Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0450900 |
| Transcript ID | LotjaGi1g1v0450900.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | FBD-associated F-box protein; TAIR: AT4G00160.1 F-box/RNI-like/FBD-like domains-containing protein; Swiss-Prot: sp|Q8LF09|FDL23_ARATH F-box/FBD/LRR-repeat protein At4g00160; TrEMBL-Plants: tr|G7JB15|G7JB15_MEDTR F-box/RNI/FBD-like domain protein; Found in the gene: LotjaGi1g1v0450900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:95014836..95019725) extracted from Lotus japonicus Gifu genome v1.2.
GGGAAATCTAATTCCCCATTCTATCGTTTCTCGAAACCAAAGAGGTGGTTGCCAACAGCGTTTTGTCAAAGAGATGGAGG AATCTCTGGCGGTCAGTACCCGCTCTCAACTTGTACATCGACACAGAGGACCACAGCGAAGATGAGTGTTCCTTCTTCAA GGACTTCATCTACTCCGTTCTTTTCCGAGTATTAGCAAATGGGTCAAGTTTGTGACACAATGTAGAGTTGAGAACCTTAA TCTCTATGTCACAACTCACTTGCAATTCCCACCCGAATTGCCCATTAGATTTCTTAGCTGCACAACGCTGGTGGTTCTCA AATTGCATGGGCTACATTTGAAGCTTATTTCTGTTGGGAATTCAATTTCTTCTATTGGATTTCCCTCGCTCAAAATATTG CGTTTAACACATGTTTTATTCACAAGTGGTCCGAGTTTCTAGCTGGATGCTCAATTCTTGAGGATTTGTATGCACATGAT ATAGAGTTCCTCACCGATTATGAGTCCTCTTTTTATGGTCAAGAGTTTAAAAGCTTAACCTTATCCAAATTGACCACAGC AAATATTGCTGGTTACCATTATTTTCCGGTGAATCCATTTTCTAATGTGAAGTTTCTGGGCTTAGAAATAAAACAGGTTT CATTATGATTTATATATGGAATGGAAAAGATTAATTTGATTGATCTATGTATTGTTTTTTTGTTTCTTCATTTGTCTTTC TAAATCATTTAGGTGCATCATGACTTTCCTTCCTTTCATAATTTGACCCAATTGGAGCTTTTGATTGAACTGGATAAGTC GCAATTGCTAGCAGAAATGCTCAAGCACTGCCCTAAGCTTCAAAGCCTTTCCCTTCAGGTTCGGGTATGCAAAGTTTAAG TATGATTTCTGTTTTTTATTTTTTTTAATATTCCTTCATGTTTTATAAATGTGTATTGGTAATCTACATACAAGGATTGT AGGAGGAAGATTGGATGCGTGGTCCAGAAAATTGGGCGGATCCAGATTTTGTTCCTGAATGCCTTTTGTTAAACCTGAAA ACCTGCTCTTTTCGATATTTTGAAGACCTAGAAGTTGAGCTTCAGTTAGCAAGATATATTTTGAAGAATGCTAGAGTTTT ACAAACCATGAAAATCTTGACCGGGCCTGCAATCAGCCGAAGACAAATCAAAATGATTAGAGAAAAGTCATCCTCAAGCA AGCTCAGTCCTTCAAGATGTCAAATTATAGCTCATCCGATGTACAGCCATGTAAGCAGTAGTTCCTATATCCTTCTTGTC TTTTCATTAATTTCTACCTTGCAACTACTGTAGTTGGTTGTTTGAACTATGAACGTCGAAGGGCAAGAACTTTGTCTTGG TGGACAAGTTAAGGAAAAATGTTTCTCACATGATTGAGCCCGCCAACTAACATTATAGTTGTTGCTTGTGGGCTTTATTC TTAAATTATAAAATTTCTTTTGTGTTTAAATGCTATATTTTGTTGACATTTTTGAAGATATAATACTTTTTGCTCTCTAA TTCTACGAGCCATATATTACTAGAATATTAAGGCAGTGTTGGCTGAGCAAAAACAACCAACCTGCTACAACTAAGAAAAA AAGTTGGGTTCCAACTGATTCAGATCATAATTAGATAATTTGGATCTTATTGTGATTCAAACTATTGGTAATATTGATCT TATCCTTATACGAACTATTCTTCATAGCTTTCCTCACAAAATTGGAAAGACCCTAAAGTTTGTGAATTGATATCTATTAT GTCTAACTATTTAGAAGAACTGAAGAAGTCCAAAGTCAGGTCTTAGAATTCAAGAGACAGATAGAAAAAGATAGAGGGTG ATAAAGAATTTAGAGACGAGATTTGAAATAGTGTGAGAAAGAAAGAGATGCAAAGAAATTGGAAGGTTTTGATGTTATAT GGAGACATAGTTTCTATTTTAAGGGTACAATGTCAGACATAGGTTGTGTTTTGTGAACATCAACAATATACCCAAAAAGA AAAAGGAGTTGATTCAACTTGAAAAACTGAACCAAACCAAACCAAATTGGAAATACAATTCAATCAAACTAACTGAAATG GTTATGAATTGAACCGATTCTATGGTTTGATGAACTGCTTGGCTCAGTGAACTGGTTTTCATACTGTGAACTGAGTTTGA ACCTGTTTTAAAATCATTTTTCAGAACTTGTTCAGCCTCAATAATTGGGTTTGTAAAATCAGTATCAGATCTGGTTCCAT GAGTTCAAGAACCAGTTTACCTAACATTAGTTGTTTATTTTGAAGAATTAGTTTTTATAAAGTCCTACAACCAGTTCAAA AAGAAAACTGCCCAAGACCCAGTGTGAGAACTATTTTCATTAATTTTAGAACTGGTTATGCGACCACTCTATATACTCCA CCAGTTTGCTTGCATATTAAATGATAACAGAATTAGAATCCATGTCTTAATTCATCAAATTAAATAACAGTAGTAGAAGG GGTTTGTTCTCATTGCTTTGTAGGAAGAGAGTGCCTTAAATGGTTCCCCAGATCTTGTTAAACTGCCAGCATATGAAAAT TCGTATTAAGGAATCCACTTTTCGGGTTTTGATCAAGGGCTTATGTAGAATTAAGGGGGTGGATTATGCCATTATGATAC TGACTAGTATGATAAAAGATAGTCATATAGTTTGGATGGGAAGATATGTTCTTTAATAATGCCATCATGGAGTGAATAAA AGGATGTGACTATTGTTGAGGCTTTGGTTGTTTAAGGAGGTATGAGGAAACTAGGATAAGGAACTTGGTGAAGGAAGGGA GGGGTTTGTATTCTTTGTAGATTTTGAACCAGATGAAAGAAGATAGAGTTAAGCCTGACATTGTTTGTTATATTATAGTT TCTTGCAAAAGGGGATTTTGTGAAGTTAGATGAACTATTTGATGACATTCTTGAATTGGGACTCATTCATGATGTTTAAC TTACAATTTGTGTGTACAAATGGTTTGTGCAAGCAGAACAAAGTAGATGAAGTTTGGATGCAATCTGATTGTGGGTATTA TGCAATACTTGTGTTGGTTGGGACTTACTTCAGTCCTGATGTTTATACTTACAATGTGTATATAAATGGTTTGTCCAAGC AAAACAAAGTAGATGAAGCCCTTAAGAATGTCTCTTTTATTGATAAGTTAGGATGCAATCCTAATGTGATTAGTAACAAT ATTTTATTAGGCATTTTTGTGTGGCTGGAGATTTTAGTAAGGCAAGTGGATTAATGAAGAAAATGGGGATAGAGTATTGG GATCAACTTGCATACACATAGGAACATGCTTGATAGTTTGGTTGGAAAAGTTTTGATATATGAAACATGCCTTATGTTGG AGAAGACGTTGGAGGAGTGTTTTGATCCTAGATCTTCAACATTTGATAATTTCCCAAAATAATGACTATTATTAAAGTGG CCAGGGCGATAGACTTGACTTTGAAGTTTATAGGCTTTCTCTATATTTTGGGTTTGAAGAGCTAAACTATATCCCCAGTT AGCAGGTTCGAGATACTAAAATTCTTCTACCAGCATTTGAAAACAAAATCAGTAAATCACTAATTGTGCTCAACCATGGT TCTTTGCATAATCTATATCGATAAAGAGGCTGCTCCATTTTCAACTAAATGGAAATCATGACTTTTCTGTCTTGGTGGTG ATTGATCTGTTGAGAAGTATTTAGGATTAAATGGTATAATTAATTCTTACCATTGTATTTTCAGTTTTTGACCTGTGAAC CACGGGTAAATATGCTCCAGTTGGTCTGGTTTTGTTGAACTTTAGACTTAAAACAGTCTTCTCCCTGAGTACATTGTTTA TCATGAAACTAATATCTTAGAAGTCCAAGCTTAACATTAAGTTTTACATATGACTGAGTTAGATTTGTCAAATACTAACT ACAACCTGGTTCTTTAATTTATACATTAGACAGAAACTTTAGAAAACAATAAGCTACAAATAGTTAATTTATTTTCTAAA ATCTATTTTTTAAGATTTTGACCTTTTCTTTCATGCTCAAAAGTCAAAGTGATTCACGGATACAAATAACTCTTGTTTAA GTCAAACTAGTTTGTTTTAGTTTCATTTTGTTGTTTACTCTATATACCCTTCCTCTGTTTTTCATTAATGATAAACATAT GTTATGGTGCAGCAAAGAAGTTAGTTACGGCAGAGGCTAAGCTAAGCGGAAGAGGAAACACAGCCATATCATAATGTGGG AGTAAAGGTTGAAAATTTGCTATGATGTAATCCCAAGTTGTATTTCCATTTGTAAGACTCATGTTGGATTCTTGAGATGT ACTTAAACTGATATATGAAGGAAATTTGAACTTGGTTTTAATTGATTCCATCATTATGATTGTAAATTAACACCAAATCC ACCCTGTATCATGAAGTGAAAGGATAACCCAATCATGAAATACATACCATCCAATATTCAAATTTTGACTTCTCAAATTT TGTCCTTTGAGGCAACTTTGGCAATTTGGATTCCAACATTTCCACTTGTGTCATTTCTCAGTTTCTTACGTGGTTGAGGA CATGACACTGATGATTTAAGTTTTCTCTTCGTGCATGGAGGTCTATCATCTAAACTTTGAACTGAATCAACATTAATCTT ATCAAGGAAATGATATTTCAAGGGTATTCTTGTCAAATACATGCATCCCAAAATGAGACGTATTCTATTTCAAGTGCCCA TGATGAAGGGAATAGTATGAAGCAAATTCTTTCTTACCCTTTTGAAACCAAATATAACCATCATGTTTAGTGCAGTGTAT CTTCCATTTCTTTGTCATCCCGAGGCTTGAGAAATACAGGGTTTGACACATCACAACCATGTTTCCTAGTGAAACCAGTT GGAACCTTCT
CDS sequence (LotjaGi1g1v0450900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTCAAGCACTGCCCTAAGCTTCAAAGCCTTTCCCTTCAGGAGGAAGATTGGATGCGTGGTCCAGAAAATTGGGCGGA TCCAGATTTTGTTCCTGAATGCCTTTTGTTAAACCTGAAAACCTGCTCTTTTCGATATTTTGAAGACCTAGAAGTTGAGC TTCAGTTAGCAAGATATATTTTGAAGAATGCTAGAGTTTTACAAACCATGAAAATCTTGACCGGGCCTGCAATCAGCCGA AGACAAATCAAAATGATTAGAGAAAAGTCATCCTCAAGCAAGCTCAGTCCTTCAAGATGTCAAATTATAGCTCATCCGAT GTACAGCCATCAAAGAAGTTAG
Protein sequence (LotjaGi1g1v0450900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLKHCPKLQSLSLQEEDWMRGPENWADPDFVPECLLLNLKTCSFRYFEDLEVELQLARYILKNARVLQTMKILTGPAISR RQIKMIREKSSSSKLSPSRCQIIAHPMYSHQRS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 81 | 81 | 4.8E-19 | – | |
| PANTHER | 1 | 81 | 81 | 4.8E-19 | – | |
| Pfam | 28 | 72 | 45 | 1.0E-14 | ||
| SMART | 33 | 105 | 73 | 4.1E-7 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0450900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…