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Field | Value |
---|---|
Gene ID | LotjaGi1g1v0431400 |
Transcript ID | LotjaGi1g1v0431400.3 |
Related isoforms 3 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | 26S proteasome non-ATPase regulatory subunit 3; TAIR: AT1G20200.1 PAM domain (PCI/PINT associated module) protein; Swiss-Prot: sp|Q06364|PSMD3_DAUCA Probable 26S proteasome non-ATPase regulatory subunit 3; TrEMBL-Plants: tr|A0A0B2PNC3|A0A0B2PNC3_GLYSO Putative 26S proteasome non-ATPase regulatory subunit 3; Found in the gene: LotjaGi1g1v0431400 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:92636961..92640409) extracted from Lotus japonicus Gifu genome v1.2.
ATGACTCAAGATCTTGAGATGAAGGATCGCTCAACGCCTTCAAACTCGGTTTCGACGCCTGTTCCTTCTACTCTGCACCG TAAGAATCTTGAATCTTCCTTCAACTACTACTACTCTAACCGTTTCAAATTTCTGTCAAATCATCGTTTCTACTGAAATT AACTTTTTGGTTTTTGATCTGGGTATCGCAGATTTGAAGGAGATAGCTTCACTCATTGAGACCGGTTCTTACTCGAAAGA AGTTCGGAGAATTGCGCGTGCTGTTCGCCTCACAATTCAATTGAGGCGCAAATTGACTGCTTCGATTATCTCGTCTTTTC TCGATCATGTTCTCACTCCCGGTTCTGAGGCTCATGCCAAATTGTCTGCTTATCTTCCCAAGGTAACTTCCATTGTTAGA TTCAGGGGCTGTTGCTGTTGAAAATAGTTTCAGATTTCAATTTTGCACTTGTCATCTGCTTATTGTAATTTAATGTATGA AGGGGATGAATATAGTTGGGTGTTTTTGGCTGATGTGAATGAATTATTCCTCTATAGAAAGTATATGTTTTAGTCACTTA GGTCTATTGTCGAAACTCGAATGCACAATTTACCCCATTTTCTTCCCATGGCACAACTGATATAAGTATATAACTTGATA GATATTGACCCTGATTAGCTATGCATGTGTGGAAGATTCATATAATTTTACGAGTGGGAACTTGATGAGGGTGGAAGCAC ATTATTTGATGCTCTCTCTCTCTCTCTTGTGGCTATATTTACCTGGGAAATGTTGGATTGTTTCCTTGCTATGCTTTTAC TGTGTATTGAATGGTCTTTGAAGTCATGAATTTTTTGAATGATTACACAGGAGGATGATCATGAGATGGAAGTGGATGCT GCAACTTCTGCTATTCAAGCAACTTCTGCTATTCAAACACCGGCCAAACATTTGCTTCCTGAGCTAGAAATCTACTCTTA CCTTCTTGTATTACTTTTTCTGATTGATCAGAAAAGATACAATGAGGTCAGTTCCATCTTACTTGTATTTTTTTGCTGCA CCAACTATTAACTGATTATATATGCTTAAGCTGCTCTATTTTTTCGTTTCAGGCCAAAGCCTGTTCCTCAGCTAGTGTTG CTTGGCTGAAGAACGTGAACAGAAGAACTGTTGATGTTATTGCATCCAGACTGTATTTTTACTATTCTTATAGCTATGAG CTCACGGGTGATCTTGCTGAAATTCGGGGGTGAGTGTGGTGCTTATCTATGTATTAAACAAATCAAAATTGTTAAAAATT CAATTATTTTTAAGTAACACATTTTAACAAAACTTTGTGTTTCATCTTTTCAGCAATCTCCTTGCTTTGCACCGGATTGC CACCCTGCGTCATGATGAGTTGGGTCAGGTTTGTTTCATCTTAGAACTTACACAGAGGTTTTTTTAAGTAAAGGCTTATG CTGTTGTACTTACCTGTTGATGCAATGCAGGAAACCCTTCTTAACCTGTTACTTCGCAACTACCTTCACTACAATCTATA TGATCAGGCGGAGAAGTTAAGATCTAAGGCTCCACGGTTTGAAGCACATTCAAACCAGCAGGTATGGTAGTTTTATTAAC CTAAGCATAGAAAAAAAAAGTTTCAATATCAATGGTAGATAATCTCTGTGGGAATGCTGAATCATTTACTGATTAAGTAT TATAATTTTGTATCTATTATAGTTGATTGTTGTTAAAAGTCTTTTTTTAATTCGTTTCCCTTCACTTGTCCATATTTTTG TCAGTTCTGTCGCTATCTCTTTTACCTTGGGAAGATTCGGACGATTCAGTTGGAGTACACCGATGCGAAGGAATCTCTTC TGCAAGCTGCTCGGAAAGCTCCAGTTGCAGCACGGGGTTTCCGAATTCAATGTAACAAGTGGGCTGTGATAGTGCGTTTA CTGCTGGGAGAAATACCTGAGCGGACTGTCTTTATGCAAAAAGGAATGGAGAATGCTCTGAGGCCTTACTTTGAGCTTAC TAATGTAAGTTCACTTATGATCCAAATGAAATATTTTCCTACCTAGTTCTAATGTCATTGTAATTTATTCAGCCTCCCTA TATCTCTCTTAATCACAACAATTGAACTCCTGTATTTTGTATAATTATAAATTTAGACATCCTGTTTGTTCATCATGTGG TGATAGGTTGCGTGCCTTCCACTCTTTTGTCTTGGAAATGTTTTAGCCATTTTATTCTAATTCGGGAATCACTCTACTTT TAGAAATTATAAAGAGGGAAATCAAATAACAGAAACTTGGATAAATTGTATGTGTAGTGATTCCCAACAATGACCAAATC CTTTTTCCTACTATGCGTGGTCTGCTGCAAGGATTACCATAATGAATTGTCGTGAATCAAGTCTAATGATAGGCCATTTA AATCTAAATCTCTCTTTTTAGTTTGATGTATTATTATTCTTTGTCTCTCTCTAAATATAACTATTTGACTATCTTCTATC TTATCCATCCTTCTTATCGGTGCTTTTACAAATCCTCTCTATACATGTGCAAACCACCAAATATGAAACTTTTATTTCTC TTTTACAGTTACAATAAATTTTGGGTACATAGGATTGGAACTATTGACCTCTTAACCGGTAAACGATGTTGAAAATGATA TTAATATGTAACCACTTCAGTGATGATTGTTTCTAAACAAAAAATATTCTTACTGAAAACTCCCTTGTATTTCTCCTTAT GTTTTTAATATAGCTCAAGGTCATCGTTAGTGGTCAAGATCTCGCAAAACTAGGGTCTGTATCAAAACACAATTTTATGC ATTTGTTGAGCCTTTGTTCAATCTTTGATAAATTCTCTATTTTTATCATAATTAGTTTTTTTTATTTATATTCATAGTAA TGTTATTTGCTGAACTTCTCTGTGGTAGTGATACTACTTATGTTGTGGAATTTCAGGCTGTCAGGATTGGAGACTTGGAG CTTTTTAGGAATATTGCAGACAAATTCGCTACCACCTTCAATGCAGACGGAACTCATAATTTGATTGTACGCCTGCGGCA CAATGTCATCAGGACTGGTTTACGTAACATCAGCATCTCATACTCCCGCATCTCATTGGCAGATGTTGCTAGAAAATTGA GGTTGAACTCTGCAAGTCCCGTTGCTGATGCTGAGAGCATTGTATCAAAGGCTATCCGTGATGGGGCAATTGATGCTACA TTGGATCATGCAAATGGTTGGATGGTCTCTAAGGAAACTGGAGATATTTACTCCACCAATGAGCCTCAGTTGGCTTTCAA TTCTAGGATTGCCTTTTGTCTTAACATGCACAATGAGGCTGTGCGAGCCCTGCGTTTTCCGCCGAACACACACAAAGAAA AGGAAAGTGCTGAGAAGAGGAGAGAGAGGCAACAGCAAGAGCAAGAACTAGCTAAGCATATTGCAGAGGAGGATGATGAC GACTTCTGA
CDS sequence (LotjaGi1g1v0431400.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACTCAAGATCTTGAGATGAAGGATCGCTCAACGCCTTCAAACTCGGTTTCGACGCCTGTTCCTTCTACTCTGCACCA TTTGAAGGAGATAGCTTCACTCATTGAGACCGGTTCTTACTCGAAAGAAGTTCGGAGAATTGCGCGTGCTGTTCGCCTCA CAATTCAATTGAGGCGCAAATTGACTGCTTCGATTATCTCGTCTTTTCTCGATCATGTTCTCACTCCCGGTTCTGAGGCT CATGCCAAATTGTCTGCTTATCTTCCCAAGGAGGATGATCATGAGATGGAAGTGGATGCTGCAACTTCTGCTATTCAAGC AACTTCTGCTATTCAAACACCGGCCAAACATTTGCTTCCTGAGCTAGAAATCTACTCTTACCTTCTTGTATTACTTTTTC TGATTGATCAGAAAAGATACAATGAGGCCAAAGCCTGTTCCTCAGCTAGTGTTGCTTGGCTGAAGAACGTGAACAGAAGA ACTGTTGATGTTATTGCATCCAGACTGTATTTTTACTATTCTTATAGCTATGAGCTCACGGGTGATCTTGCTGAAATTCG GGGCAATCTCCTTGCTTTGCACCGGATTGCCACCCTGCGTCATGATGAGTTGGGTCAGGAAACCCTTCTTAACCTGTTAC TTCGCAACTACCTTCACTACAATCTATATGATCAGGCGGAGAAGTTAAGATCTAAGGCTCCACGGTTTGAAGCACATTCA AACCAGCAGTTCTGTCGCTATCTCTTTTACCTTGGGAAGATTCGGACGATTCAGTTGGAGTACACCGATGCGAAGGAATC TCTTCTGCAAGCTGCTCGGAAAGCTCCAGTTGCAGCACGGGGTTTCCGAATTCAATGTAACAAGTGGGCTGTGATAGTGC GTTTACTGCTGGGAGAAATACCTGAGCGGACTGTCTTTATGCAAAAAGGAATGGAGAATGCTCTGAGGCCTTACTTTGAG CTTACTAATCTCAAGGTCATCGTTAGTGGTCAAGATCTCGCAAAACTAGGGTCTTGA
Protein sequence (LotjaGi1g1v0431400.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTQDLEMKDRSTPSNSVSTPVPSTLHHLKEIASLIETGSYSKEVRRIARAVRLTIQLRRKLTASIISSFLDHVLTPGSEA HAKLSAYLPKEDDHEMEVDAATSAIQATSAIQTPAKHLLPELEIYSYLLVLLFLIDQKRYNEAKACSSASVAWLKNVNRR TVDVIASRLYFYYSYSYELTGDLAEIRGNLLALHRIATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKAPRFEAHS NQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVAARGFRIQCNKWAVIVRLLLGEIPERTVFMQKGMENALRPYFE LTNLKVIVSGQDLAKLGS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 326 | 326 | 3.6E-190 | – | |
PANTHER | 1 | 326 | 326 | 3.6E-190 | – | |
MobiDBLite | 1 | 22 | 22 | - | – | |
Gene3D | 236 | 334 | 99 | 3.5E-19 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0431400.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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