAGACATCATCCTCTCACCCTAAGTTTTTAATTTTGTTGTACAAGAAAAA TATCAAGATAAGCATATTTTATTTGCTTAAATGACATGTTCTATGGCATTGATCACCCCTTAAATATAGCTCGGG
CDS sequence (LotjaGi1g1v0405100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGGCTTCTGCAGCGTGTGCGAGATGTTCTTCACCGGTGGAGGATGCTCTCCACGCTCTGCGTGACGGCCCTCATTC GAGGGAACTTTGGAATAAGATAGGAGCTTACCAATGGCCCCAATTTTGGAACTTGAACCTGTGGGATTGGATTCACCGGC ATGGTCGTAGCAACCATGCAATCAAATTCATTGTTGGGTTATGGAGCGTTTGGAAATGGAGATGCAATATGTGCTTGGAA GTGGAGGCTTGGAACCTTGAGAGTGCTTGGCGTAAATACCGTATTGAGCTGGATTCAGTCTCGCGTTTCTTGAAACCGGA TCTCTTGGATGGCTTGCGTTTAGGTTGGCGTGCTCCTCCCCATGATTTTCTGAAATTGGAAGTCGATGACAGTCATCTTG CAGAAACATATTGTATGGGAGGTGGAGGAATCCTCCGAGATGCTGCGGGCTCCTGGATGTTAGGCTTCATGAGCCACAAG AAGCATGGTAACCATTTCATGTCGGAGGCGCTGGCTCTTCGTGACGGCTTGGTGACAGTGTGGAATCATGGTGGGCGAAA GATCCTTTGCGAGTTGGACTACAAAGAGTTGGTGAATCTTATAAAGCTTCCAGCCGAGAACGTACAACACGCACAGCTAG CTCTTGTGAATGACATCAGGCAACTCCTTCGGCGTACCTGGACGATTGAGGTTACTTGGATTCATCGTGAGTAA
Protein sequence (LotjaGi1g1v0405100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAASAACARCSSPVEDALHALRDGPHSRELWNKIGAYQWPQFWNLNLWDWIHRHGRSNHAIKFIVGLWSVWKWRCNMCLE VEAWNLESAWRKYRIELDSVSRFLKPDLLDGLRLGWRAPPHDFLKLEVDDSHLAETYCMGGGGILRDAAGSWMLGFMSHK KHGNHFMSEALALRDGLVTVWNHGGRKILCELDYKELVNLIKLPAENVQHAQLALVNDIRQLLRRTWTIEVTWIHRE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 2 | 237 | 236 | 8.6E-33 | – | |
| PANTHER | 2 | 237 | 236 | 8.6E-33 | – | |
| Gene3D | 124 | 237 | 114 | 4.8E-6 | ||
| CDD | 126 | 237 | 112 | 2.14735E-20 | – | |
| Pfam | 140 | 237 | 98 | 4.3E-18 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | RNA-DNA hybrid ribonuclease activity | Catalysis of the endonucleolytic cleavage of RNA in RNA-DNA hybrids to 5'-phosphomonoesters. |
Expression pattern of LotjaGi1g1v0405100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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