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Field | Value |
---|---|
Gene ID | LotjaGi1g1v0451500 |
Transcript ID | LotjaGi1g1v0451500.1 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | LURP-one-like protein; TAIR: AT5G01750.2 LURP-one-like protein (DUF567); Swiss-Prot: sp|Q9LZX1|LOR15_ARATH Protein LURP-one-related 15; TrEMBL-Plants: tr|G7I889|G7I889_MEDTR Tubby C 2 protein; Found in the gene: LotjaGi1g1v0451500 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:95073411..95078634) extracted from Lotus japonicus Gifu genome v1.2.
CAAACTTAGAGTTGTGATGTTAAGCATCTTCAAAAGTTTGTTCCGTATCCGGAAAGAAACTTAACTCCATCATAGTTGAC CATTTCAGATTCTGTATATAACAAAGCTTCAGCACCCAAAAAGAACATCCTGATCCTACAACAACATAACAAAGAAACAC ATTTCAATAACTCATTTATTCTTCTGTTATTTTCTTAATTTGAGCTTAACAATCATGGCAAATCGACCGTCATCATCTGC CGCCGCCATCATAGGCCCCCAGTACTGTGCTCCTGGTATGAACCTCTATATGCTTGGTTGGAGATTTACTGCAAGTTTTA ATAACAGCTATTTTTTATATATCAGATTCTCTTTAGCTTTAAAACAAAAAAGAAATCGGGGCTAAAATTGGCCACCATTA TAGCCATAGTTTGTCCCATTTTCTGTTTCATTTTCCAATCTCACTAGTAAATTTTTGTCATATATTGGTGAGGTGATTAA TAATTTACATGAGTACCAAAGTTAAGTTTTAAGAATTTTTTTCGATGCCCTCCTAGTTACTGATGGCTCTCTTATAAATG ACCAATAAGTGATTACTTGATGAAATAAATGTTGTGTTGTGCCAGGACAGATAACAATGAGTTTTGAAAAGTAACGATTA ATATGATGATTGTAGAGTGTAGACTAGTTTAGTTTTGAATTACTACTAGGATAATAGCCAGTTTCCGTGCGATGCACGGA CGAACGATTCTACGATTAAACTTATTTATTTATGTAATTTATTAAGGTGAATAAATTAACTCACATACCAATAATTTGTT ACCTTTTCACATATATAACATCAACAAAAGTTATCATTAACTTCGGCAATACATAGGTGACAATAAACTGATTTTAACTT TAATATGTATAACAAAGGTGTATTCTGCATTTTTGAAGTTTTCCAATATAATTATAAAACAGTAACAATGTTACAATATT TGTTAGAAACAAACTTAAAAATGCTGGTTGTGTTTTAAACAGCAGTCATGCCGACAAAATACCTTGATAAAGAATTTATC AATCATCTTACATATTAATGTTACATTCTACCATGTCATACTTCAATACAATTAAGTATATAACACAAATATCACATCCA TTTATCAACGGGTTACAACAATTATAGAAAAAAGTAGTCACCAAATAAACTCATTCAATTCAAATCTAAAAACAACAAAC ATGGAGCAATCATATAATTCCTCTCCACATCAAACAATAATTATGGGATGTTAGTTACTCCACATTGATTTATCTGATCA AAGAAGCAAGAAAATTAGCTAAAGTCATTGAGTTTATTCATATTTAATGATTGAATTTGCTGTCTTGGCTTGAAAGGGAT TTATAAAAGATATCCTTTCTGCTAAACTGTGACTATTAGATTGACCTCTTCTGGCTCTGACATGAACCACTTCCTTTACT TTCTCCTCTTCTGTTACATAGCTTTTTGGCTCTCTTACCTCTTCCAGAACTCTGAAATCGTACAGAGCAAATAATAAGTA AATTTCTGGAATATGATATGATTATATCAAAAACTCAAAGTTAAGAATTTTTTTCGATGCCCTCCTAGTTACTGATGGCT CTCTTATAAATTACCAATAAGTGATTACTTGATGTAATGAATGTTGTGTTGTCCCAGGACAGGTAACAATGAGTTTTGAA AAGTAATGATTGTAGAGTGTAGACTAGTTTAGTTTTGAATTACTATTTCTGTTTTTGTTTCCCTATGATTTCTTCTTCTT AGTGCTTATCTCATCCTCACTTGTACAATATCCATCTTATGCTGAGCTAGGCTAATTCTATTTAATCAATTAATTCTCTG TTATATTTTGCGTATGCATCATTTATATCTTAGTTTGTTTGATCTGCTGACCGTTTATGAATTGCAATTACAGCTTCACA TCCCGTTGATCTGATAATCACAAAAGAGAGGACTCTGCGTGATAACTTCACTGTCACAGACATCAATGACAGCATTGTTT TCACAGTTAAGAGTCCTCTGGTGACCATCGTAACACCACGCGAACACCGGTTCTTACATGATGCTCATGGAAACCCAATT CTCCATCTTCGCAGAGCGGTTAGTTCATCCTCTACTCAAATTCCAAGCCTCCATTTTCTTCCTTTCTGCTACGAATTTTG TATTGTTTTTCCTCTGTTTTCCATCCCCTGGTTAGATCGTCTCATGTTCTAGATATATGAAATTACAAAATTGAAAGACT ATAACAGCTAATGAATCAACATTTATAAGAGTTAGTCTTGCAAATTTAGGAAATCTATAGGATGTTGGATTGGGAAATAT ATATTTATCATATTGGATTGTTACATAATCAGTTCCTAAAAGAAAAATATTTAATTTAGTTTTCAATGTTTTAAAATACT GATCAAGTTAGAGGAGACTAAATTGACGGACATTTTACAATATTGAAGACTAAATTGAGTATTTTTTTCTTTTAGGGACG AACTTGTCTACTGTCTGACTTTCATAACTAAATTTACTATTCAATCTACGTTTAATGTCAATTCACCTTAAACAATCCAA TAGTGTTGAAATTTAGTAGGTAAGCGTATATGTGGGGTTGTACTGATGCACCACTAAACTAAGGAGTTTCAATTTGTAAT TACTTATAAGTTATAACTTTATGATTAAAGATTTTAACTATATCTCATGCTTCTTCCTAATGTCATTTCTAGCCTGATTG GATTCATCTTCTTTTTTCTCAAAATCTATTTTGAAACTCAAAAATTACTTACAGAAACTAATTTTCTCTATAAGTAATTT TGACTTTAGAATCAAGTAAAGAACGATTTTCAAATGCAAACTTATTAATAGATTTATGAGTACCCTTTTTTATTGTGTCT TGGAGAAACCTACCTGAAATTTATCCTGAAAGTTTGTTTATGCAGCTACTAGCAGCAAGTGATTGTTGGGAAGCATTTAG CGGTAAAAGTACAGAACCCAAAGACTTGATCTTTACTAGGAAGCGATCTTCATTATTCCAGCTAAGGACTACATTAAATG TGTTCTTGGCAAATAATACCACAAAAGTTTGTGACTTCAAGGTCAAAGCAAATTTATCTGCACGATCATGGGTTGTTTAC ATTGGCGAGTCTGACACTGTTGCAGCCAAGGTTTGTTTTCTGACACAATTAATATATATATTTTACTTAGTTTTCTGCAA TGAAAGATGGTCTTTGAAAATATAAATTTATGGAGATAATTGTTATTGCAGATAAAGAAGAAGTTTGGCTCTGTATTTAG CAGAGAAAAGTTCATGGTCACTGTGTCTCCGAACATTGACTATGCATTCATTGTGGGACTAATTGTGACTCTTGATGATT AAACCACTACATGAACAAGGGAAATTCAAGGGAAGAGGAGTATGCGATTAGCGATAGTCTCTTGGACACTCTCATTCTAA CACTAACTCTTTTTTATTATTGGTTAAAATCTATATAGGTTTAACTAAATTGAGAGTTGACTCATATATTTTAGTTGACC CTACATGGATTTTAACTAATAAAAAATAAAGTGTTAGACAAAGAATATTGGTAGCATTTCTCTTCAATGGAAAATTATGT TTTAAGTTTATATTTTTTTATTTTTTCACTATGGATAATATGTGGGACTTATTTCTTGTATTTTTCTTGATTTCTTTTGT AATTTTTTTATGAATAATTTCAATTATAAGTACAAGATTTTAAAAATTTATCATATTCACATGAAACGATTGTGTTCCAT TATTTGTTGATACAACTATTTTTGGAAATAAAATAATTTATTCATTATTAATAAACTATGAGAACATTTTTCTTTCCGTT TGTAACCAAAAGAAAATTATGAGAACATTCCTCTTAAATAAGTTATGAAAAATACACATATACAGAAAATCAAATAAAGT GGCTAATATGTTAGTTAAGAGTGACTCTGACAGAGTTTTTCCGTCAACTACTTTTGGACATGGTCTCTCTACCTCTTTAA TTAACTAAGTTAGTTTTGGTGTGTTGTCCTCCATGTTTGGTGGTCACCGATGTTTTTAGTTGATGTTTTTTCGTATGATT TTTTTAAACTAAACAGTTCCTTAATAGAGAGTCTCTATAGATCCAACGCTAGGCCGCTAACTCTCGCTTCAGTTCATACT TCGTGAGAACCCATTTTCATTCGGCAATAATGGCTTTTTTGAAATTTATTCGTCGGTGCAGAATTCCTGAAGCTGATGAT CACTTTCCATTTTCATTACCACTACCTTCTGCCTCCGCCTCAGATAATGCATCTTCTCAGAAAGATGAGGTTATTCGTCT GTTAGAACATATTGGACTGCAGGGTCTGACCTGCATGCAACACATTGACAAAGAATTGGTTTTTGGGAGTCCCTGGATAA GAAATCTGAGCTTCGCAAGTTGTATTTCATGGTTTTTGAAAGGGGCCCTAGGGTTTTCAATAATGAAGGCCTCTAATATG TAATTGCTTCAGATTCGTTTGGGGCTGCAAATAATTTTATCAAGGGAAAAGTATCTTAGTTGACCACGTATCAAGAAGTA TTGGCTACATTTTTAGGACAAGTTTATATGGAAGCTGCTAGCAGAGCCGTGTACACCCTTAGGCAAATTAAGCAATTTCC TAAGGCCTCCAAAAATATTTAGGCCCCCTAAAAAACTTTAGTACAAATAGAATATGTAACGCCCCGATTTCTCGAGGGTC ATTTTAGTAACTTTTTCCAAAAAATGTGTGTAAATTTTTGTCGAAATAAAACCTTTTAATGACAGTAAATAAAAGATAGA ATAAATGCTGAATAAACTTCATTTTATTTAATAGACCAAGGCTTTTTATTACATCAATACTCAATAAAGGAAACTAATGC TTTCAACCTTACTTGAGCTTATCCACATACACGATGGCTTTAAGTAGGTATCGAGCCCTAAAACAACACTCGACCTCACC CCCAGTACAGACTCAATTATCCCACTCAAAACCCGACTCATAGGCCGCGTGCCCTCCAAGGCCTCCAACGCTCGCATCAT ATCGTCTCGCATCCTCTGCTCTCGCCAGCCCCATAGCTGAACCATCGGTCGCGCGGTGGATGTCTCGAGCCTTGCCGTCG TCCACATCAAGCAGGTGCATGGCCGCATCTCGACTGATCACACACATGCTTGTTGTCTAGCCGTTAAGCGCCCCAAACAA CAAACAACAAACAAGCAAGGGTCA
CDS sequence (LotjaGi1g1v0451500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAAATCGACCGTCATCATCTGCCGCCGCCATCATAGGCCCCCAGTACTGTGCTCCTGCTTCACATCCCGTTGATCT GATAATCACAAAAGAGAGGACTCTGCGTGATAACTTCACTGTCACAGACATCAATGACAGCATTGTTTTCACAGTTAAGA GTCCTCTGGTGACCATCGTAACACCACGCGAACACCGGTTCTTACATGATGCTCATGGAAACCCAATTCTCCATCTTCGC AGAGCGCTACTAGCAGCAAGTGATTGTTGGGAAGCATTTAGCGGTAAAAGTACAGAACCCAAAGACTTGATCTTTACTAG GAAGCGATCTTCATTATTCCAGCTAAGGACTACATTAAATGTGTTCTTGGCAAATAATACCACAAAAGTTTGTGACTTCA AGGTCAAAGCAAATTTATCTGCACGATCATGGGTTGTTTACATTGGCGAGTCTGACACTGTTGCAGCCAAGATAAAGAAG AAGTTTGGCTCTGTATTTAGCAGAGAAAAGTTCATGGTCACTGTGTCTCCGAACATTGACTATGCATTCATTGTGGGACT AATTGTGACTCTTGATGATTAA
Protein sequence (LotjaGi1g1v0451500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MANRPSSSAAAIIGPQYCAPASHPVDLIITKERTLRDNFTVTDINDSIVFTVKSPLVTIVTPREHRFLHDAHGNPILHLR RALLAASDCWEAFSGKSTEPKDLIFTRKRSSLFQLRTTLNVFLANNTTKVCDFKVKANLSARSWVVYIGESDTVAAKIKK KFGSVFSREKFMVTVSPNIDYAFIVGLIVTLDD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 9 | 193 | 185 | 2.3E-57 | – | |
PANTHER | 9 | 193 | 185 | 2.3E-57 | ||
Gene3D | 9 | 193 | 185 | 1.8E-58 | ||
SUPERFAMILY | 11 | 192 | 182 | 2.17E-38 | ||
Pfam | 14 | 189 | 176 | 1.9E-33 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0451500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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