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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0446900 |
| Transcript ID | LotjaGi1g1v0446900.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Macrophage migration inhibitory factor family protein; TAIR: AT5G01650.2 Tautomerase/MIF superfamily protein; Swiss-Prot: sp|P81529|MIFH_TRISP Macrophage migration inhibitory factor homolog; TrEMBL-Plants: tr|I3SVX1|I3SVX1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0446900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:94568558..94570111) extracted from Lotus japonicus Gifu genome v1.2.
ATGCCGTGCCTGAATCTCTCTACCAACGTTGCCCTCGACGGCGTTGACACCTCTTCCATTCTCTCCGAAGCCACCGCCAC CGTCGCCAAGATTGTTGGCAAACCTGAGGCTGTATGCATTCTCTCTCTCTCTCTCTCTCTACTGTGTTTTCATGCCTCAA TGCTCTCTTTTTTCCCTGTAATTTATTTTCTGTTTATTGTTTTGGCAATCTTATTCATGCTGATTAAAATGGTAAAATTA GAGGCCTGTGTTGTGTAAAATGAACTTAGGGAAGTAAATTATAGGTGGATAACCCTAACATTTTTGTTTTTCTTGTCTTC AAATTGAGGTTTCATTGTCTCAACTGTTATCTGAAAATTAGGGTTTTCAAATTTTTTTCTTTGCTTTTCCAGTGTTCCAG GTTAATTTGCTGTATAAAGATCTTTTTGGTGTGTATGATGATGAGGTTGGAAATGAGTTTCATTTCTAGTTGGTTGGAAA TGAAGGGACACAAACTCTTGGTGTCTGTGTGTGCATATAGCATATTTTGATCTCCATATAATGTTCTATATTTTTCTCTG TTTTGACTATTTTTTCATAGCTTATGGTAGTTTCTTTTTCATTATGTTGAATTAGTTTTATTTAACTTCTAAGAAGGGTG CAAACAATCAAATCAGAATGATTTGAGTATGTATGTTATTTATCAATGCAATGGATCCTTTGATACATGCTCCAAAATGG ATAATGAAATCTTAGGTGGTTATTTTTTAAAAAAAGAAACATTTGACGCATCTGTATTATGATTGATCCTAAAGTTGTTT TTTAGTTTGTAATAATATGTCAAGTTAGCCTTCTCAATCCTCTTGCCAAGGTTGTTCTCTGGTGTTAATGTAGTATATTC ACACTCAAATCAAGCACATCTTAAGAGAGACAGGAAGAGAAGTGAGATATGATTGGCGATGTGATAGAAAAAGAAGATAG AGATAGGAAGAAAAAGTGGTGTGAATGAAATGGAAGAGCAACTAGGGTGCGAATGAATCAAAACCTTTTTTTTGCGATTT CAGCCTTGTATTTCTATAGTATAAAATGAACTCTTCTGGCTTAATAAATTAAAAAAATATTTGATATTTCTTGTTTTTGT TACACTATTCCTCTTGCTTTGCTACAATATTTTCGTCTTCTGTTTTATTCAGATTGTTCTAAAGTCTTTAGATTCTGCTT TTCTTGGTTTTCAGTATGTGATGATTGTATTGAAAGGATCTGTGCCCATATCTTTTGGTGGGAATGAGCAGCCTGCAGCT TATGGTGAATTGGTGTCTATTGGTGGTCTTAACCCTGATGTGAACAAAAAACTCAGTGCTGCAATCGCTTCTATTCTTGA AACCAAGTTGTCTGTGCCCAAGTCAAGATTCTTCTTGAAATTTTATGACACTAAGGCAAGTATCTAGAATTCAGAGTTGT CCTAGAAAAAGGGGTCTTTGCCTAGCGCCCTTTCTTATTCCATTTTTCCTTTTTGTTTAGGCCCATCAGAGTCAAGAATA TGCACAATGTTTGCATGCTTTACACCAGCACTAG
CDS sequence (LotjaGi1g1v0446900.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCGTGCCTGAATCTCTCTACCAACGTTGCCCTCGACGGCGTTGACACCTCTTCCATTCTCTCCGAAGCCACCGCCAC CGTCGCCAAGATTGTTGGCAAACCTGAGGCTTATGTGATGATTGTATTGAAAGGATCTGTGCCCATATCTTTTGGTGGGA ATGAGCAGCCTGCAGCTTATGGTGAATTGGTGTCTATTGGTGGTCTTAACCCTGATGTGAACAAAAAACTCAGTGCTGCA ATCGCTTCTATTCTTGAAACCAAGTTGTCTGTGCCCAAGTCAAGATTCTTCTTGAAATTTTATGACACTAAGGCCCATCA GAGTCAAGAATATGCACAATGTTTGCATGCTTTACACCAGCACTAG
Protein sequence (LotjaGi1g1v0446900.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPCLNLSTNVALDGVDTSSILSEATATVAKIVGKPEAYVMIVLKGSVPISFGGNEQPAAYGELVSIGGLNPDVNKKLSAA IASILETKLSVPKSRFFLKFYDTKAHQSQEYAQCLHALHQH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 121 | 121 | 3.5E-72 | – | |
| PANTHER | 1 | 121 | 121 | 3.5E-72 | ||
| SUPERFAMILY | 1 | 106 | 106 | 1.83E-29 | ||
| Pfam | 2 | 107 | 106 | 6.0E-19 | ||
| Gene3D | 2 | 102 | 101 | 6.0E-36 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0446900.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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