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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0451500 |
| Transcript ID | LotjaGi1g1v0451500.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | LURP-one-like protein; TAIR: AT5G01750.2 LURP-one-like protein (DUF567); Swiss-Prot: sp|Q9LZX1|LOR15_ARATH Protein LURP-one-related 15; TrEMBL-Plants: tr|G7I889|G7I889_MEDTR Tubby C 2 protein; Found in the gene: LotjaGi1g1v0451500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:95074875..95077044) extracted from Lotus japonicus Gifu genome v1.2.
TTTGGCTCTCTTACCTCTTCCAGAACTCTGAAATCGTACAGAGCAAATAATAAGTAAATTTCTGGAATATGATATGATTA TATCAAAAACTCAAAGTTAAGAATTTTTTTCGATGCCCTCCTAGTTACTGATGGCTCTCTTATAAATTACCAATAAGTGA TTACTTGATGTAATGAATGTTGTGTTGTCCCAGGACAGGTAACAATGAGTTTTGAAAAGTAATGATTGTAGAGTGTAGAC TAGTTTAGTTTTGAATTACTATTTCTGTTTTTGTTTCCCTATGATTTCTTCTTCTTAGTGCTTATCTCATCCTCACTTGT ACAATATCCATCTTATGCTGAGCTAGGCTAATTCTATTTAATCAATTAATTCTCTGTTATATTTTGCGTATGCATCATTT ATATCTTAGTTTGTTTGATCTGCTGACCGTTTATGAATTGCAATTACAGCTTCACATCCCGTTGATCTGATAATCACAAA AGAGAGGACTCTGCGTGATAACTTCACTGTCACAGACATCAATGACAGCATTGTTTTCACAGTTAAGAGTCCTCTGGTGA CCATCGTAACACCACGCGAACACCGGTTCTTACATGATGCTCATGGAAACCCAATTCTCCATCTTCGCAGAGCGGTTAGT TCATCCTCTACTCAAATTCCAAGCCTCCATTTTCTTCCTTTCTGCTACGAATTTTGTATTGTTTTTCCTCTGTTTTCCAT CCCCTGGTTAGATCGTCTCATGTTCTAGATATATGAAATTACAAAATTGAAAGACTATAACAGCTAATGAATCAACATTT ATAAGAGTTAGTCTTGCAAATTTAGGAAATCTATAGGATGTTGGATTGGGAAATATATATTTATCATATTGGATTGTTAC ATAATCAGTTCCTAAAAGAAAAATATTTAATTTAGTTTTCAATGTTTTAAAATACTGATCAAGTTAGAGGAGACTAAATT GACGGACATTTTACAATATTGAAGACTAAATTGAGTATTTTTTTCTTTTAGGGACGAACTTGTCTACTGTCTGACTTTCA TAACTAAATTTACTATTCAATCTACGTTTAATGTCAATTCACCTTAAACAATCCAATAGTGTTGAAATTTAGTAGGTAAG CGTATATGTGGGGTTGTACTGATGCACCACTAAACTAAGGAGTTTCAATTTGTAATTACTTATAAGTTATAACTTTATGA TTAAAGATTTTAACTATATCTCATGCTTCTTCCTAATGTCATTTCTAGCCTGATTGGATTCATCTTCTTTTTTCTCAAAA TCTATTTTGAAACTCAAAAATTACTTACAGAAACTAATTTTCTCTATAAGTAATTTTGACTTTAGAATCAAGTAAAGAAC GATTTTCAAATGCAAACTTATTAATAGATTTATGAGTACCCTTTTTTATTGTGTCTTGGAGAAACCTACCTGAAATTTAT CCTGAAAGTTTGTTTATGCAGCTACTAGCAGCAAGTGATTGTTGGGAAGCATTTAGCGGTAAAAGTACAGAACCCAAAGA CTTGATCTTTACTAGGAAGCGATCTTCATTATTCCAGCTAAGGACTACATTAAATGTGTTCTTGGCAAATAATACCACAA AAGTTTGTGACTTCAAGGTCAAAGCAAATTTATCTGCACGATCATGGGTTGTTTACATTGGCGAGTCTGACACTGTTGCA GCCAAGGTTTGTTTTCTGACACAATTAATATATATATTTTACTTAGTTTTCTGCAATGAAAGATGGTCTTTGAAAATATA AATTTATGGAGATAATTGTTATTGCAGATAAAGAAGAAGTTTGGCTCTGTATTTAGCAGAGAAAAGTTCATGGTCACTGT GTCTCCGAACATTGACTATGCATTCATTGTGGGACTAATTGTGACTCTTGATGATTAAACCACTACATGAACAAGGGAAA TTCAAGGGAAGAGGAGTATGCGATTAGCGATAGTCTCTTGGACACTCTCATTCTAACACTAACTCTTTTTTATTATTGGT TAAAATCTATATAGGTTTAACTAAATTGAGAGTTGACTCATATATTTTAGTTGACCCTACATGGATTTTAACTAATAAAA AATAAAGTGTTAGACAAAGAATATTGGTAGCATTTCTCTTCAATGGAAAATTATGTTTTAAGTTTATATTTTTTTATTTT TTCACTATGG
CDS sequence (LotjaGi1g1v0451500.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTGTGTTGTCCCAGGACAGCTTCACATCCCGTTGATCTGATAATCACAAAAGAGAGGACTCTGCGTGATAACTTCAC TGTCACAGACATCAATGACAGCATTGTTTTCACAGTTAAGAGTCCTCTGGTGACCATCGTAACACCACGCGAACACCGGT TCTTACATGATGCTCATGGAAACCCAATTCTCCATCTTCGCAGAGCGCTACTAGCAGCAAGTGATTGTTGGGAAGCATTT AGCGGTAAAAGTACAGAACCCAAAGACTTGATCTTTACTAGGAAGCGATCTTCATTATTCCAGCTAAGGACTACATTAAA TGTGTTCTTGGCAAATAATACCACAAAAGTTTGTGACTTCAAGGTCAAAGCAAATTTATCTGCACGATCATGGGTTGTTT ACATTGGCGAGTCTGACACTGTTGCAGCCAAGATAAAGAAGAAGTTTGGCTCTGTATTTAGCAGAGAAAAGTTCATGGTC ACTGTGTCTCCGAACATTGACTATGCATTCATTGTGGGACTAATTGTGACTCTTGATGATTAA
Protein sequence (LotjaGi1g1v0451500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLCCPRTASHPVDLIITKERTLRDNFTVTDINDSIVFTVKSPLVTIVTPREHRFLHDAHGNPILHLRRALLAASDCWEAF SGKSTEPKDLIFTRKRSSLFQLRTTLNVFLANNTTKVCDFKVKANLSARSWVVYIGESDTVAAKIKKKFGSVFSREKFMV TVSPNIDYAFIVGLIVTLDD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 6 | 180 | 175 | 1.4E-55 | ||
| PANTHER | 8 | 180 | 173 | 9.1E-56 | – | |
| PANTHER | 8 | 180 | 173 | 9.1E-56 | ||
| SUPERFAMILY | 8 | 179 | 172 | 1.36E-37 | ||
| Pfam | 10 | 176 | 167 | 5.4E-33 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0451500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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