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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0423100 |
| Transcript ID | LotjaGi1g1v0423100.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ribosomal RNA small subunit methyltransferase I; TAIR: AT1G45110.1 Tetrapyrrole (Corrin/Porphyrin) Methylase; Swiss-Prot: sp|P74038|RSMI_SYNY3 Ribosomal RNA small subunit methyltransferase I; TrEMBL-Plants: tr|V7AVJ8|V7AVJ8_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0423100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:91712568..91719485) extracted from Lotus japonicus Gifu genome v1.2.
AAAAAGCCCAAGAAAAAAATCTTATCTCACTGAAAAAATGAGAAACGAGAACTAACTACTCGTTGATTCGGAAGAGGGAA AATGTTGATTCGGCGGTTGCCTTGGACGGCGGCGCCACCAGTTCGGTTACACTTCGGTGGAGTCTGCGTTCCCATTCGAA CCTCTTCCTTCTCATCCTCTTGCTCCACCTCCAGCTCAAGCGTTCATCTTCCTCAACACTCTGAAAAACCTGTAATTCTA TCTCACTTTCATTCCATGCCTAGGCTAGGTTTAACTCAATTCGATTTCTCGCATTACTCACTGAGTTTGATTGTTTTCTT CACTTCAACTTGCAGGAGAATGAAACAGATAATCGTCGCCTGCATACTTTGAAGCCCGGTCTTTATCTTGTAGGAACACC GATTGGGAATCTCGAAGATATCACCCTCAGGTACTGAATATCTGAGTTTTTCTCCTATTTTCCTCATGATTGGTTTTACT TTAGCGTAATTTTGTTCCTGGTTATTGCACAGGGCTATCCGGGTACTGAGTTCAGCAGATGTGATACTCTCAGAAGACAC GAGGCACTCTGGGAAGCTGCTTCATCACTACAATATCAAAACACCCCTTGTAAGCTTCTTCCTTTTCTCCCCATCTTCTT CAATGTTCTGTTGGATTCGTTATACCAGTTAGTTAAGTTAGGGATTGTTTGATACCATTCTGGCATTCTCAGTTTCTGAA TTTAAAAGCTATCTTAGAAAAAAAAATTGATCAAGATGTTTTATAAATTTGAATGAAATGTGACTTGAAAAATAGTAAAA ACAGAAAACTTATCAGGAGTTTGCTTTTAGAAACTGAAAAATAAGAAAAAACAGTTCATATCAAAAGAGTTTTTCTCTTT TTTCTGATTTTAAAAACTAAAAACTGCTTTACAAAACAGTAATTGTTAATCATACGTGCCCTTAGACTCTCTGTAGCACC TATTTTCGACGTGTGATTGCCTTCCGTTCCGCTGTACCTTTTCTGATACTCTTCTCTAGATCTTCAGATGAGTTACCACA AGTTCAATGAATCACAAAGGGAACAGGTTGTGCTGAAGAGGTTGAAGCAGGGTGAGATTGTGGCACTTATAAGTGATGCT GGAACACCTGGCATTAGTGATCCTGGTACAGAATTGGTAAGTTTGCTGCTGCTGTGCTTATTTATCCTTGTCAGTGTTTC TATCTGTTTCTTAACTGTGTGCGTGGTGATATTTATGCAGGCCAAATTATGTGTTAGTGAAAATGTCCCTGTTATTCCAA TCCCAGGACCTTGTGCTTTGGTTTCAGCTCTTTCTGCCTCTGGTTTACCCACTGATGAATTTACATTTGGTAATTAACTG GCTTTGTTTGGTTATCATCAGATATTTTGTCATTTATGGTATTTTTGGGACCTAATAAAACATGATTGCCATGGCATATA TTTTTCTAGTTGGTTTTCTTCCAAAACACGCGGGAACAAGAAGAAAAAAGCTCACGGTTTCGGCTGATCAAACCACAACA CAAATATTTTATGTTCCGCCTCACAAGCTTTCTCAGTTTCTTGAGGAGGGTTCTTCTGTTTTTGGTGATACAAGGTACTG AAACTTTGCCTATTGTGAAGCCATGACTTGCATTGCTTAGTTTGACAAACAAAAGTACAAGGTTCTTGTCAACCTATTCC TCTAATCAATATCCTTCAGTTGGATCCATTGGTTTATTTTGTGATATATTCTATATTTATCTTAGGTATTCTGCACTGTA ACCTGTTTATTCATTTCATCATTCAATCTCACCATGAGTTATGATTTATCTTATGTATTAATGCTACAAAACAGAATAAA CTAGCATCAGTGATACTTATTTTAGCTAGTTCACTAGTTTTTGTCCCCCCAGTTTTGCTGGGGTACCCGTACAACCATTT ACTTTTTCTTCCAAACTTCCCTTTGGGCAATAAATAATAACAAAGAAGGACTATAGAGTCATGGCTTTGTGATGAAATGT CAAGTCATTGATTGGTTAACTCTTCAATTCAATGATGTTGCAGGCGATGTGTTATTGCTCGAGAAATTACTAAGTTACAT GAAGAGGTAATTTTACCATTTATCCCTAAGAAGTCAGTATTCAGCCGTCTAAAACTTGGCACAATTGCTTTCAACTGACA CAATAGATATTGCTCCTGTAGTTTTGGCGTGGCACTCTTTGTGAAGCCAAGGAAGTATTTTCTATTCGTCAGCCAAAGGG AGAACTAACCATATTGATTGAAGGCCAAGCAAATTCTAAAGTTGAACCTCCATCAGATATTCAACTTGAAAGTGAACTAA GAGAATTAATTGCAAGTGGCGAGAGTCTTTCCACGGTAATGACTACCTTTTATTTGAACGCATTCAAATTTAGTTTATCT TGAAGCTTGATATAAATGAAAATTTGAATTTTGGATAAGCTTTTTCATTATTCTATTGCAATTTTTGATTATTATTGCAA TTTTTGGATTATTATATGATAATTTTTCAATTTTTTCTTTCTATTTCTATATAATGACACCAAAGATAGAGGAATATGTT TGTGGATTTGAACATTTACAGTTCAAACTTCAAAGCAGCTTTGCAAAAATGATCATATTACTTACTAGTTATTAAGTTAA TATCAATATGATGGAGAAATAGTCATTTTGAATTGAAGATGGTCCTTAATTTTTCTTTTCCCATATACGTGGTGCTGCCT CCTCATGTTTGGAAAAAGAAAAATCTTCCTCTGTTATCTTGACTATTCCATTTTCATTCGTAATGCATTCCACATTTCAC ATGATCTAGATCTCTTGTTTCATTTTTCTTCCCTTAGAATTGAATTTTGATTTTCTTGAAAATTATCTTAAAAGTATCAT ATTTATCTCGCAGTTGATTGACTAATTTTTATTCATAGGTAGCAAATAGCATTTCATTGTCCCCAATGTTAACATTTAAT TTAATTACAGTGTAATTTCAGTGCTTTTGTTTGTTAATTTCAACTGCTGGTGTGCATTTAGGCTGTCAAATTGGTTACTG GTAGAACATCAGTGAGTAGAAAAGCTGTATATTCACTTGCACTGAGTAAATTTGGGAAGCAACTTGAAGTGGAAGATGAT TCAAATTAATGCAGATTTCCTGTTGGCAAGTTTGATATGACTGCTGGTGTTTCATCCATGCCAACTGTTGTTCGAGTTAT CATTCTCTTAAAGCATAAAGCAGTCTATAATTATCAGCGATCGGCACCGTTTAGCTGTCTCTGTTGCTCAATGGCGATGA GCGTCCACCTAGAGGAATTACCTACCACTGCTGATAATTTTAGCAATGGTTGGGTTGGTGCACGAGAGTCCACATTGGTG CCCCTGCTCCTCAGGGTTCAGGTCTATTGGACACTCAAACAATTGGACAGCGAAACTAATCATAGATTGTTTACTCTGAG CAAGATAACAAGGAATGCACTTTTGGGTCGTACTGGTGAGGAAATCACAAGGCTGTTTTACTTATTTGCCTTTTTATCTA TTCTGCTTCTACAAGTGATCTGTTTAGTGGTGAACCTCTGTTTTATAACTTCAATTTGGCTGCATAACCTGTCTTGATTG AGTTCAAACTGCATAGTGCATTATGCTGATGTCTAATGTGATAATGAATCTAGTAATTGATTTGGATACCCTTTGGTACC AATGCAAACATACGCTAACACTTCGACTTAAAAAGGGATGGTGACTCTATATATTAAGAAAAAAAAGCACTTTTACTCTA AGCTCACCTTGTATTCAAACACAGATTTAGTGAATATCTTTGGTCTGACAATCCACAGCCAAATAGAACTATGCTACATC TCTTAATATCCCTTCATCCCAAGTCAATCTCTTGTCTGCCCCTGAAAGTTTCTAAGCTTGTTATATACTTAGATCAACTC AAGTGGGGCTGTTAGCTGAAGATAATGTAAAATATTTCAATCATCCCCAGTTGCTTTCCCCTATGTGATAGGAATTGGGT TCAGTTCTTGATTTTCCCAATGCATGGGTATGTTTGAATTGGGTAGTTTGAATGGAAAAGAAAGGGAGGGTAAAATTTTG AATTCCAATATATATTTTCTGATATGATAATGCTTTAAAAGAAATATAATGATAGAGTATATGTATAATGTTTCAATCTT TTATTTATTTTAGTAAATATTAAATAACTGTTTTAATTTTTGTTAGAAATTGTTCTTCATTAGGATTGTGGCCAAAATAG TATAATCAAGATTATGGTTCTGTATTAACACACATGAAAAGAAAATACACACCATTACTTATGATTTGTGCTATGTTATA CATAACAGTTATAAAGCAGTAACAGCAGCAAAAAAAATTCAACTTTGAACAACTGTAATGCGAAGCTACAAATCAAAATC ACATGGAGAAATAAAATAGTCGATATTATATGAAATTTACACGGTGTGGTACAGCCTGGTTTCCATTCAGAGCTGTTATT CCTGCTGGTTCCTTGTAGCTAGAAGAGTGATAGACAGACAGCTCTGATGTGTCTAGAAGAATTTATATGTACAATGATTT TGGATGAATAATAAAAGTTAAAAGCCCAAAAGTTCATTATTTTTCAAAATTTGGAACCACAGAAGATGGCAAGCATCTAT AGAAGTGAAACCTGAAACCAGAGTAGTGAAACCAGAAACAGCTGCTTGGTTGTGAACAAGACAATAACCAAATCAGACAG ACGGTCGGGATCACGGGCGCTGCACTGGAACATCTCATGTGCATTAGCTCCATCCACGCCCCAATAAAGACCCCACGTCC CCACCACTCTGTAACATCAACTCCAAACTAATTGGGTAAAATTACTAGTGAGTGTCTGAATTTTCATTTCATTACATTCA TCTAAAATTACTTTCATTTCAATCCTAGTGAAATTTGAATTTTCATTGAAAGTGTTTTTGAAAACACATTTTGCTTACCT TGCTTCCTATATGACAATAACCCCAACTCCATCCCACTAATCTCAGCTAGCAACTCCTCAACCACTCTTGCACCTGGACT ATACCCTCCTTTTTTTTTGATCAAGACTATACCCTCCTTGTAATGCTGTGATCCTCCTCATTGTTTTCTAATCATGATGG TACAATACAAATACAGTTTATTGTTTAGGCCCATCTAGTGTATGTTTGAATACACTTGCACGAGTGTTGACAGGTGTCAA CACTCACTTCACCGTAAAAAGTGAACATAGTTCTTCTTATGAATGATGATGTATGCGTTTATATTAACGGCAAGCTGATT TTAGAAATTATACTTGTATCTTCCTCACATGTATGATTATGAGGCTCCAAGAGGGGAATAGAACTGAATTATTTTATGTG TTTCCATTGTTGTCCTTCCAAATCTGAATTTGCTGTTTTGCTACATATCATATCATCTGTATATGGCTCATCAAATTGAA ATATTTGCTGGCCTGTGGCTAAGATTCTGCGGGGGTCGAATTGCATCTTCAAGGCCTGGAAATGGGTCCACTTATCCCCA AAGTGGTCCATCCACTCCTGCTGTGTTGTGTAATGGGGCATGTACTGTTTCACCTTGATCTCTGAATCTTGGCAGAATCT TAGAATCTGACGGTTCTGCTTAGTCAGGTACTCCAGTGCCTCTGTATCCAAGGCTGATCTCAGAAACGCTACCAGGTAAA ACATCTCCTCTTCTGGCGTCACTGCCGAGCTCCGATGGTCCCACCTAACACACCAAAATCACACCACCACGACCATCACG CAATATCATGTTTTGGATTTTTCTTTTCATGCATGATGCATGCAATGATCAATGCATGGATACTAGTTGCCTAGTTGATA GCACTTAAAATGAAAAGTTAGCAATTATATATGATTTATTTATGCACTTTGGTCCCTGATTAAGATTATCTCATTTCATT AGTCATTTTCCATGTCTTGCCAATCAAATTGTGTCATGTGAACTATAAAAAAAGGCTTAAACATGTAATTTATAAACTTC CGACATGTTTGAGCTTTTTTTTTATTATTCACATGACACAATTTGATTGACGGAAATAGACACTAATTGGAGAGGTTGGT GGTTGGGTGCACATAAGGCGGTTTCTATGGAACTAGGTTAGCAAGATGACATCCCTACTGTTTGAGGAGTGGGGGTCCCT ATGGAAGATCTTCTGACAGCAGAATCTTCCCAGTTGGATGATCATGGTCATGGCCATCAGTTTTTGTTTGTTTCCTGTCT ACACAAAAAGCGTGGCATTCCTAGCTGGTTCTGATGCAGATTTTCATCTGCTGTGTGTTCTTGCTGGCTACAACCCTCGT GCACTACATGCAAGCAAATTGCTTTGCATGGTTATTGCTCTTTCCATTTCCACTTGGGGTAACCATTCTTTAGTTAAATT AAGCTATAGCCTATAGGCTAATTTTTAATTGAATTAGTTTTTTTTTCTCATATTTTCCTGACTGTCTTTTAATATGTGAG GTCATGGAGTGTTTGTATTATCAATATTCTATATATGAGTAGGACATGCATACGATAAGTGAAGCAAATGGCATGAATCA TGCATGCACTTACTTGTGTTTGTTCATAGGGTATATGAGGATAGGCCCACTTGTGCTATTTCCCAGAATGCCCTTGAACA CACCCTTGTCAAAGTCTTTAATCCTTGATTTTGGAACAAAAAGGTTGAGCCATGGATGTGGGACGTCCCACAAACCCTTG GATCTGAGCTTTAGCTCTGCTTTATGGACACGATCCAGAAAATCGACATAAGGCACGTCCGTAGTGAACACTGATGTTTG TATAAAATCTAACTTTTTCAATAGAGCCTCTATTTCCTGCATCATTCTAAAAAACCTCAAAACATGTCTTTATCAACGTT GTAAATGCAAATAATAAAGTAGTATACTAAAGTGGAGA
CDS sequence (LotjaGi1g1v0423100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTGATTCGGCGGTTGCCTTGGACGGCGGCGCCACCAGTTCGGTTACACTTCGGTGGAGTCTGCGTTCCCATTCGAAC CTCTTCCTTCTCATCCTCTTGCTCCACCTCCAGCTCAAGCGTTCATCTTCCTCAACACTCTGAAAAACCTGAGAATGAAA CAGATAATCGTCGCCTGCATACTTTGAAGCCCGGTCTTTATCTTGTAGGAACACCGATTGGGAATCTCGAAGATATCACC CTCAGGGCTATCCGGGTACTGAGTTCAGCAGATGTGATACTCTCAGAAGACACGAGGCACTCTGGGAAGCTGCTTCATCA CTACAATATCAAAACACCCCTTATGAGTTACCACAAGTTCAATGAATCACAAAGGGAACAGGTTGTGCTGAAGAGGTTGA AGCAGGGTGAGATTGTGGCACTTATAAGTGATGCTGGAACACCTGGCATTAGTGATCCTGGTACAGAATTGGCCAAATTA TGTGTTAGTGAAAATGTCCCTGTTATTCCAATCCCAGGACCTTGTGCTTTGGTTTCAGCTCTTTCTGCCTCTGGTTTACC CACTGATGAATTTACATTTGTTGGTTTTCTTCCAAAACACGCGGGAACAAGAAGAAAAAAGCTCACGGTTTCGGCTGATC AAACCACAACACAAATATTTTATGTTCCGCCTCACAAGCTTTCTCAGTTTCTTGAGGAGGGTTCTTCTGTTTTTGGTGAT ACAAGGCGATGTGTTATTGCTCGAGAAATTACTAAGTTACATGAAGAGTTTTGGCGTGGCACTCTTTGTGAAGCCAAGGA AGTATTTTCTATTCGTCAGCCAAAGGGAGAACTAACCATATTGATTGAAGGCCAAGCAAATTCTAAAGTTGAACCTCCAT CAGATATTCAACTTGAAAGTGAACTAAGAGAATTAATTGCAAGTGGCGAGAGTCTTTCCACGGCTGTCAAATTGGTTACT GGTAGAACATCAGTGAGTAGAAAAGCTGTATATTCACTTGCACTGAGTAAATTTGGGAAGCAACTTGAAGTGGAAGATGA TTCAAATTAA
Protein sequence (LotjaGi1g1v0423100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLIRRLPWTAAPPVRLHFGGVCVPIRTSSFSSSCSTSSSSVHLPQHSEKPENETDNRRLHTLKPGLYLVGTPIGNLEDIT LRAIRVLSSADVILSEDTRHSGKLLHHYNIKTPLMSYHKFNESQREQVVLKRLKQGEIVALISDAGTPGISDPGTELAKL CVSENVPVIPIPGPCALVSALSASGLPTDEFTFVGFLPKHAGTRRKKLTVSADQTTTQIFYVPPHKLSQFLEEGSSVFGD TRRCVIAREITKLHEEFWRGTLCEAKEVFSIRQPKGELTILIEGQANSKVEPPSDIQLESELRELIASGESLSTAVKLVT GRTSVSRKAVYSLALSKFGKQLEVEDDSN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 36 | 58 | 23 | - | – | |
| Gene3D | 50 | 172 | 123 | 4.2E-44 | ||
| PIRSF | 53 | 340 | 288 | 1.3E-107 | ||
| PANTHER | 59 | 346 | 288 | 9.6E-138 | – | |
| PANTHER | 59 | 346 | 288 | 9.6E-138 | ||
| SUPERFAMILY | 64 | 282 | 219 | 6.41E-77 | ||
| Hamap | 65 | 284 | 220 | 35.687 | ||
| TIGRFAM | 66 | 335 | 270 | 3.8E-79 | ||
| CDD | 66 | 284 | 219 | 2.57895E-127 | ||
| Pfam | 66 | 264 | 199 | 2.4E-27 | ||
| ProSitePatterns | 143 | 154 | 12 | - | ||
| Gene3D | 173 | 289 | 117 | 5.3E-37 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Methyltransferase activity | Catalysis of the transfer of a methyl group to an acceptor molecule. |
Expression pattern of LotjaGi1g1v0423100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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