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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0410600 |
| Transcript ID | LotjaGi1g1v0410600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | DUF1005 family protein; TAIR: AT1G10020.1 formin-like protein (DUF1005); Swiss-Prot: sp|Q7YR83|ESPB1_PIG Epididymal sperm-binding protein 1; TrEMBL-Plants: tr|I1K9I9|I1K9I9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0410600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:90121471..90124734) extracted from Lotus japonicus Gifu genome v1.2.
TGAAAATCTAATTAACCTTTAATTCTATTTTAATCAAATATGGACCCTTAATCAATATGTGGAGAGAAAAAATTAAAATT GTGCAGAAAATAATACTAAAGAAAATAATTAAATATTCAGATGTTTCACATAATATGATCATGTTAAATTAACACATTAA GAGATATAAATCTCATGTTTCTTACTCAAAATAAACAGCATTGCTTAAGTAGTCCAAATAAATTAAGTAACTTCCATTGA AAATACTCTTCATGAAAATATTCACGGTGAAGAGATTAGTCACTCCGGTCGACGGCAACTATATGAACTCACCAAATATA ATTTGAAAAAATCCAATGGGCGAATTGGTGAAAAAAGGTGGAGCCCAGTAAAGTGCAGGAGAGAGGGACCTGAGCTCACA GCAGCAATAGATACCTCCAAGTCGGGTTCCCCAGCCACTAGAGTCACGACACCCTGTACCCAGCTGTATCCCACCCTGTT TTCTCTTTACCTTTATGTTCATTTCTCTCTCTTCCTCACCCTCTTCTCTTCTCTTCCCACAACTCACCAACACAAAACCA AACAAACCTAAACCCCCCCTACCTTCATAGCTTCCCCTTTTTTCCATTACCTGAAAACATGAACCACACTCTCACTCCTT CTCCTTCTCCTTCACCTTCACCTTCCTTCCTCCTCATGCTGCTAATTCAGCATTCCCATTTCCTCCACTAGCATTCATTC CCTTTCCCCTTCTCCTCTCTTCCCTGTTCTTCCAACAAACCCTAACCACCAACGCCATGGATCCTTGCCCTTTCGTGCGC CTCACTGTAGGCAACCTCGCTCTCAAAATCCCCGTCGCGTCCAAGCCAGCACGCTCCGTCGTCCACCCTTCCTCCTCCCC CTGCTTCTGCAAAATCAAGCTCAAGCACTTCCCTCCACAATCCGCTCTCGTCCCCTTCATCCCTACCGAAACCAACCTCC CGGACGCGCAGGTTCACCCCATCGCCGCCTCGTTCCACCTCAGCAAGCCCGATCTCGACAAGCTCGTTGGAAAATCCATC TTCGCTAAGAAGCTCTGCCTCGAAATCTCGATCTACACCGGCCGGAGAGGCACCACTTGCGGCGTCAGCTCCGGGAGACT GCTCGGGAAAGTGTCTGTACCTATAGACCTCGCCGGAGCGGTGAATAAGGCTACGGTGTTCCACAATGGCTGGATTACGG TTGGGAAGGAGGCTAAAGGCTCCTCCGCGCAGTTTCATCTGAATGTGAAGGCTGAACCTGATCCTAGATTCGTTTTTCAG TTCGACGGTGAACCAGAGTGTAGTCCACAAGTTTTCCAGATCCAAGGCAACATTTCTCAACCAGTCTTCACCTGCAAGTT CAGTTTCAGAAACAACAGTGATCGGAATCAACGTTCCAGGTTCGTTAACTCTCTTCAATTTTCGCATCACGCATTCATCT TCAACCTAATTAGATTCCAAAATCAGCACAATTTTGGCGGTAGTGTTCAACATTTTCACACTATTTGCGCGCAATCCACG CACTTTTTCAGGCACTTTACTCTTTATGAACAAGGAAAATTGAAAAGTAAAGTTGAATCGAAAATTGAAAGGGGTTGAAG TTGAAGATGAAGTTGAAGTTGAATTTGAATATCTTCATTGTAGATTTTGAATGTGGTTTTTGCTTTCAAATTAGAAGTGG TTTAGGAGTCAATTCTAGGGTTTTCAATTTCAATTATCCAATTCTGTAACCGTTTTCTGTTACTTGTTGATACGGTTATT GTTATCTCTCTCTGATTTCTGAGCGGTTATTCTGTTTCGTTCAGATCGTTACAGTCAGAAGCGGGTGGTTCCCGGAGTTG GTTAAGCTCGTTCGGAAGCGAACGCGAGCGGCCGGGGAAGGAACGCAAGGGATGGTCCATAACGGTTCACGATCTCTCCG GCTCACCGGTGGCTGCAGCGTCCATGGTTACACCCTTCGTTGCTTCACCCGGTTCGGACCGGGTGAGCTGCTCCAACCCT GGTTCGTGGCTAATTCTTCGACCGGGTGATGGCACGTGGAAGCCATGGGGGAGGCTCGAGGCGTGGCGCGAACGCGGCGG TTCCGATGGGCTTGGTTACCGGTTTGAGCTTATACCAGACACCAGCGCCGCCGGCATTGTGCTAGCAGAGTCCACGCTGA GCTTGAACAAAGGAGGGAAGTTCGTGATTGATATGAGCAGCCACCGCGGTAGCGGTGGCGGCGGAGGTGGTGGATCTAAC GGCCGTGCCACGCCGGGGAGCGCGACGTCGCCGGCGTGCAGCCCGAGGGGTAGTGGAGATTACGGTTACGGGCTTTGGCC TTATTGCATGTACAGAGGATTTGTGATGTCTTCCAGCGTGGAGGGTGAGGGAAGGTGCAGTAAGCCCACGGTGGAAGTGA GCGTGCCGCACGTGAATTGCACGGAGGATGCGGCGGCGTTCGTGGCGTTAGCCGCGGCGGTTGATCTGAGTGTGGACGCT TGCCGCCTCTTCTCACAGCGGCTGAGGAAGGAGCTTTGCCAGCAGATGGATTTACTTGGCTAAGCAAGCTCTGTTGTCGT TTCATGCTTTGGCCCCCGTCGTTTTCTTTATTAATTTTTTTTTTTTTTTGAATGGGGTTGTTCAATTTGAGTGAGGCAAT TTACTACTAACAAACAAATTTACAGGCTGTACAGAGTGGAGGGTGGTATTAGAGAGAGTGGGTGCTTTGTATTCACGTGT GGCTTTTTTCATTGATTTTCTCTCCTTTTTTGTCAATTATGGGAAATCAAGAAAAAGCTTTTCTTTTATCGATTTTTTGC AGAACAACTGTTGTTGCCCTGACACATCACTCATGTGTCTCTGTTTTTCATTTTTGCCTTAATTTGTGTACCTTACTAAT CTCTAGTCATTTTAATCTGTAAGTAAGTACTGGTAAATCTTTGTTATGTAGCTGTAAGTACCCTTTGTCATGTGATAAAG CTGTCAACCTATTATTTCTAGTTAAGTGACTGTAGAATAGTGTTTGGTACAGAAATTTATACAGGAATGGTAAGTTTAAC AAATATCCTTACAATGGATGGAAGATAAAAATGGCAATCAGAACAAAATTCGGCGCTAAGCAGAAGTTAACAGATAGATT TTCTAAAATTGTAGCATTTCATACCACGTTTCTAATGTTTATTTTTAAACTTTTTTTCTGTTTTTAAACTTTTCTAATTA TTTACGTGAAGATTTTTCTATAGTACTGAGATGAGTTTACTCCATTTATCTATTTTCCTTTTGC
CDS sequence (LotjaGi1g1v0410600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATCCTTGCCCTTTCGTGCGCCTCACTGTAGGCAACCTCGCTCTCAAAATCCCCGTCGCGTCCAAGCCAGCACGCTC CGTCGTCCACCCTTCCTCCTCCCCCTGCTTCTGCAAAATCAAGCTCAAGCACTTCCCTCCACAATCCGCTCTCGTCCCCT TCATCCCTACCGAAACCAACCTCCCGGACGCGCAGGTTCACCCCATCGCCGCCTCGTTCCACCTCAGCAAGCCCGATCTC GACAAGCTCGTTGGAAAATCCATCTTCGCTAAGAAGCTCTGCCTCGAAATCTCGATCTACACCGGCCGGAGAGGCACCAC TTGCGGCGTCAGCTCCGGGAGACTGCTCGGGAAAGTGTCTGTACCTATAGACCTCGCCGGAGCGGTGAATAAGGCTACGG TGTTCCACAATGGCTGGATTACGGTTGGGAAGGAGGCTAAAGGCTCCTCCGCGCAGTTTCATCTGAATGTGAAGGCTGAA CCTGATCCTAGATTCGTTTTTCAGTTCGACGGTGAACCAGAGTGTAGTCCACAAGTTTTCCAGATCCAAGGCAACATTTC TCAACCAGTCTTCACCTGCAAGTTCAGTTTCAGAAACAACAGTGATCGGAATCAACGTTCCAGATCGTTACAGTCAGAAG CGGGTGGTTCCCGGAGTTGGTTAAGCTCGTTCGGAAGCGAACGCGAGCGGCCGGGGAAGGAACGCAAGGGATGGTCCATA ACGGTTCACGATCTCTCCGGCTCACCGGTGGCTGCAGCGTCCATGGTTACACCCTTCGTTGCTTCACCCGGTTCGGACCG GGTGAGCTGCTCCAACCCTGGTTCGTGGCTAATTCTTCGACCGGGTGATGGCACGTGGAAGCCATGGGGGAGGCTCGAGG CGTGGCGCGAACGCGGCGGTTCCGATGGGCTTGGTTACCGGTTTGAGCTTATACCAGACACCAGCGCCGCCGGCATTGTG CTAGCAGAGTCCACGCTGAGCTTGAACAAAGGAGGGAAGTTCGTGATTGATATGAGCAGCCACCGCGGTAGCGGTGGCGG CGGAGGTGGTGGATCTAACGGCCGTGCCACGCCGGGGAGCGCGACGTCGCCGGCGTGCAGCCCGAGGGGTAGTGGAGATT ACGGTTACGGGCTTTGGCCTTATTGCATGTACAGAGGATTTGTGATGTCTTCCAGCGTGGAGGGTGAGGGAAGGTGCAGT AAGCCCACGGTGGAAGTGAGCGTGCCGCACGTGAATTGCACGGAGGATGCGGCGGCGTTCGTGGCGTTAGCCGCGGCGGT TGATCTGAGTGTGGACGCTTGCCGCCTCTTCTCACAGCGGCTGAGGAAGGAGCTTTGCCAGCAGATGGATTTACTTGGCT AA
Protein sequence (LotjaGi1g1v0410600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDPCPFVRLTVGNLALKIPVASKPARSVVHPSSSPCFCKIKLKHFPPQSALVPFIPTETNLPDAQVHPIAASFHLSKPDL DKLVGKSIFAKKLCLEISIYTGRRGTTCGVSSGRLLGKVSVPIDLAGAVNKATVFHNGWITVGKEAKGSSAQFHLNVKAE PDPRFVFQFDGEPECSPQVFQIQGNISQPVFTCKFSFRNNSDRNQRSRSLQSEAGGSRSWLSSFGSERERPGKERKGWSI TVHDLSGSPVAAASMVTPFVASPGSDRVSCSNPGSWLILRPGDGTWKPWGRLEAWRERGGSDGLGYRFELIPDTSAAGIV LAESTLSLNKGGKFVIDMSSHRGSGGGGGGGSNGRATPGSATSPACSPRGSGDYGYGLWPYCMYRGFVMSSSVEGEGRCS KPTVEVSVPHVNCTEDAAAFVALAAAVDLSVDACRLFSQRLRKELCQQMDLLG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 452 | 452 | 1.1E-256 | – | |
| Pfam | 1 | 446 | 446 | 3.9E-207 | ||
| PANTHER | 1 | 452 | 452 | 1.1E-256 | ||
| MobiDBLite | 202 | 236 | 35 | - | – | |
| MobiDBLite | 202 | 224 | 23 | - | – | |
| MobiDBLite | 339 | 367 | 29 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0410600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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