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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0417700 |
| Transcript ID | LotjaGi1g1v0417700.2 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Histone deacetylase complex subunit SAP30; TAIR: AT1G19330.2 histone deacetylase complex subunit; Swiss-Prot: sp|B7IHW1|RL6_THEAB 50S ribosomal protein L6; TrEMBL-Plants: tr|A0A151RBL7|A0A151RBL7_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0417700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:91169186..91171742) extracted from Lotus japonicus Gifu genome v1.2.
CTTGTTGAAGCAGCAATGGAAAGTTCCGTCAATGGTGGTGGTGCCTTCTCCCAGTTACACCAGAGCTGCGGAGATAGCAG CGAGGAGGAGCTTTCCGTCCTCCCTCGCCACACCAAGGTGGTTGTTACCGGCAATAACCGTACCAAATCGGTCCTCGTTG GTCTCCAAGGAGTCGTTAAGAAAGCCGTTGGACTCGGTGGTTGGCATTGGCTGGTAATTTCCTCTCCGCCATCAAAATGC CTCTGCTAATTCTCAATTCAATTCTGCTCATTCTAATTTTGGGTTTTTATTTTTTTTGAATTTGCATTTTCATGAAATCA AGTGATTCAAATTTCAAAGCAATGTCAATTTTGGTATTTTATTTTATTTTATTTATTTCTGTTTTTATTAATCAAATTTA ATTGCTTTGAAGCCCCTATCGATTCAGGGTTTCCAATTTTCGAACCAGGGTTTTACTTTTAATCTGTGTTCTAAACCCTA CTTCATGATTTCTTATCCATAATCATTCATTATTAATTTGGATTCTGAAATCAATGTTGTGGTTTCAATAGATTTTGTTG CTTTAAATGGGTTTTGGGTTTCAATTTTGTATCACTACTTGTGGTTTTACTTTTACCCATTGCATGTCTTGCTTCATTTC TGGATCTGGTGTTTCATTAGGTGCTCTGTGAAGAGCATTGTTTGTTGTTTGGTTTCAATCATCGATGGAAGCAAATTAGA ATGATCTTTGCTATGGGTTGGTGCTGGTAATTTTTTGTTTGAGCTCTGAATTGAGTGTTTTATGCCCTTTTTGGCATTGT TTCCTATTTTGACTAAAGCTGATTTCTTTGTAACAACCCAGATTTCTTTTGGGATTGTTGCATGTTTTCCTCTCCAGTGA TAAATTACATGCATGTTTTGATTATGTTTAGGTTTTAATGATATGTGTATTGATACTGTAATTGAATTGCATAGAATTTC ACTCCTGTTGTGGATAAGAAGCTTATCTTTGTGTTACTTCAATCAGAATCTGTAATATTCAAGTTTTAAAGGTTTAATTA TGATATGTCTTTTATTTTCCAACCAATTCTCCTGTCTACCATTTTTTTAATCTGTGTATTCTGAAATTATTTATTAATTA TTATACAAACTTGTTTGGGGGTTTTCTTTTGGGAGATTTGGATTTGAATTATGTTTTGCTAATGAACTTTGATTACTTGA AACTAGGTTTGAATTTGTTGTTGGATAGACCATTATTTATAAATGTTATTGGTATTAAAAAATGCAGGTTCTTACGAATG GAATTGAAGTGAAGCTGCAGAGGAATGCTCTTAGTGTGATTGAAGCACCCACTGGCAATGAGGAAGATGATGATCTTGAA TTTGAAAATGTGCAATGGAATGGATCAGATATGGGTGAGCCTACACTTCACCGCTTCGAACTTTCCTGAATACTAACTGA CATTGATATTGTGTGATCCTGTGTTTTATCTTCATACAATCTCAATAAAGACTGGCAAACTGGTTTACTATTTTGTTTTC TCCTGGAATTTTATATATGATTGTGTAATTGTTGCTGGGAAGGTAGGGATATATTGGAATACTGAGATATTTTACTATTA TTTAATTAATTTTTGTTTTGGCTTCCATGTCCGTGGGTTTCCAAAGTGATAGAAGTTGGTAACATTGGATCCATTGTGTC TTCTTCCCCTTTTGCTTTTGCCACCATATCTCTAAAAGTTTTGGTGTCTTACTTCTTTAATGTTTATTGACCCCACCACT ATTTCAATCTTTTGCTTATTTTGTGTGTTATCTTTGATTTCTCAGCATCGGACGACACACAGAAGACCCATAAATCGAGG CACAGAATGAATAGATCATTGGGATCATCTCACAAGACCATGAGTAGGTCCTTCTCTGGTGATTCACAGTCTAAGGGGTC CGTTACTATGACTCATGGGTCCATGGTATATCAACTTTACTCTTGTTTTTGTTCTTTTCTTTTTTGTAATTTATTTCCCC ATCCCACTGACAATAATTTATTCCTTATTGATAGATATTTTAATTATTTACATTATTTTTAAAATATTGTGTAGAAGGTT GACTTGAGCAAACTTGAAATGGCTGCTTTGTGGAGATATTGGCGACATTTTAATCTAGTAAATTCCTAAAACTTATCGTT TGGTTACAATTTTAAGATGCTTATAGCAGTATGTGAGTGTGTTGAAAGTTGTACTTATTTCTAAAATGTGTTTGTAGGTG GATGCCATCCCAAATCCATCAAAAGAGCAGCTAGTAGACGGTGTTCAGAGGCATTTCATGTCTCAGGTATTTGTTTGTCT CAACTAGTTATTGTTGAAATGGAGCAATTTTTGTGCGAGCACACGAATTTGTTATAATAACATTAAAGTAATTTAAGGAA TGATTCTGTTGTCTTCTTTAGTTGTTATCTTAATATATCTATGTTTCATTAGTGTATTAGTGTTGTTGTCATGCTATAAT TGTTCCATTGAAATACATGAAGTTTTCTGTAGTGGTGAACCTTATTATATCTGGTCCCAATCTCTTCTGCTAAGTAA
CDS sequence (LotjaGi1g1v0417700.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAAGTTCCGTCAATGGTGGTGGTGCCTTCTCCCAGTTACACCAGAGCTGCGGAGATAGCAGCGAGGAGGAGCTTTC CGTCCTCCCTCGCCACACCAAGGTGGTTGTTACCGGCAATAACCGTACCAAATCGGTCCTCGTTGGTCTCCAAGGAGTCG TTAAGAAAGCCGTTGGACTCGGTGGTTGGCATTGGCTGGTTCTTACGAATGGAATTGAAGTGAAGCTGCAGAGGAATGCT CTTAGTGTGATTGAAGCACCCACTGGCAATGAGGAAGATGATGATCTTGAATTTGAAAATGTGCAATGGAATGGATCAGA TATGGCATCGGACGACACACAGAAGACCCATAAATCGAGGCACAGAATGAATAGATCATTGGGATCATCTCACAAGACCA TGAGTAGGTCCTTCTCTGGTGATTCACAGTCTAAGGGGTCCGTTACTATGACTCATGGGTCCATGGTTGACTTGAGCAAA CTTGAAATGGCTGCTTTGTGGAGATATTGGCGACATTTTAATCTAGTGGATGCCATCCCAAATCCATCAAAAGAGCAGCT AGTAGACGGTGTTCAGAGGCATTTCATGTCTCAGTTTTCTGTAGTGGTGAACCTTATTATATCTGGTCCCAATCTCTTCT GCTAA
Protein sequence (LotjaGi1g1v0417700.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MESSVNGGGAFSQLHQSCGDSSEEELSVLPRHTKVVVTGNNRTKSVLVGLQGVVKKAVGLGGWHWLVLTNGIEVKLQRNA LSVIEAPTGNEEDDDLEFENVQWNGSDMASDDTQKTHKSRHRMNRSLGSSHKTMSRSFSGDSQSKGSVTMTHGSMVDLSK LEMAALWRYWRHFNLVDAIPNPSKEQLVDGVQRHFMSQFSVVVNLIISGPNLFC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 8 | 198 | 191 | 6.7E-98 | – | |
| PANTHER | 8 | 198 | 191 | 6.7E-98 | ||
| MobiDBLite | 105 | 146 | 42 | - | – | |
| MobiDBLite | 128 | 146 | 19 | - | – | |
| Gene3D | 135 | 207 | 73 | 7.4E-12 | ||
| Pfam | 161 | 198 | 38 | 1.8E-14 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0417700.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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