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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0408200 |
| Transcript ID | LotjaGi1g1v0408200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Lachrymatory-factor synthase; TAIR: AT4G32870.1 Polyketide cyclase/dehydrase and lipid transport superfamily protein; Swiss-Prot: sp|P59082|LFS_ALLCE Lachrymatory-factor synthase; TrEMBL-Plants: tr|G7J3I2|G7J3I2_MEDTR Polyketide cyclase/dehydrase and lipid transporter; Found in the gene: LotjaGi1g1v0408200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:89811143..89814028) extracted from Lotus japonicus Gifu genome v1.2.
CTTAAAGCCAATCCAAGAAAAGAAAAAACCTGAAAAACCAAACCCACCAAAATGAGTGATCACAACCCAAACCAAACTAC AAAGCATTAGGATACAAAATAATCACATTATATAATTATACACCATGGGATTCCGTTGGCTTGATTAAGGCAAATGATTG CCATTATCAATATCATATAGTATGTTTCAAGACTCAATTGTCTCGGTTCCCCTGAGCCAATAGCTACAAATTAGCAGAGA GCGTGATTATGGCAGAGGAATCTGAGGCAAAATGGGAAGGTAAAGCTGTAGTTGAGGTAGCAGGAGTGGGAGCTGAAGTT GTATGGCCTGTATTAGAGGATTTCTGCAACGTACATAAATGGCTTCCCTTAGATTTTTGTTACCATGTTGAAGGGATTCA AGGTCAACCTGGTCTCATCCGTTACGCTGGTTCTTCCTCCATAAAAGGGGGTGCTGCTACTGATACTGCTACTGCTGATG ACACAACCTTCACGTGGGGCAAAGAGAAGCTGCTGAAAATGGATCCCGTCCAACGTTGTTTGTCCTATGAAATTCTCGAC AACAACTTGGGATTCAAGTCCTATGTGGCCACATGGAAAGTACTAGATGCTGAAATTGGGTGCAAGATCCAATGGGAGTT TGCGTGTGAACCTGTGGAAGGGTGGAGTTTCCAAGGTCTCTACTCAGTCATTGAGTCCTGTCTCAAGTTCATGGCCAACA AGATTCAGAGCTTGCACGCTTCTGACAAAGATTGAAGCCAGAATTGTTAAAATGTGAGGACTATTCTGATAAGCAAGAAT AGTTCAAGGACCTGTTTGTAATAAGCTAGTTGTTTAATTTTAAGTTTGTTAGAGTTAGTTCAGGTTGTTAGAACTAATTA GCTGACCTGGCATGCCAGCTGTACTAGTTAGTTACACCAAGCTAGATTAGTTAGAAGTTGATAATCACTATAAATAGTGA TTTACATTGTAACTGAAGGTTAAGATGAATAATCAGAGATTCAATTGAAGTTTTATCTTCTTCTTCCTCACTTTTCCTCT AAGAAATCTTTGATGGTATCAGAGCCCTAACCAGGGTTCTGCCATCTCAATCTTCCGCTACAATGGTGCGTCAAGCATCG AACAACAACAACAATGGCGTTCAGCAAGCGCATGGTGTTCAGCAACCACATGTGGTGTTGGAGCCAGCACAAAATCCGAT TTCACCCTATTACATTCATTCTGGAGAAAACCCCTCTGCAACAGTGGTCTCACTACCTCTGAATGGCAGAAACTACAACG CCTGGGCATGATCGATGAAGCGGGTTCTAGTTGCAAAGAACAAATTCAAATTCATCAATGGCGAGATTCCAATAGCAGTA CCTGGAGATGCAAACTATGAAGCCTGGGATCGATGCAACAACTTAATCCACTCTTGGATCCTCAACTCGGTAACATCTTC TATTGCTAATAGCATAGTTTTCGTAGAGAATGCTTGCGATGCATGGAGAGATTTGAGAGATAGGTTTTCTCAGGGTGTTT TGGTTAGAATTGCTGAGTTACAAAATGAAATTGGTAATTTGAAGCAAAATACTCTGTCAGTGAATGATTACTACACCGAG ATCAAGACTCTTTGGGAAGAATTGGAGCAATATCGCCCAATTCCACAATGCAGGTGTGTTGTACCTTGTCGTTGTGAGGC TATAGAGCATGCTAAGATGTTTAGGGAACAAGATAATGCAATACGATTTCTTTTGGGGTTGAATGAAACTTTCAGTGTTG TGAACTCACAAATTCTGATGTCAAATCCTTTACCTCCAATTGCAAAGGTTGTTTCACTAGCTATGCAACATGAGAGGCAA TCAGAAACTGGAGAAAATGAAGAATCCAAGTCTCTGGTTAAAATGGCAGAAGGAAAGAAGACATATGGAAAGGGAAAAGC TCCTGGTTCTAGTTCTTCAGGTTCTGGCTACAAGAGTACTGGAAAATATTGTACACACTGCAAGAAACCTGGCCATACAG TGGATGTTTGTTACAGGCTCCATGGTTATCCCACCACTTCTAAGTCCAAACCTGCTTTTAACAATGTTAGTCATATTAAT AACATTACATGAGGTTATGATTCAGAGGATGATCAAGAAGAGAGCTCAAAGTCACAAAGAGGGAATGGGGATTTGTTCAC AGCAGATCAATACAAGACAATTATGGCCATGATTCAGCAGGTTACTGCAACTTCAGCTTCACAGAAGCACACTGAGTCAG GAAAAGCTTTTGCAAATCTTGTTACAAAATCAGCAGTTTGTGGAGCAAATACTGCAGGAAATGGTAAGCATTCAACTTTA TCCTATTCTAGCCAATATGATAGTAGAGATTGGATAATAGATTCTGGAGCAAGTGACCATATATGTTTTAATAAGCTGTG TTTTGATACACTTAACAGAATAAAACCTGTTAGTGTTAGGTTACCTAATGGAATTTCTATTCAGACTTGTTATGCTGGGG TTGTGAGTATAACAAAACAGATTTTGTTAACACATGTGCTTTATGTGCCAGAATTCACTTACAACTTGATTTCTGTTCAT AAACTTGCTAAAAGAAATCGTTGTGAAGTTGTTTTTGGTGAATTCACTTGTTTTGTTCAGGAGAAGCACACCAAGAAGAG GATTGGTTTGGGTAGCTTGAAGGAGGATGATCTATATCACTTAGTAGTCACTAGTCCTTCTAGTACCTGTTTTGCTATTC CAAATGTAGTAGAAAGAATAAGTGATTCTGATCAATTGATTCCACCCGGTGCATTATGGCACTTCAGGTTAGGACATTTA TCACATGATAGGATCTTAGCCTTAAATGCTTTGTATCCTTCTATTGATGTAAGCAAGCATTTTGTTTGTGATATTTGTCA TTTGGC
CDS sequence (LotjaGi1g1v0408200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAGAGGAATCTGAGGCAAAATGGGAAGGTAAAGCTGTAGTTGAGGTAGCAGGAGTGGGAGCTGAAGTTGTATGGCC TGTATTAGAGGATTTCTGCAACGTACATAAATGGCTTCCCTTAGATTTTTGTTACCATGTTGAAGGGATTCAAGGTCAAC CTGGTCTCATCCGTTACGCTGGTTCTTCCTCCATAAAAGGGGGTGCTGCTACTGATACTGCTACTGCTGATGACACAACC TTCACGTGGGGCAAAGAGAAGCTGCTGAAAATGGATCCCGTCCAACGTTGTTTGTCCTATGAAATTCTCGACAACAACTT GGGATTCAAGTCCTATGTGGCCACATGGAAAGTACTAGATGCTGAAATTGGGTGCAAGATCCAATGGGAGTTTGCGTGTG AACCTGTGGAAGGGTGGAGTTTCCAAGGTCTCTACTCAGTCATTGAGTCCTGTCTCAAGTTCATGGCCAACAAGATTCAG AGCTTGCACGCTTCTGACAAAGATTGA
Protein sequence (LotjaGi1g1v0408200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAEESEAKWEGKAVVEVAGVGAEVVWPVLEDFCNVHKWLPLDFCYHVEGIQGQPGLIRYAGSSSIKGGAATDTATADDTT FTWGKEKLLKMDPVQRCLSYEILDNNLGFKSYVATWKVLDAEIGCKIQWEFACEPVEGWSFQGLYSVIESCLKFMANKIQ SLHASDKD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 2 | 163 | 162 | 1.3E-55 | – | |
| PANTHER | 2 | 163 | 162 | 1.3E-55 | – | |
| Gene3D | 2 | 167 | 166 | 4.5E-41 | ||
| CDD | 9 | 160 | 152 | 1.61715E-24 | – | |
| Pfam | 13 | 141 | 129 | 1.7E-21 | ||
| SUPERFAMILY | 18 | 161 | 144 | 2.5E-18 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0408200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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