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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0424800 |
| Transcript ID | LotjaGi1g1v0424800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | MADS-box transcription factor; TAIR: AT3G54340.1 K-box region and MADS-box transcription factor family protein; Swiss-Prot: sp|P23706|DEFA_ANTMA Floral homeotic protein DEFICIENS; TrEMBL-Plants: tr|Q533S3|Q533S3_LOTJA MADS box protein AP3; Found in the gene: LotjaGi1g1v0424800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:91942456..91946087) extracted from Lotus japonicus Gifu genome v1.2.
TGATAACGCAAACTTCAATCCTTGGGATATTATGTTGCGTTCAATTGAATTCAGATCTCAGTTAAGTGACGGGGTGAGTG AGCTGAGGGGTAAAACAAGGTTAACGGTTCCGTGACGGAAAGTAAAGGGGTCCCCACTCCTCACATGGAAATGTGGTGAA CAATGAAATGAGAAGAGCATGCACAAACAGTTATAACAAACCCTGCAACAACTTTCGCATGTGTGGAAAATACCCTCCCA TTTTCGGCAACGCAACCAAGCAACTCATCGCTCCATCATCCATTCATCTCCACTGCTTTATCTTTAATCAAAACCAAAAC CAGAACCAGAGAGAGAGAGAGAGGGGTAGCAAATCAATAGGAATAGGAAGAAACAAACACCTACAAGCTCGATCTATTCT AGAACCTGCAGAGAGACCTTGCAACTAGCTAGTGCCTATTAAGCTTGGAATTAGATAGATCGATAGATCGATCATGGCTA GAGGAAAGATCCAGATCAAGAGGATAGAGAACACCACTAACCGTCAGGTAACATACTCGAAACGACGGAACGGGCTTTTC AAGAAGGCAAACGAGCTCACCGTTCTGTGCGATGCCAAAGTTTCCATTATCATGTTCTCCAGCACTGGCAAGCTTCACGA GTATATTAGCCCCTCCACCTCGTAAGTCTATAATTAATTAACTTCGAAATCACTTTTTCTCAAACCCTACCTACCTAACC TTGCTAGATTTACTTTTTTGTTTTTGTTTTTGCAGAACAAAGCAGTTCTTCGATCAGTATCAGATGACTGTAGGAGTTGA TCTATGGAGCTCTCATTATGAGGTCCATCTCCCAGATCTATTTTCTTCTTTTTTTTTTTCAAATTTGTTTTGGTTACTGA ATTTGTAATATATAGAGTAAACTTATATACTTGGTTATATGTGCAGAATATGCAAGAGAACTTGAAGAAACTGAAGGAGG TGAATAGGAATCTTCGTAAGGAGATTAGGTATTTTTTTTTTTAACTTCACATCGATCCATCGATCTCTCTTTGCTAATTA ACATCGATTGTATGCATACATGTTTTAATTATATATATGTGTGGCTGCGGTGCAAAACTGCAGGCAGAGGGTGGGGGATT GTCTGAATGATCTGAGCATGGATGAACTCAGGCTTCTTGAGCAAGAAATGGACAACGCCGCCAAGGCTGTTCGTGAGCGT AAGGTAGTTAATTAGATTATGCTCACCTCCTATATATATTCACGTGCCTTAATTTGCTAATTATCTCTCATTTTGTTCCC TAAACACATGAATGAAAGAAATACAAACAACTGTGTTTTCTCAACTCTGTTAAAAACTAAAGCATCCAAGATAAATACTT GTGCATTTCTAATCACAACACCAATACCACCTAAAACCTAGGGGCTAGCTAGGAGAAGCTTGGTAGCAGTGTAGCACCAT CAACATTAAACTAATTAAGCTTGGCTTTTCACGTGCTCAAGAATATTAAGCCAGAAACAATTCTAGTTTGCCATATTTTC TTGAGAATCATGTTATTTGGGTTCCCACGTAGATTTCATTGTGTGGCACACTGCAACTGCTTTAACCCTGACCCTATTAT CACCCTCCAAAGGCACAAAGTAATCCGTTTTAGTCTCAATTTGTTGGTTTTTTTTTTTTTTGATAAGCGTCTCAATTTGT TGGTAATAAAACACAACATAAGAATGATTATGTTTGTGGCACACAACAGTTTTTTACCACTACTTTCAATTTCTTAACCT GGTTGCAATAGTGTGTTTTTTAACTATGTTTCTCTATCCACTACAGTGGACACGACATTAATATTTTTTCTCAAGCATGG AAATGGGGACAATTATGTACTCGAGTGATCGCACAATACTGTGTGACTTCGCTTGAATCCATGGTTGATTTCACCACTTC CAAACTTTGTAAAAATGTTAATGGTGTGTCAACTACATGGTGTGTCAACTACAATAGATAGAGAAACAGAGTACAAATAT ATACTATTGTAACATGGATTAAGAATTTAGAAGCAAGATTGCCATAAATAGAATTATCTTTATGTCGTGTTTTAAAGACA AGTTTACTATGTGCCTTTGAATGATGATAATGGGGCTAGGATTAAAGCAGTTGCAACACTTTGCCACAAAGACAGATCAT AGTAGAGCCACAAGCATTTAGCTTTTCAAGTGCTTGAGCTTAAGTCATCAACCGTTTAAAATTGTCATTTTCTTATTGAG GATATGTTGTTTGGGTTTCCGAGTAAATTGTCATCCAACCTCATATTTCATATAAAGTGATTGGATGATGAGTTATTTAA CTCAAACTTTATCATGGGTCATTTAGACACCCTCATGAATTCACATTTAAATTTAAATCATAATTATATGGAAATAAAGA ATATTAATATAATGGTTTTGTGAGACCAAATGAATAATGCTAAGAACTCATGGTTGGAACAAAATCTGCAAAGAGTTACT TAAGCACATGTGTCAGTACGGGTTCACATGAATAGTGCTAAGAACTAATAACTAGTATTAGAGATACTCCAAGAGTACTT GAATATTTTTTTTTGGTTAAATAAAAAGTACTTGAATTTAAAGACAGCATAATAAAGCCTAATTAGGTAAAAGCTAATTA GATAGAATTCTCGAGCCATTTGGTCCTCCTGCTGGGCCTCTTGTGTTTTTTTTTAGAGCCCCGTTTTGGGCCACTTGTGG AAATGGGCTGGTACCATTCTCATATTTTCTGTTTTTCAATTTTTTTTTGAAATTCTTCATTATTCCATGCTAACGATTTC CACATCGCAATGGATGACAGTATAAGGTGATAACAAATCAGATTGACACCCAAAGGAAGAAGGTAAAAGTGGTCAACTTA TTTCTTTGATAATTTGTTGTTCTGTGGTTAATTGGTTGAGTTTAATAATTTAAATACCCTTTTCTTGTAGTTTAATAACG AAAGAGAGGTGCACAATAGACTCCTCCGTGACCTGGTATGTATTTTAGCAATTACTATCCCAATCTGTGTACCTTTCTTT AAATCAAAGAAATATTCTGAAATGCAATTGTTTTATTATTGATTGTTAAATTAGGATGCAAGAGCGGAAAATCCACCCTA TGAATTGATGGACAATGGAGGGGAGTACGAATCTGTGATTGGATTCTCAAATTTAGGTCCACGCATGTTTGCATTGAGCT TACAACCTAGTCATCCTAATGTTCATAATAGCGGAGGAGGAGCAGGCTCTGACCTTACCACTTACCCCTTACTTTTCTAG TAAGCAAAGCAAACATTCAAGCTCTCTTACAAATACCACATCACTTTTCAATAAAATTACTATGTACTACTTCAAACAAA TATGCAGTTTGTATGTATCCATAGACACTACCAGACGCACATGTGAGTTAAATTGCAACTGGTGAACTATTATCTGTATG TTGTTTTGCCTGATCATACCACAAAAAAATTTGATGCGATGCTTCCTTTTGTTCAGAATGCTTAATTAGCATGGCCAATA TCTCATTTATAGAGCTTTTTCATAAGCTTCTAAAAAGATATATATATGCATGTATTTTTTCAGATTCGGTCTTTTAAATA AATTAAAAAAGGAATATAAAATTTCTGCTCAA
CDS sequence (LotjaGi1g1v0424800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTAGAGGAAAGATCCAGATCAAGAGGATAGAGAACACCACTAACCGTCAGGTAACATACTCGAAACGACGGAACGG GCTTTTCAAGAAGGCAAACGAGCTCACCGTTCTGTGCGATGCCAAAGTTTCCATTATCATGTTCTCCAGCACTGGCAAGC TTCACGAGTATATTAGCCCCTCCACCTCAACAAAGCAGTTCTTCGATCAGTATCAGATGACTGTAGGAGTTGATCTATGG AGCTCTCATTATGAGAATATGCAAGAGAACTTGAAGAAACTGAAGGAGGTGAATAGGAATCTTCGTAAGGAGATTAGGCA GAGGGTGGGGGATTGTCTGAATGATCTGAGCATGGATGAACTCAGGCTTCTTGAGCAAGAAATGGACAACGCCGCCAAGG CTGTTCGTGAGCGTAAGTATAAGGTGATAACAAATCAGATTGACACCCAAAGGAAGAAGTTTAATAACGAAAGAGAGGTG CACAATAGACTCCTCCGTGACCTGGATGCAAGAGCGGAAAATCCACCCTATGAATTGATGGACAATGGAGGGGAGTACGA ATCTGTGATTGGATTCTCAAATTTAGGTCCACGCATGTTTGCATTGAGCTTACAACCTAGTCATCCTAATGTTCATAATA GCGGAGGAGGAGCAGGCTCTGACCTTACCACTTACCCCTTACTTTTCTAG
Protein sequence (LotjaGi1g1v0424800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MARGKIQIKRIENTTNRQVTYSKRRNGLFKKANELTVLCDAKVSIIMFSSTGKLHEYISPSTSTKQFFDQYQMTVGVDLW SSHYENMQENLKKLKEVNRNLRKEIRQRVGDCLNDLSMDELRLLEQEMDNAAKAVRERKYKVITNQIDTQRKKFNNEREV HNRLLRDLDARAENPPYELMDNGGEYESVIGFSNLGPRMFALSLQPSHPNVHNSGGGAGSDLTTYPLLF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 1 | 61 | 61 | 32.408 | ||
| SMART | 1 | 60 | 60 | 2.8E-41 | ||
| CDD | 2 | 80 | 79 | 1.88561E-40 | ||
| PANTHER | 2 | 154 | 153 | 8.8E-67 | – | |
| PANTHER | 2 | 154 | 153 | 8.8E-67 | – | |
| SUPERFAMILY | 3 | 95 | 93 | 1.12E-36 | ||
| PRINTS | 3 | 23 | 21 | 4.4E-29 | ||
| ProSitePatterns | 3 | 57 | 55 | - | ||
| Pfam | 10 | 57 | 48 | 2.9E-25 | ||
| Gene3D | 13 | 75 | 63 | 3.1E-24 | ||
| PRINTS | 23 | 38 | 16 | 4.4E-29 | ||
| PRINTS | 38 | 59 | 22 | 4.4E-29 | ||
| Coils | 77 | 107 | 31 | - | – | |
| Pfam | 82 | 167 | 86 | 1.5E-18 | ||
| ProSiteProfiles | 84 | 174 | 91 | 14.588 | ||
| Coils | 114 | 134 | 21 | - | – | |
| Coils | 151 | 171 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | RNA polymerase II regulatory region sequence-specific DNA binding | Interacting selectively and non-covalently with a specific sequence of DNA that is part of a regulatory region that controls the transcription of a gene or cistron by RNA polymerase II. | ||
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Biological process | Positive regulation of transcription by RNA polymerase II | Any process that activates or increases the frequency, rate or extent of transcription from an RNA polymerase II promoter. | ||
| Molecular function | Protein dimerization activity | The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. |
Expression pattern of LotjaGi1g1v0424800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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