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LotjaGi1g1v0423100.3

Overview

Field Value
Gene ID LotjaGi1g1v0423100
Transcript ID LotjaGi1g1v0423100.3
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description Ribosomal RNA small subunit methyltransferase I; TAIR: AT1G45110.1 Tetrapyrrole (Corrin/Porphyrin) Methylase; Swiss-Prot: sp|P67088|RSMI_ECO57 Ribosomal RNA small subunit methyltransferase I; TrEMBL-Plants: tr|A0A072V2D8|A0A072V2D8_MEDTR Ribosomal RNA small subunit methyltransferase I; Found in the gene: LotjaGi1g1v0423100
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:91713595..91714364) extracted from Lotus japonicus Gifu genome v1.2.

ATGAGTTACCACAAGTTCAATGAATCACAAAGGGAACAGGTTGTGCTGAAGAGGTTGAAGCAGGGTGAGATTGTGGCACT TATAAGTGATGCTGGAACACCTGGCATTAGTGATCCTGGTACAGAATTGGTAAGTTTGCTGCTGCTGTGCTTATTTATCC TTGTCAGTGTTTCTATCTGTTTCTTAACTGTGTGCGTGGTGATATTTATGCAGGCCAAATTATGTGTTAGTGAAAATGTC CCTGTTATTCCAATCCCAGGACCTTGTGCTTTGGTTTCAGCTCTTTCTGCCTCTGGTTTACCCACTGATGAATTTACATT TGGTAATTAACTGGCTTTGTTTGGTTATCATCAGATATTTTGTCATTTATGGTATTTTTGGGACCTAATAAAACATGATT GCCATGGCATATATTTTTCTAGTTGGTTTTCTTCCAAAACACGCGGGAACAAGAAGAAAAAAGCTCACGGTTTCGGCTGA TCAAACCACAACACAAATATTTTATGTTCCGCCTCACAAGCTTTCTCAGTTTCTTGAGGAGGGTTCTTCTGTTTTTGGTG ATACAAGGTACTGAAACTTTGCCTATTGTGAAGCCATGACTTGCATTGCTTAGTTTGACAAACAAAAGTACAAGGTTCTT GTCAACCTATTCCTCTAATCAATATCCTTCAGTTGGATCCATTGGTTTATTTTGTGATATATTCTATATTTATCTTAGGT ATTCTGCACTGTAACCTGTTTATTCATTTCATCATTCAATCTCACCATGA
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0423100.3) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAGTTACCACAAGTTCAATGAATCACAAAGGGAACAGGTTGTGCTGAAGAGGTTGAAGCAGGGTGAGATTGTGGCACT TATAAGTGATGCTGGAACACCTGGCATTAGTGATCCTGGTACAGAATTGGCCAAATTATGTGTTAGTGAAAATGTCCCTG TTATTCCAATCCCAGGACCTTGTGCTTTGGTTTCAGCTCTTTCTGCCTCTGGTTTACCCACTGATGAATTTACATTTGTT GGTTTTCTTCCAAAACACGCGGGAACAAGAAGAAAAAAGCTCACGGTTTCGGCTGATCAAACCACAACACAAATATTTTA TGTTCCGCCTCACAAGCTTTCTCAGTTTCTTGAGGAGGGTTCTTCTGTTTTTGGTGATACAAGGTATTCTGCACTGTAA
Download CDS Sequence

Protein sequence (LotjaGi1g1v0423100.3) extracted from Lotus japonicus Gifu v1.2 Proteins.

MSYHKFNESQREQVVLKRLKQGEIVALISDAGTPGISDPGTELAKLCVSENVPVIPIPGPCALVSALSASGLPTDEFTFV GFLPKHAGTRRKKLTVSADQTTTQIFYVPPHKLSQFLEEGSSVFGDTRYSAL
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR46111
1 129 129 2.9E-65
IPR008189
Gene3D
G3DSA:3.40.1010.10
1 58 58 4.9E-18
IPR014777
SUPERFAMILY
SSF53790
2 128 127 6.28E-42
IPR035996
Pfam
PF00590
10 119 110 2.3E-10
IPR000878
ProSitePatterns
PS01296
29 40 12 -
IPR018063
Gene3D
G3DSA:3.30.950.10
59 132 74 9.1E-21
IPR014776

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0008168
Molecular function Methyltransferase activity Catalysis of the transfer of a methyl group to an acceptor molecule.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0423100.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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