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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0442400 |
| Transcript ID | LotjaGi1g1v0442400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Trihelix transcription factor GT-3b; TAIR: AT2G38250.1 Homeodomain-like superfamily protein; Swiss-Prot: sp|O80450|TGT3B_ARATH Trihelix transcription factor GT-3b; TrEMBL-Plants: tr|V7B301|V7B301_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0442400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:93947293..93951432) extracted from Lotus japonicus Gifu genome v1.2.
CCCTTCCTTTTTCTCTCTCATCTTTTTGTCCCCCTCTCTCCTCATCAAAACACCCCAAAATCTTCTTCTATATCATTTAG AACCTCTTCTACAATCTTCTCTTCATTCCGGACATTGAAGAAGGATACTGGATTCAAGTCCCATCACGTTCGCTTTGGTT TTCATTTTCTTCTATAATGGAGGGTCATCAACTCCATCACCAACACCATCGACGAAATCAGCATCAGAATCTGAATCAGC ATCAACATCAGCAGCAGCAGCAGCAACAACAACAACACGCTCATAACATAATCGCTAGTGCTAGTGTAAGCGCGGATGTA ACGGATAGGTTCCCTCAATGGAGTATTCAAGAGACAAAGGAGTTCCTCGTGATCCGTGCAGAGCTGGATCAGACTTTCAT GGAGACAAAGAGGAACAAGCAGCTTTGGGAAGTCATCTCCAACCAGATGAAGGAAAAGGGTTACCATAGAAGTGCAGAGC AGTGCAAGTGCAAGTGGAAAAACCTCGTTACCCGCTATAAGGTATTTTTATTCATCTGTAGATATATACATATATCTTAT TCATCAACCCGAATAATAATATTCTATCCACCAAAACCGTGTTTTGTTATTATTAATCACACACACACGCACATATAAAA AAGAGATAATTTTAACCCCTTTCTTTTTGGCTTTTTCAATAGGTTAGGGGGTAAGCTTTTCCCTTTCATGATTAAAGGGA TTTTTCAAAAGTATTTGTGAATTTTGTTTTACATATAAGGTTTTTTACAAGAAAAACCTGTTTGACAAATTAAAAGAGTT TTTTTACAATTTTTTAACAGCTAAAATTAAATTCATGCAATACATTAAGGGGTATCAAAATCCATTTACATAAGTTGAAG TTTTTTTACAAATTAATTTTAGTTCTTAAAAAGCATATTGTAAAGACTAAGAACATGTACTAAAAACTAAAAACATGGTT GTTTGTCAAACTGAACACTAAGAATTGCCATGTAGTTTTTTTATAGATAAAAGTTGGTGTTTTTTGTGATGCAGTTTTAT GTTATGAGCAATATCAGGGTTTCTTATATAGTAATAGTAGTGTTATTTGTGTTTTTGAGATTTGAAGGGATGTGAAACGA TGGAGCCTGAAGCCTCAAGGCAGCAATTTCCATTTTACAATGATCTTCAAGCGATTTTCACGGTGAGGATGCAGAGAATG TTGTGGGCTGAAGCAGAAGGAGGGTCCAAGAAGAAGGGGGTGCACCTCTCTTCCGAGGATGATGATGATGGCAATGAAGA GAGTGAGGGAGATCACAACAAGGCTGGTAACAGCAGAAAGAAGAAAAAGAGTAAGGTCGCGGGCGGAGGAAGCGGTGGTG GTAGTAGCAACTTGAAGGAGATTCTAGAGGAGTTCATGAGGCAACAAATGCAAATGGAAGCTCAGTGGATGGAGGCTTAT GAAGCAAGGGAGAGTGAGAGAAGGTTGAGGGAGATGGAGTGGAGGCAAGCCATGGAAGCATTGGAGAATGAGAGGGTAAT GATGGATCAGAGATGGAGAGAGAGGGAAGAGCAAAGAAGGATCAGAGAGGAAGCTAGGGCTGAGAATAGAGATGCTCTAA TCACAGCTTTGCTCAACAAGCTAAGAAGAGAAGATATGTAGGAATTTCTTGGTTAGCTAGCTTTTATGTTGTTTCTTCTC CTGATGAAGCAAAGCCCAGTTTGAGAGGTTTGTTCTAAGAACTCTCTAATTATGTAGAGATTAAATAGCTTGATAGATAT TGTGGTTATTGCCATGTTGTTATGATATCTCTCTTCTTTAGTTTTACCAACTAAGGCTTTCTTTGATTTAGCAAAAAAAT ACAGGTTCTTTACATTCTTTGATTATAAAAACTTATCCACTCATTAGTTTTTTTTTAATGGTCAAATTTTACCTCCAACT TATGAACAGTTCTTATTATTTAAACTATTGATATTTAGTGTATATTATTTACGATATGCTTATTTTAAGCTAAAATTCAT ATTCACAATGAGAACTTATTATTTGGTGCATGGAGGACAAAACTTAGTAATTTTTCCCTCTAATTTTGTAGTAGTCACTG GCTAGTAATTATGTTTTTTTGTCATGCAGCTATATTATGATTGAGCTTGAGATCTTTTGTCTCCCTTTGTCAAACCAATG AATTTAGGTCTGGTTAATTAAAAAATATTCGGATATGACATTTATAATTTTACATTATCAATTTTTAATTAATATGATAT AATTTTATTGACAAGATATAGATGAGACACAATTTAATTACATACACTTGTAATCTCATTCAGAGACGACGATGGCCAAT GTTTAATGTATATCCCAAAATATAAGAGCACAATTTGTAGTATCTAACTAAAAAACCGGGCGAAAAGATGCATGAAATAT TGTCCACAAGATAATAATGCTCATCGTTCTTCAGACAAAAAAAAAAGATAATGCCATGATCATAATGTCTATCCATATAT ATGGAGACGCACAATTTCAAGATTAATGGAGCATTTGCTAAAAGGCCACACTAGACAAAGTGAGGTTACTTTCATTTATG ATTAAAAAAGAAAATGGTGGAAACCGGTTTTATATAATGATGCTACTCCGATCCTCCATACTTCCATGTGTATGTATAGC TGGATATAGTATTTTCCATTCAGATAAGAATTGTTCATGTCGGTGTGCAAATGTGGCTACATTGTAAAGGGGGAGTCGAC AGTGTGAAATGATGATTTGTGTGAGGGTGAGTTTCATATTTGGCATTTTCATAAGGAAAAAGATTTGATGTGATCCCACA CTCTGCTGACATCCAATAAATACTTTAAGTGAGAAAAAAATGAAAATAGAGAAATAATAGATATGATTTATAATAAATGT GATTAAAAGTTCAAGGTAGATAAAAAATGTGGTGTTTGTTACTTGTTAGATGTCTAGATGATGACTTGAAAAATAATTAG CTAGTTTTCCTTTTAGATGAATCATGACCTGCAATTTGTGGATGCGTGTCATTTTGTCAAAGCTTAACCAATGTATATGC CATGAAGTTAATATTTTTGATAGCTAGCTAGCTAGCAGGGTTCATTTCTGCATGCAAGAGTTCATATTCCAAATGGTTAT TGACATATTGACTACTTGTGTATCTGAGAAAGCTCATCATAGCTGCTGAAAAGTTTCCTGCCTCAGGTATGAATTTATGA CTTGAAAGTAGTGCTTATAAAACAAAAATGACTTTTAAGTAGTTTTATTATAAGCACGTAGACACCTTTAATAGTATAGA AGTACCTATTATTTTCTATTTTTTCTGTTTACATCTCACATTTATCATATCATATAACACATTTATTATTTCTCACTATT TTCCTCCTTTTTAGAGCATCTCCAATGTAAGATTTTTAGTTCTTATTTCTGAACTAAGAACCTAAGAACTGAGTTCTTAA CCATATGACCTAAGAACTGGGTTCTTAACCATATGAGGGGTCTGACGTGGAGTTCTTAAGAATAAGAATTAGATCTCTTA TATAAGGAGTTTTACTTTTTGAGTTCTTAGCATGAAAAAATAATTTTCTTTTCTCTCATTCATCAACTAATATTTAATTT AAGTTTGAATTAGCATTTAAATTAAAAAGATGGGAGGCCGGGCTGGAGGGGCAAAGACGAGTGGGAGAAGAGTGGTGGTG GTGGTGGTGGGGGGAGAGGAAGAGACAGAGCAGAGACCAAAGTGATAGAGAAATTAGAAAGATAATGTCAACTGTACAAT GAAGAGGCCAATTTGACGGCTAAAAGATTGCTCAAATAGCACTTAACGTACCAAATCAACTTTTCCATTAAAGTTTACTA ACTTTCTTAAGTCAAGGCTAATTTGACTAACGTCTGCTACTTTCAGGACTGCCAGAGCCATTTTAATCATCTAAGAACCA ACTTGTAAGTGAGTTCCATTTGTAGGGATCAAAATAATCATTTACCCAATTGCTTCAATTTTTCCTAAGACAAACCGGCC ATTTGGACATGAGTTGATTTGCAAGCAATTAATTTATTCATGATTTCAAAGTGGACCAATTTAGACTAATCAGATAACTA ACTTGTGTTTCAACTAACTAATTAAGTTTTTTATTGACCATACCAATGTTCTCTATTCAC
CDS sequence (LotjaGi1g1v0442400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGGGTCATCAACTCCATCACCAACACCATCGACGAAATCAGCATCAGAATCTGAATCAGCATCAACATCAGCAGCA GCAGCAGCAACAACAACAACACGCTCATAACATAATCGCTAGTGCTAGTGTAAGCGCGGATGTAACGGATAGGTTCCCTC AATGGAGTATTCAAGAGACAAAGGAGTTCCTCGTGATCCGTGCAGAGCTGGATCAGACTTTCATGGAGACAAAGAGGAAC AAGCAGCTTTGGGAAGTCATCTCCAACCAGATGAAGGAAAAGGGTTACCATAGAAGTGCAGAGCAGTGCAAGTGCAAGTG GAAAAACCTCGTTACCCGCTATAAGGGATGTGAAACGATGGAGCCTGAAGCCTCAAGGCAGCAATTTCCATTTTACAATG ATCTTCAAGCGATTTTCACGGTGAGGATGCAGAGAATGTTGTGGGCTGAAGCAGAAGGAGGGTCCAAGAAGAAGGGGGTG CACCTCTCTTCCGAGGATGATGATGATGGCAATGAAGAGAGTGAGGGAGATCACAACAAGGCTGGTAACAGCAGAAAGAA GAAAAAGAGTAAGGTCGCGGGCGGAGGAAGCGGTGGTGGTAGTAGCAACTTGAAGGAGATTCTAGAGGAGTTCATGAGGC AACAAATGCAAATGGAAGCTCAGTGGATGGAGGCTTATGAAGCAAGGGAGAGTGAGAGAAGGTTGAGGGAGATGGAGTGG AGGCAAGCCATGGAAGCATTGGAGAATGAGAGGGTAATGATGGATCAGAGATGGAGAGAGAGGGAAGAGCAAAGAAGGAT CAGAGAGGAAGCTAGGGCTGAGAATAGAGATGCTCTAATCACAGCTTTGCTCAACAAGCTAAGAAGAGAAGATATGTAG
Protein sequence (LotjaGi1g1v0442400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEGHQLHHQHHRRNQHQNLNQHQHQQQQQQQQQHAHNIIASASVSADVTDRFPQWSIQETKEFLVIRAELDQTFMETKRN KQLWEVISNQMKEKGYHRSAEQCKCKWKNLVTRYKGCETMEPEASRQQFPFYNDLQAIFTVRMQRMLWAEAEGGSKKKGV HLSSEDDDDGNEESEGDHNKAGNSRKKKKSKVAGGGSGGGSSNLKEILEEFMRQQMQMEAQWMEAYEARESERRLREMEW RQAMEALENERVMMDQRWREREEQRRIREEARAENRDALITALLNKLRREDM
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 291 | 291 | 3.6E-122 | ||
| MobiDBLite | 1 | 36 | 36 | - | – | |
| PANTHER | 1 | 291 | 291 | 3.6E-122 | – | |
| Coils | 12 | 32 | 21 | - | – | |
| MobiDBLite | 19 | 36 | 18 | - | – | |
| CDD | 53 | 118 | 66 | 3.29495E-22 | – | |
| Pfam | 54 | 138 | 85 | 3.0E-20 | – | |
| Gene3D | 55 | 116 | 62 | 2.8E-20 | – | |
| ProSiteProfiles | 55 | 111 | 57 | 7.294 | ||
| MobiDBLite | 154 | 203 | 50 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Molecular function | Sequence-specific DNA binding | Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. |
Expression pattern of LotjaGi1g1v0442400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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