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Field | Value |
---|---|
Gene ID | LotjaGi1g1v0450900 |
Transcript ID | LotjaGi1g1v0450900.2 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | FBD-associated F-box protein; TAIR: AT5G56430.1 F-box/FBD-like domains containing protein; Swiss-Prot: sp|Q9FM88|FBD25_ARATH Putative FBD-associated F-box protein At5g56430; TrEMBL-Plants: tr|G7JB15|G7JB15_MEDTR F-box/RNI/FBD-like domain protein; Found in the gene: LotjaGi1g1v0450900 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:95014836..95019725) extracted from Lotus japonicus Gifu genome v1.2.
GGGAAATCTAATTCCCCATTCTATCGTTTCTCGAAACCAAAGAGGTGGTTGCCAACAGCGTTTTGTCAAAGAGATGGAGG AATCTCTGGCGGTCAGTACCCGCTCTCAACTTGTACATCGACACAGAGGACCACAGCGAAGATGAGTGTTCCTTCTTCAA GGACTTCATCTACTCCGTTCTTTTCCGAGTATTAGCAAATGGGTCAAGTTTGTGACACAATGTAGAGTTGAGAACCTTAA TCTCTATGTCACAACTCACTTGCAATTCCCACCCGAATTGCCCATTAGATTTCTTAGCTGCACAACGCTGGTGGTTCTCA AATTGCATGGGCTACATTTGAAGCTTATTTCTGTTGGGAATTCAATTTCTTCTATTGGATTTCCCTCGCTCAAAATATTG CGTTTAACACATGTTTTATTCACAAGTGGTCCGAGTTTCTAGCTGGATGCTCAATTCTTGAGGATTTGTATGCACATGAT ATAGAGTTCCTCACCGATTATGAGTCCTCTTTTTATGGTCAAGAGTTTAAAAGCTTAACCTTATCCAAATTGACCACAGC AAATATTGCTGGTTACCATTATTTTCCGGTGAATCCATTTTCTAATGTGAAGTTTCTGGGCTTAGAAATAAAACAGGTTT CATTATGATTTATATATGGAATGGAAAAGATTAATTTGATTGATCTATGTATTGTTTTTTTGTTTCTTCATTTGTCTTTC TAAATCATTTAGGTGCATCATGACTTTCCTTCCTTTCATAATTTGACCCAATTGGAGCTTTTGATTGAACTGGATAAGTC GCAATTGCTAGCAGAAATGCTCAAGCACTGCCCTAAGCTTCAAAGCCTTTCCCTTCAGGTTCGGGTATGCAAAGTTTAAG TATGATTTCTGTTTTTTATTTTTTTTAATATTCCTTCATGTTTTATAAATGTGTATTGGTAATCTACATACAAGGATTGT AGGAGGAAGATTGGATGCGTGGTCCAGAAAATTGGGCGGATCCAGATTTTGTTCCTGAATGCCTTTTGTTAAACCTGAAA ACCTGCTCTTTTCGATATTTTGAAGACCTAGAAGTTGAGCTTCAGTTAGCAAGATATATTTTGAAGAATGCTAGAGTTTT ACAAACCATGAAAATCTTGACCGGGCCTGCAATCAGCCGAAGACAAATCAAAATGATTAGAGAAAAGTCATCCTCAAGCA AGCTCAGTCCTTCAAGATGTCAAATTATAGCTCATCCGATGTACAGCCATGTAAGCAGTAGTTCCTATATCCTTCTTGTC TTTTCATTAATTTCTACCTTGCAACTACTGTAGTTGGTTGTTTGAACTATGAACGTCGAAGGGCAAGAACTTTGTCTTGG TGGACAAGTTAAGGAAAAATGTTTCTCACATGATTGAGCCCGCCAACTAACATTATAGTTGTTGCTTGTGGGCTTTATTC TTAAATTATAAAATTTCTTTTGTGTTTAAATGCTATATTTTGTTGACATTTTTGAAGATATAATACTTTTTGCTCTCTAA TTCTACGAGCCATATATTACTAGAATATTAAGGCAGTGTTGGCTGAGCAAAAACAACCAACCTGCTACAACTAAGAAAAA AAGTTGGGTTCCAACTGATTCAGATCATAATTAGATAATTTGGATCTTATTGTGATTCAAACTATTGGTAATATTGATCT TATCCTTATACGAACTATTCTTCATAGCTTTCCTCACAAAATTGGAAAGACCCTAAAGTTTGTGAATTGATATCTATTAT GTCTAACTATTTAGAAGAACTGAAGAAGTCCAAAGTCAGGTCTTAGAATTCAAGAGACAGATAGAAAAAGATAGAGGGTG ATAAAGAATTTAGAGACGAGATTTGAAATAGTGTGAGAAAGAAAGAGATGCAAAGAAATTGGAAGGTTTTGATGTTATAT GGAGACATAGTTTCTATTTTAAGGGTACAATGTCAGACATAGGTTGTGTTTTGTGAACATCAACAATATACCCAAAAAGA AAAAGGAGTTGATTCAACTTGAAAAACTGAACCAAACCAAACCAAATTGGAAATACAATTCAATCAAACTAACTGAAATG GTTATGAATTGAACCGATTCTATGGTTTGATGAACTGCTTGGCTCAGTGAACTGGTTTTCATACTGTGAACTGAGTTTGA ACCTGTTTTAAAATCATTTTTCAGAACTTGTTCAGCCTCAATAATTGGGTTTGTAAAATCAGTATCAGATCTGGTTCCAT GAGTTCAAGAACCAGTTTACCTAACATTAGTTGTTTATTTTGAAGAATTAGTTTTTATAAAGTCCTACAACCAGTTCAAA AAGAAAACTGCCCAAGACCCAGTGTGAGAACTATTTTCATTAATTTTAGAACTGGTTATGCGACCACTCTATATACTCCA CCAGTTTGCTTGCATATTAAATGATAACAGAATTAGAATCCATGTCTTAATTCATCAAATTAAATAACAGTAGTAGAAGG GGTTTGTTCTCATTGCTTTGTAGGAAGAGAGTGCCTTAAATGGTTCCCCAGATCTTGTTAAACTGCCAGCATATGAAAAT TCGTATTAAGGAATCCACTTTTCGGGTTTTGATCAAGGGCTTATGTAGAATTAAGGGGGTGGATTATGCCATTATGATAC TGACTAGTATGATAAAAGATAGTCATATAGTTTGGATGGGAAGATATGTTCTTTAATAATGCCATCATGGAGTGAATAAA AGGATGTGACTATTGTTGAGGCTTTGGTTGTTTAAGGAGGTATGAGGAAACTAGGATAAGGAACTTGGTGAAGGAAGGGA GGGGTTTGTATTCTTTGTAGATTTTGAACCAGATGAAAGAAGATAGAGTTAAGCCTGACATTGTTTGTTATATTATAGTT TCTTGCAAAAGGGGATTTTGTGAAGTTAGATGAACTATTTGATGACATTCTTGAATTGGGACTCATTCATGATGTTTAAC TTACAATTTGTGTGTACAAATGGTTTGTGCAAGCAGAACAAAGTAGATGAAGTTTGGATGCAATCTGATTGTGGGTATTA TGCAATACTTGTGTTGGTTGGGACTTACTTCAGTCCTGATGTTTATACTTACAATGTGTATATAAATGGTTTGTCCAAGC AAAACAAAGTAGATGAAGCCCTTAAGAATGTCTCTTTTATTGATAAGTTAGGATGCAATCCTAATGTGATTAGTAACAAT ATTTTATTAGGCATTTTTGTGTGGCTGGAGATTTTAGTAAGGCAAGTGGATTAATGAAGAAAATGGGGATAGAGTATTGG GATCAACTTGCATACACATAGGAACATGCTTGATAGTTTGGTTGGAAAAGTTTTGATATATGAAACATGCCTTATGTTGG AGAAGACGTTGGAGGAGTGTTTTGATCCTAGATCTTCAACATTTGATAATTTCCCAAAATAATGACTATTATTAAAGTGG CCAGGGCGATAGACTTGACTTTGAAGTTTATAGGCTTTCTCTATATTTTGGGTTTGAAGAGCTAAACTATATCCCCAGTT AGCAGGTTCGAGATACTAAAATTCTTCTACCAGCATTTGAAAACAAAATCAGTAAATCACTAATTGTGCTCAACCATGGT TCTTTGCATAATCTATATCGATAAAGAGGCTGCTCCATTTTCAACTAAATGGAAATCATGACTTTTCTGTCTTGGTGGTG ATTGATCTGTTGAGAAGTATTTAGGATTAAATGGTATAATTAATTCTTACCATTGTATTTTCAGTTTTTGACCTGTGAAC CACGGGTAAATATGCTCCAGTTGGTCTGGTTTTGTTGAACTTTAGACTTAAAACAGTCTTCTCCCTGAGTACATTGTTTA TCATGAAACTAATATCTTAGAAGTCCAAGCTTAACATTAAGTTTTACATATGACTGAGTTAGATTTGTCAAATACTAACT ACAACCTGGTTCTTTAATTTATACATTAGACAGAAACTTTAGAAAACAATAAGCTACAAATAGTTAATTTATTTTCTAAA ATCTATTTTTTAAGATTTTGACCTTTTCTTTCATGCTCAAAAGTCAAAGTGATTCACGGATACAAATAACTCTTGTTTAA GTCAAACTAGTTTGTTTTAGTTTCATTTTGTTGTTTACTCTATATACCCTTCCTCTGTTTTTCATTAATGATAAACATAT GTTATGGTGCAGCAAAGAAGTTAGTTACGGCAGAGGCTAAGCTAAGCGGAAGAGGAAACACAGCCATATCATAATGTGGG AGTAAAGGTTGAAAATTTGCTATGATGTAATCCCAAGTTGTATTTCCATTTGTAAGACTCATGTTGGATTCTTGAGATGT ACTTAAACTGATATATGAAGGAAATTTGAACTTGGTTTTAATTGATTCCATCATTATGATTGTAAATTAACACCAAATCC ACCCTGTATCATGAAGTGAAAGGATAACCCAATCATGAAATACATACCATCCAATATTCAAATTTTGACTTCTCAAATTT TGTCCTTTGAGGCAACTTTGGCAATTTGGATTCCAACATTTCCACTTGTGTCATTTCTCAGTTTCTTACGTGGTTGAGGA CATGACACTGATGATTTAAGTTTTCTCTTCGTGCATGGAGGTCTATCATCTAAACTTTGAACTGAATCAACATTAATCTT ATCAAGGAAATGATATTTCAAGGGTATTCTTGTCAAATACATGCATCCCAAAATGAGACGTATTCTATTTCAAGTGCCCA TGATGAAGGGAATAGTATGAAGCAAATTCTTTCTTACCCTTTTGAAACCAAATATAACCATCATGTTTAGTGCAGTGTAT CTTCCATTTCTTTGTCATCCCGAGGCTTGAGAAATACAGGGTTTGACACATCACAACCATGTTTCCTAGTGAAACCAGTT GGAACCTTCT
CDS sequence (LotjaGi1g1v0450900.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTCAAGCACTGCCCTAAGCTTCAAAGCCTTTCCCTTCAGGTTCGGGAGGAAGATTGGATGCGTGGTCCAGAAAATTG GGCGGATCCAGATTTTGTTCCTGAATGCCTTTTGTTAAACCTGAAAACCTGCTCTTTTCGATATTTTGAAGACCTAGAAG TTGAGCTTCAGTTAGCAAGATATATTTTGAAGAATGCTAGAGTTTTACAAACCATGAAAATCTTGACCGGGCCTGCAATC AGCCGAAGACAAATCAAAATGATTAGAGAAAAGTCATCCTCAAGCAAGCTCAGTCCTTCAAGATGTCAAATTATAGCTCA TCCGATGTACAGCCATCAAAGAAGTTAG
Protein sequence (LotjaGi1g1v0450900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLKHCPKLQSLSLQVREEDWMRGPENWADPDFVPECLLLNLKTCSFRYFEDLEVELQLARYILKNARVLQTMKILTGPAI SRRQIKMIREKSSSSKLSPSRCQIIAHPMYSHQRS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 83 | 83 | 1.3E-18 | – | |
PANTHER | 1 | 83 | 83 | 1.3E-18 | – | |
Pfam | 30 | 74 | 45 | 1.1E-14 | ||
SMART | 35 | 107 | 73 | 4.1E-7 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0450900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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