Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0420400 |
| Transcript ID | LotjaGi1g1v0420400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Carbohydrate kinase-like; TAIR: AT1G19600.1 pfkB-like carbohydrate kinase family protein; Swiss-Prot: sp|P77493|YDJH_ECOLI Uncharacterized sugar kinase YdjH; TrEMBL-Plants: tr|A0A072V2T6|A0A072V2T6_MEDTR PfkB family carbohydrate kinase; Found in the gene: LotjaGi1g1v0420400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:91396622..91399691) extracted from Lotus japonicus Gifu genome v1.2.
TGTTCCGGCGAGAATGGGAGCGGAAACGCCGTGTGATGGTGAAGACGCCGCCGCTCCCTTCGTTCTGGGACTCCAACCAT CTGCACTCGTTGACAACGTCGCTCGCGTCGATTCCTCCTTCCTCGATCGAATCCCCGGCGAACGCGGTGGCTCCATTCCC GTCAGTCTCTCTATCTCTCATCACTCACTCACTTCCTTCCAATTCAATTCAATTGATGCTTGCTTTGCTTGCAGGTTGCG ATTGAAGAACTCGATTTCATACTGAGCGAGGTTAAATCTATAGTACCTAATGACGACGCTGAATCTTATTCTTCGATGAC GAAATTGAAGACTCTGGCTGGTGGTAGTGTTGCCAATACGATTCGAGGACTGAGCAGTGGTTTTGGAATTTCCAGTGGAA TTATTGGGGCTTGTGGTGATGATGAGCAAGGTTACTTGTTTGTTGATAACATGTCCTCCAATGCTGTTGACCTCTCCAGA ATTCGTAAGAAGAAAGGACACACTGCACAGGTTCTGCATAATTGCTTGCTTATCATTGTATTTTACTCTCGCTATTCCAA AATAGTTGTTGTTTAAGTTAACGCACTGTAACACTATTTAAAGTAGAATGATAGTTATTGATTAAGTGATTAGTGAAAAT TGTGATAGGTTATATGGAAGAAGATGCAATAAATAGTCTTGTGTTTCTAAAACAATAATCATTTTGGAAAATAAGTGAAA AGCTAAAACAACTATCATTTTGGAACGGAGGGAGTAACAAAAAGCTTGTATGAAGTTAAATGTTAATTATAGCTTGGTTT GTCTACTTTGCCAGTGTGTTTGCTTGGTTGATGCCTTTGGTAACCGTACTATGCGGCCCTGTCTCTCAAATGCTGTCAAA GTTCAGGTACTACTTACTTCACTCTCTCAAAACTCACTCATCATTTTTTGTTTGTTTTAGTTGAGTCGTTTTAATTTTGT GAATTTTGTTTGTTTGGTAATGCTTCTTCTTTGCAGGCAGAAGAATTGAAGAAAGAGGATTTCAAGGGCTCCAAGGTTCA CTTCTTGATCAATGAAAATATATATTATGGACAAGTTTTTTTATGTTAATTATCCTGTCTGTGCTTCGATTTTGTTATTT GTTTTTCTAATTGTAGTGGGAGGGGTTTAATTTTTTCGATTCTAGGAACTAAAGTTGGACTTTTCATGAATTCTCCACCA TTATGCCTCATCTCTTATCCCTTTATACATACTGAAATTCTGTTCTTCTGTCCATCTGTCTAGGTCTACCACTACTTATT ATATATCATCTAAAGGTTCTCTGCGAACTTAGTTGCCGATATATTTACATTTCAGTGGTTGGTGTTGAGATACGCGATAC TGAATTTGGAAGTTATTCAAGCAGCTATTCTTTTAGCCAAGCAGGAAGGGCTTCTTGTTTCCTTGGATCTGGCCAGCTTT GAGGTATGTCATGCCCCTACTCAGAATTACCCTTTCCAGAAAGGTATTAAAGGGAAAAAAACTGTAATACAGCTTGATGA AAAGAAAATTCAAACCTTTTTAATAAGGTTTTTCCCACCTGAGCTTGGGAAGTCTATAATTAGAGTTTTCATTTATACCA TTTCAATAGCACACTAATCTGTTAGCAGGGGCGGAGGCAGGTTTTTTTTATAGAGGGGTGCTAAGGTCTAAAGGAATATG ATCTATAAAAGAAATTTATTTTTTATCTCATAAAGAATGTGGGAAAATTATAAATAACTAATAATTTTATATAAACATAA TAAATATAAAATTAGTTAGAGTACAAGAGATACTAATAGGCATTTTGACGAGAGAAAAAATCAGAATCAACAAAAAAAAC TACAGCTACTTGTGTCTTCTCCAAATTAGGAAGTAGAAAAGTGGCACACCGTAAATTCATAACAAATAATCGCAGAGAAT AAACATAAAATATTACTTCCACACCTAGGTTCCACACATAGTAAGAAAGAGTGTGAGTTATGGGTGCTATTCACTTGAGA AAATATGAGATCTGAACTTTAAATTTTTTTTATTAATAAAATGTAAAAAATATAGGGTGGCTACAGCAGGGAGAAACCCC CACTGTAGCTCCGCCCCTGTCTGTTAGTCTGCAAATAATTATGGAAACATGCTTGATTTCTTGTTGTCATTTACATAAAA AGATCAAATTCTTTCTTATGAAATCTCAAATTATCAAATGTGAATGTATGATATTGCTCAAGATGCCTCACCAATATAAA GAAAAATATAGAAGTTTCATTTTTAAAAAGTCCTTTGCATAATCTATATGACTACCATATTTTACACTCATAGTCTCTTT ATTTTGGCAAGATGGTCAGGAACTTTAAACTACCACTCATGAAGTTACTGGAATCTGGGAACATAGACCTCTGCTTTGCC AACGAGGATGAGGCAGCTGAACTTATAAGGTGTCTGTCCTTTGGCATCATTATCTGTTCAAAATAGAATTTATCAGTTTC CTAGTTATTTTCTGTCTTATTTTCACCGAATCTGTATTCAGTATTTTCTTTTAGGTGAGTGATATCAATTTACTTTACCA TGGATTTTAGGGGCGAACAGAATGCTGATCCAATAGCTGCAGTAGAGTTTCTTGCCAAATACTGTCAATGGGCTGTGGTA ACATTAGGCTCTGATGGATGCATTGCTAAACATGGGAAGGAGGTCAGTTGAGTTTTTTCTGTCATTTTGTGTGATCCTTC CCCAATCCTTTTTTTTTCTCTGGGGAGGTGGGGTGTTGCAGTTGGCTCTGGTTTGAAAAGATCAACGAGTCACTAACAAA GCCTTTTACATATCTAAGATGATCCGGGTTCCGGCCATAGGCGAAGCAAAAGCAACTGATGCTACCGGAGCAGGGGACCT TTTTGCAAGTGGATTCTTGTATGGATTGGTCAAGGGTTTGTCACTAGAAGAATGCTGCAAAATAGGCACATGCAGTGGTG GATCTGTTGTCCGATCTCTTGGCGGTGAGGTGACAGTAGAGAATAGGCAATGGATGTACAAGCAGATGCAGCTAAAGGGT CTTCCCCCGCCTGATGATATGTGCAAATGA
CDS sequence (LotjaGi1g1v0420400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGAGCGGAAACGCCGTGTGATGGTGAAGACGCCGCCGCTCCCTTCGTTCTGGGACTCCAACCATCTGCACTCGTTGA CAACGTCGCTCGCGTCGATTCCTCCTTCCTCGATCGAATCCCCGGCGAACGCGGTGGCTCCATTCCCGTTGCGATTGAAG AACTCGATTTCATACTGAGCGAGGTTAAATCTATAGTACCTAATGACGACGCTGAATCTTATTCTTCGATGACGAAATTG AAGACTCTGGCTGGTGGTAGTGTTGCCAATACGATTCGAGGACTGAGCAGTGGTTTTGGAATTTCCAGTGGAATTATTGG GGCTTGTGGTGATGATGAGCAAGGTTACTTGTTTGTTGATAACATGTCCTCCAATGCTGTTGACCTCTCCAGAATTCGTA AGAAGAAAGGACACACTGCACAGTGTGTTTGCTTGGTTGATGCCTTTGGTAACCGTACTATGCGGCCCTGTCTCTCAAAT GCTGTCAAAGTTCAGGCAGAAGAATTGAAGAAAGAGGATTTCAAGGGCTCCAAGATGGTCAGGAACTTTAAACTACCACT CATGAAGTTACTGGAATCTGGGAACATAGACCTCTGCTTTGCCAACGAGGATGAGGCAGCTGAACTTATAAGGGGCGAAC AGAATGCTGATCCAATAGCTGCAGTAGAGTTTCTTGCCAAATACTGTCAATGGGCTGTGGTAACATTAGGCTCTGATGGA TGCATTGCTAAACATGGGAAGGAGATGATCCGGGTTCCGGCCATAGGCGAAGCAAAAGCAACTGATGCTACCGGAGCAGG GGACCTTTTTGCAAGTGGATTCTTGTATGGATTGGTCAAGGGTTTGTCACTAGAAGAATGCTGCAAAATAGGCACATGCA GTGGTGGATCTGTTGTCCGATCTCTTGGCGGTGAGGTGACAGTAGAGAATAGGCAATGGATGTACAAGCAGATGCAGCTA AAGGGTCTTCCCCCGCCTGATGATATGTGCAAATGA
Protein sequence (LotjaGi1g1v0420400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGAETPCDGEDAAAPFVLGLQPSALVDNVARVDSSFLDRIPGERGGSIPVAIEELDFILSEVKSIVPNDDAESYSSMTKL KTLAGGSVANTIRGLSSGFGISSGIIGACGDDEQGYLFVDNMSSNAVDLSRIRKKKGHTAQCVCLVDAFGNRTMRPCLSN AVKVQAEELKKEDFKGSKMVRNFKLPLMKLLESGNIDLCFANEDEAAELIRGEQNADPIAAVEFLAKYCQWAVVTLGSDG CIAKHGKEMIRVPAIGEAKATDATGAGDLFASGFLYGLVKGLSLEECCKIGTCSGGSVVRSLGGEVTVENRQWMYKQMQL KGLPPPDDMCK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 180 | 180 | 1.9E-146 | – | |
| PANTHER | 1 | 180 | 180 | 1.9E-146 | – | |
| CDD | 15 | 303 | 289 | 1.02975E-79 | – | |
| Gene3D | 22 | 177 | 156 | 1.4E-23 | ||
| SUPERFAMILY | 23 | 304 | 282 | 2.34E-44 | ||
| Pfam | 74 | 170 | 97 | 7.2E-9 | ||
| PANTHER | 178 | 326 | 149 | 1.9E-146 | – | |
| Gene3D | 178 | 312 | 135 | 2.3E-34 | ||
| PANTHER | 178 | 326 | 149 | 1.9E-146 | – | |
| Pfam | 187 | 304 | 118 | 1.9E-25 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0420400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…