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Field | Value |
---|---|
Gene ID | LotjaGi1g1v0427900 |
Transcript ID | LotjaGi1g1v0427900.4 |
Related isoforms 3 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Cytokinin riboside 5'-monophosphate phosphoribohydrolase; TAIR: AT2G37210.1 lysine decarboxylase family protein; Swiss-Prot: sp|Q8L8B8|LOG3_ARATH Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG3; TrEMBL-Plants: tr|I1JT41|I1JT41_SOYBN Cytokinin riboside 5'-monophosphate phosphoribohydrolase; Found in the gene: LotjaGi1g1v0427900 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:92230978..92233004) extracted from Lotus japonicus Gifu genome v1.2.
ATGGAACTTCAACAACAACAACCCATCAAGTCTAGGTTCAGACGCATCTGTGTCTACTGCGGTAGCAGCCCTGGAAAGAG CCCCAGCTACCAACTCGCTGCTATTCAACTTGGGGAACAATTGGCAAGTATTCAAATATTGCTCTGTAAAATTATACACT CTGTTTTTCTCCCTCCAACCAAGTGTTTTTCATAATTTTGGAAAATACACAAATCAAAACAATTTTTTTTATCTTATGTG ATACTTTTAAGCTAGATTTTTCGTACGAACTAATTTTTTTTTGCCTCATGCACCGTTGGCTCCAATTTTTGTATTGCACT CTGTTTTTCCCCTGTTTTAAGCAGATTGTTTATGTATTGTGCTCTGTTTTTCCTCTGCCCCGTGTTCTTTCATTTATTGA TTTTGAGAAAAAAAAAAGGAGGAAGTGGGAGAACAGATAATAGGAGCGATAATTGAATCAATTATTAATATAATTGAATC TGAATGATTGAGTGGAAGGGTTGAGTTTAGTTTGACATTGTAAAGTAAACGAGAAAAAGGAATTGTTTTGTGTAGGTGGA GAGGAACATTGACTTGGTTTATGGAGGAGGAAGCATTGGCTTGATGGGTCTAATCTCACAAGTTGTCTATGATGGTGGAC GCCACGTGTTAGGGTAACAAACCACCCTCTCTTTCTCTTACAAGAATTTAAATTGCGATTGTGCTTGATGCAACCACAAT TACAGTTGTAATGAGTTTTAAATTGTGGTTGGGGTTGACGCTCGGTCGCAAAATTACAAACCAATATTGAGGTGATGTGG CCGCAATTGCGGTTGCTATGCGGACTCCAAAACCATTGCAATTGTACACTGCAATTTAAAACCTTGTTTCTTTTTTCTTG TATTATTTATGCTGATGAATTTTCCTCATGATGGCAGAGTGATTCCCAAGACACTTATGCCAAGAGAGGTACTTGTTTTT TTTCTTTTGAATTTGAGGCTGATTATGCATAATGATAGTTTAATTGACAATAATTAATTGGTTAATGTGTTCAGATCACT GGAGTGACTGTAGGAGAAGTAAGAGCTGTTTCAGGCATGCACCAACGCAAGGCTGAAATGGCTAGACAAGCAGATGCATT TATTGCCTTACCAGGTTTTTCTCTTTTATAGTATTTCTTCTTCATGTTCTTTTCTTTTTCATCCTAATAATTTATGAAGT TATCTACGAAAGTTTCTTTTTTCTTCATGTATTGTGATTATGGATATTAATTCGTTTGAAATTGTTCTTCCAATAGGTGG ATATGGCACCCTTGAAGAACTGTTGGAAATCATCACCTGGGCTCAGCTAGGCATCCATGACAAACCGGTAAGCTTTTTCA AACAAAAATTCCTTTATTTTTGAGACTAATTGTTCATGTTAATAGTATTAGATAATGATTTTTGTAGTTATCTAGTTAAC AAAAGCCTTTTTTCTCGTGATAGAAAATCATCAAATAATTCCTTACAGAAATGTTCCATTGAAATCCCTTTCCTTGAGAA AGAAAGTCAAAGTAAGAGGCATTATGGTGTCTGTTTACAATTCAAATGGGATAAAAAGTCCATTAATGATTATTATTGTA ATGGGATTAAAATGGAAACTAATGTGAAAAAATTAAAATTAAATGGGATGCAATTGAATGCAGGTGGGGTTGTTGAACGT GGATGGGTACTACAACTCGTTGCTGGCATTCATAGACAAAGCAGTCGATGAAGGTTTTGTAACACCAGCTGCCCGTCACA TAATTGTTTCTGCCCATACTGCCCAAGACCTCATGTGCAAGCTTGAGGTACATAACAATCATTATCTCCATCATCGTACA TCAGTTTGCCATTTTTCAACAACTGAATGCTAGATTTCGTCTCCAATAAAAGTGTTAGCATCCCATAAGTTAATCAATAC GAGTAGTAAAAAGAAATACACTTATGGTCCTTGCCCAGTGCTTAAGTTTTCATATGCGAAATTGATTATTCACTCCAATT TTGTTGTCACAGTGAGATAAAAAGTGA
CDS sequence (LotjaGi1g1v0427900.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAACTTCAACAACAACAACCCATCAAGTCTAGGTTCAGACGCATCTGTGTCTACTGCGGTAGCAGCCCTGGAAAGAG CCCCAGCTACCAACTCGCTGCTATTCAACTTGGGGAACAATTGGTGGAGAGGAACATTGACTTGGTTTATGGAGGAGGAA GCATTGGCTTGATGGGTCTAATCTCACAAGTTGTCTATGATGGTGGACGCCACGTGTTAGGAGTGATTCCCAAGACACTT ATGCCAAGAGAGATCACTGGAGTGACTGTAGGAGAAGTAAGAGCTGTTTCAGGCATGCACCAACGCAAGGCTGAAATGGC TAGACAAGCAGATGCATTTATTGCCTTACCAGGTGGATATGGCACCCTTGAAGAACTGTTGGAAATCATCACCTGGGCTC AGCTAGGCATCCATGACAAACCGTTATCTAGTTAA
Protein sequence (LotjaGi1g1v0427900.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MELQQQQPIKSRFRRICVYCGSSPGKSPSYQLAAIQLGEQLVERNIDLVYGGGSIGLMGLISQVVYDGGRHVLGVIPKTL MPREITGVTVGEVRAVSGMHQRKAEMARQADAFIALPGGYGTLEELLEIITWAQLGIHDKPLSS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
Gene3D | 1 | 143 | 143 | 3.0E-61 | – | |
PANTHER | 4 | 142 | 139 | 1.9E-91 | – | |
PANTHER | 4 | 142 | 139 | 1.9E-91 | – | |
SUPERFAMILY | 11 | 142 | 132 | 4.12E-45 | – | |
TIGRFAM | 15 | 142 | 128 | 2.5E-44 | ||
Pfam | 58 | 142 | 85 | 1.7E-28 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0427900.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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