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Field | Value |
---|---|
Gene ID | LotjaGi1g1v0418800 |
Transcript ID | LotjaGi1g1v0418800.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein; TAIR: AT3G13100.1 multidrug resistance-associated protein 7; Swiss-Prot: sp|Q8WXR4|MYO3B_HUMAN Myosin-IIIb; TrEMBL-Plants: tr|A0A151TC30|A0A151TC30_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0418800 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:91262181..91263518) extracted from Lotus japonicus Gifu genome v1.2.
AAAGATATCGTTCTACTTGCTTTTATAGCATGTAGAGATAACAGAGAGAGAGAGACAGAGAGGGGTTTTCATTTGGAAGA AGAAGGAATCATCCGTCTATCCTATCTATCACATAAAAAGAGTTTACTATCAACAGAGAGCTGAAGGATTGAAGATGCGG TTTTCATGATCCTCTGGTATTAAGAATCACTGAAAGTGAAAAATATACTGATGATTTAGCAAGTATTTTCTAATTTCTAT CACTGAAGTTTGTTGTTTTTTGAGAGACAAGTGTTTTTATTTATTTATGGGGAAGAAGAAGCGACAGAAAATGAAGGAAC TTTCAGTAGCTATAGCTGAGTCTGCAGCATCAAAAGAAGGAGGTGATACCAAGCAGCAAGAATCACAACCTCAGGCTCCT AGAAAAAGAGGCAGGCCTCGAAAGGTTGTTAGGGAAGAGGGAAAATTAGTAGAAACGACCATGGATGAAGCAGCAGCAGC TTCCACAGCAACACAAAGCATCATGAACATGGAGAAGAAAGAAGAAGAAGAAGAAGAAGAAGAACATGAAGCATCAGCAA AGGAAGAAGAAGATATTCAACTTCCAAAAAGGGAGCCATCGAGAAGCAGGGCCAGGAGGAAAAGCAAACCCAGAAAAAGC ACTTGAAAATCATTACTTTTTTATTTTCCCCTTCTTCTCTTGTTATAATTTCTTCCCTTTCCAAGAACAAAAAAAAAAAA GAATTTGTTGAGGTTCATCGGTTTGACATCAAAGTCTTAATATTATTTGGTAATACAGGTTCTTAGTTTATCTATATATC TATCTAGCTCCTCTGAGTTCAATTAATTGCTTGCTTCTTTCGTTTAACTAGTTACTTAATAGTTAGTTTGAACAATTTGA ATATAATGTTTGGTTCTCATGCAGAAACAAGGTTAGGATTGATCTTATAGGCTTTGCTGTACATCTAAATGTATCGTGAA TTCGTGATTGATTGTTAGAAATATCTCCCAGAATATTGACATTTTTCTGCTACAATCGCTAAACAATTACTAGATATTAC AATCAGTTTGATGAGACATGTTGTTCAATTAACATGAGTTTACTTCGTTTGTCACAAGCAGTTACTAGTTTAATTATTTC TCCCATTCTACACACTACACCGCTAGTAATTAAGCTGCTTCTCTATGTTGTTGTGCTGTTATTACGAAGAAATCAGAAAG TGGAGAAGGAGTGAAGCATGTCGTAGCTGCCATATAGAACCAATGGATGATAGGGATGGTGCCACTTGATGAGGGTCATG ACCTACGCGAAGATCGCCTACTTGGTTGGATTGGGAGGATGCGATGATGTGATGCATG
CDS sequence (LotjaGi1g1v0418800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGGAAGAAGAAGCGACAGAAAATGAAGGAACTTTCAGTAGCTATAGCTGAGTCTGCAGCATCAAAAGAAGGAGGTGA TACCAAGCAGCAAGAATCACAACCTCAGGCTCCTAGAAAAAGAGGCAGGCCTCGAAAGGTTGTTAGGGAAGAGGGAAAAT TAGTAGAAACGACCATGGATGAAGCAGCAGCAGCTTCCACAGCAACACAAAGCATCATGAACATGGAGAAGAAAGAAGAA GAAGAAGAAGAAGAAGAACATGAAGCATCAGCAAAGGAAGAAGAAGATATTCAACTTCCAAAAAGGGAGCCATCGAGAAG CAGGGCCAGGAGGAAAAGCAAACCCAGAAAAAGCACTTGA
Protein sequence (LotjaGi1g1v0418800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGKKKRQKMKELSVAIAESAASKEGGDTKQQESQPQAPRKRGRPRKVVREEGKLVETTMDEAAAASTATQSIMNMEKKEE EEEEEEHEASAKEEEDIQLPKREPSRSRARRKSKPRKST
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 119 | 119 | 3.9E-30 | – | |
MobiDBLite | 1 | 119 | 119 | - | – | |
MobiDBLite | 34 | 57 | 24 | - | – | |
Coils | 65 | 97 | 33 | - | – | |
MobiDBLite | 105 | 119 | 15 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0418800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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