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LotjaGi1g1v0413800.2

Overview

Field Value
Gene ID LotjaGi1g1v0413800
Transcript ID LotjaGi1g1v0413800.2
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description Phosphoenolpyruvate carboxykinase (ATP)-like protein; TAIR: AT4G37870.1 phosphoenolpyruvate carboxykinase 1; Swiss-Prot: sp|Q9T074|PCKA_ARATH Phosphoenolpyruvate carboxykinase (ATP); TrEMBL-Plants: tr|I1JV14|I1JV14_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0413800
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:90624072..90626668) extracted from Lotus japonicus Gifu genome v1.2.

CAACTAATGATTATCAATGACTAGTTCTTCTGAGTTTCTGACCTTGTAAGTTGATCTAAATTCAGGTTTATGTGAATGAT CAATTTCTGAACTGGGATCCTGAAAACAGAATCAAAGTCCGAATTGTATCTGCCAGAGCTTACCATTCCCTATTTATGCA CAATATGTGAGTAATGGCTGATTATCTATCTTTTGCACACACAAAAGTCTTTCCACATTACCAGATGTTTCTTTACAATC TTCAGAACTAAGTTTAGTAGGCACTGAAAATGACACAACAGACAGATACACAGCTATGTGCGTGTTTGGATAAGCGTTGT GAGAGTTGATTTTGGATAATGACACAACTGACAGGTGCATCCGACCCACTCCTAAAGAGCTAGAGGAGTTCGGCACTCCA GACTTTACTATATACAATGCAGGGATGTTCCCTTGTAATCGTTACACGCACTATATGACTTCATCAACCAGCATAGACAT CAACCTAGCAAGGAAAGAAATGGTTATCCTTGGCACACAATATGCTGGGGAAATGAAGAAAGGTCTATTTAGTGTAATGC ACTACCTCATGCCCAAACGCAATATTCTCTCCCTTCATTCTGGGTGCAACATGGGCAAAAATGGCGATGTCGCGTTCTTT TTTGGATTATCAGGTAAAGTAGTGAAGCCATCACTTGCATATCAATGTTGCATTCTGATGAGTTTTCATTAATCTTGTTT ATATTGTGATCCTCATAGGTACTGGAAAGACTACTCTTTCCACTGATCATAATCGGTATTTGATTGGAGACGATGAGCAT TGCTGGAGTGAAAATGGGGTGTCGAATATCGAAGGAGGTTGCTATGCAAAGTGTGTTGATCTTTCAAGGGATAAGGAACC AGATATCTGGAATGCCATAAAATTCGGGACAGGTAACATACAAATACACCTGACAAAAGACTTTCCTTAATCATATGCAC CTGACAAACAATTATTTACCTTCCTTTGTTTGCAGTTCTTGAAAATGTTGTTTTCGATGAGCATGCCCGAGAGGTAGATT ACTCAGACAAATCTGTAACTGGTAAGTGTGATAAAATAAATGTGGCAATAGTTTATGTTAAATGCAAAGCTGAATCCTAT GGGAAGTGATATTTTAGATGGATTTTGTACTATTGCTTTGTAAGATCCTCACAAATATTAACATGTTTGGATCAACTTCT CTTTCATCAGAATTAATTCTGAGATTCAAAAGCTTCTTCGAATTGATTTTGACTTCAGAATCAATTGTAGAATGACAACC AATTGTGAGTGTGAATCACATTTTAACTAATCTGCTGCTGTCAGCTTAAACTTTATGCATAAACTATGGATTAAGAAATA ACAACATATTCAAATCACTCTTCATATGACTAATTATATGATCAAAATTTCTAGAATTCATGTTGAAAATTGAATAATAG TTCGGAGCTTTTGGTTTCGCAGAGAACACTCGTGCAGCATATCCTATCGAGTACATACCCAATGCTAAGATACCATGTGT TGCTCCTCATGCAAAGAATGTCATCCTTCTAGCTTGTGATGCATTTGGGGTACTCCCCCCAGTAAGCAAGCTGAGCTTGG CCCAAACAATGTATCATTTCATCAGTGGCTACACAGCCCTGGTAATTCTGAAACCTTTCATTTCTTGTAACACCTTTATT GGCACCCTATAGTTTATGCAGAGGACCTGCAAAATGCTTTCCTACATGTACAAGTTGTTATAGTTACTATATGACACCAG GTTGCTGGGACAGAGGATGGTATAAAAGAGCCACAGGCCACATTTTCAGCTTGTTTCGGGGCGGCATTCATAATGATGCA TCCTACTAAATATGCAGCAATGTTGGCTGAAAAGATGCAGACGCATGGGGCTACTGGATGGCTTGTCAATACTGGCTGGT CAGGAGGAAGGTGTGGACTCTATCACAATTTTCTCCAAGAGATAATAAGATCAAGACCTTTTGGCATCAAATGGTGTATA AAATTCTCATTCCACCAATGAAATCTTGTCATATCAATTAAAAAAGACGCGATTGAGACAATTACAAATTTACAAGTGAA TTTTAGTGGTGGAACTGGGATAGAGAATGAGACACTGTTTGAGGTCAGAAGATTCTAATCATTCTCCTGCTCAAACTAAA TTTTCTTACCTATAAATTTACAGCTATGGATTAGGAAATCGGATCAAGTTAGCTTACACCAGGAAAATCATCGATGCCAT TCACTCTGGGAGCCTTTTGAATGCAGAGTACACCAAGACTGAAGTATTTGGGCTTGAGATCCCAAAAGAAATAGATGGAG TCCCTTCTGAAATCTTGGACCCCATAAACACTGTAAGTTGATACTCAGTACTCACTATTTTCCTCCTTTCAAGTATCAAA ATTATGAACGTATGAACTGAACTGACTCACCTTAAATTCGACTTGAATTACAGTGGTCTGATAAGAATGCCCACAAAGAT GCACTTCTGAAATTAGCCAGTCTATTCAAGAAGAATTTTGATGTATTCACGGCCTATAAGATAGGGGACGATCAAAAGTT GACTGAAGAGATCGTAGCTGCTGGTCCTATATTCTGA
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0413800.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGCACAATATGTGCATCCGACCCACTCCTAAAGAGCTAGAGGAGTTCGGCACTCCAGACTTTACTATATACAATGCAGG GATGTTCCCTTGTAATCGTTACACGCACTATATGACTTCATCAACCAGCATAGACATCAACCTAGCAAGGAAAGAAATGG TTATCCTTGGCACACAATATGCTGGGGAAATGAAGAAAGGTCTATTTAGTGTAATGCACTACCTCATGCCCAAACGCAAT ATTCTCTCCCTTCATTCTGGGTGCAACATGGGCAAAAATGGCGATGTCGCGTTCTTTTTTGGATTATCAGGTACTGGAAA GACTACTCTTTCCACTGATCATAATCGGTATTTGATTGGAGACGATGAGCATTGCTGGAGTGAAAATGGGGTGTCGAATA TCGAAGGAGGTTGCTATGCAAAGTGTGTTGATCTTTCAAGGGATAAGGAACCAGATATCTGGAATGCCATAAAATTCGGG ACAGTTCTTGAAAATGTTGTTTTCGATGAGCATGCCCGAGAGGTAGATTACTCAGACAAATCTGTAACTGAGAACACTCG TGCAGCATATCCTATCGAGTACATACCCAATGCTAAGATACCATGTGTTGCTCCTCATGCAAAGAATGTCATCCTTCTAG CTTGTGATGCATTTGGGGTACTCCCCCCAGTAAGCAAGCTGAGCTTGGCCCAAACAATGTATCATTTCATCAGTGGCTAC ACAGCCCTGGTTGCTGGGACAGAGGATGGTATAAAAGAGCCACAGGCCACATTTTCAGCTTGTTTCGGGGCGGCATTCAT AATGATGCATCCTACTAAATATGCAGCAATGTTGGCTGAAAAGATGCAGACGCATGGGGCTACTGGATGGCTTGTCAATA CTGGCTGGTCAGGAGGAAGCTATGGATTAGGAAATCGGATCAAGTTAGCTTACACCAGGAAAATCATCGATGCCATTTGG TCTGATAAGAATGCCCACAAAGATGCACTTCTGAAATTAGCCAGTCTATTCAAGAAGAATTTTGATGTATTCACGGCCTA TAAGATAGGGGACGATCAAAAGTTGACTGAAGAGATCGTAGCTGCTGGTCCTATATTCTGA
Download CDS Sequence

Protein sequence (LotjaGi1g1v0413800.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MHNMCIRPTPKELEEFGTPDFTIYNAGMFPCNRYTHYMTSSTSIDINLARKEMVILGTQYAGEMKKGLFSVMHYLMPKRN ILSLHSGCNMGKNGDVAFFFGLSGTGKTTLSTDHNRYLIGDDEHCWSENGVSNIEGGCYAKCVDLSRDKEPDIWNAIKFG TVLENVVFDEHAREVDYSDKSVTENTRAAYPIEYIPNAKIPCVAPHAKNVILLACDAFGVLPPVSKLSLAQTMYHFISGY TALVAGTEDGIKEPQATFSACFGAAFIMMHPTKYAAMLAEKMQTHGATGWLVNTGWSGGSYGLGNRIKLAYTRKIIDAIW SDKNAHKDALLKLASLFKKNFDVFTAYKIGDDQKLTEEIVAAGPIF
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR30031:SF9
1 321 321 9.5E-250 –
PANTHER
PTHR30031
1 321 321 9.5E-250
IPR001272
Pfam
PF01293
1 324 324 1.0E-163
IPR001272
SUPERFAMILY
SSF68923
1 79 79 1.64E-28
IPR008210
Gene3D
G3DSA:3.40.449.10
1 86 86 4.5E-171
IPR008210
SUPERFAMILY
SSF53795
81 365 285 2.14E-111 –
Gene3D
G3DSA:3.90.228.20
87 324 238 4.5E-171
IPR013035
ProSitePatterns
PS00532
118 133 16 -
IPR015994
Gene3D
G3DSA:2.170.8.10
143 202 60 4.5E-171 –
PANTHER
PTHR30031
319 366 48 9.5E-250
IPR001272
PANTHER
PTHR30031:SF9
319 366 48 9.5E-250 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004611
Molecular function Phosphoenolpyruvate carboxykinase activity Catalysis of the reaction: source of phosphate + oxaloacetate = phosphoenolpyruvate + CO2 + other reaction products.
Subterm of
GO:0004612
Molecular function Phosphoenolpyruvate carboxykinase (ATP) activity Catalysis of the reaction: ATP + oxaloacetate = ADP + CO(2) + H(+) + phosphoenolpyruvate.
Subterm of
GO:0005524
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
Subterm of
GO:0006094
Biological process Gluconeogenesis The formation of glucose from noncarbohydrate precursors, such as pyruvate, amino acids and glycerol.
Subterm of
GO:0017076
Molecular function Purine nucleotide binding Interacting selectively and non-covalently with purine nucleotides, any compound consisting of a purine nucleoside esterified with (ortho)phosphate.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0413800.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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