Transcript — View — Lotus Base

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LotjaGi1g1v0451800.1

Overview

Field	Value
Gene ID	LotjaGi1g1v0451800
Transcript ID	LotjaGi1g1v0451800.1
Lotus japonicus genome version	Gifu v1.2
Description	LURP-one-like protein; TAIR: AT5G01750.2 LURP-one-like protein (DUF567); Swiss-Prot: sp\|Q9LZX1\|LOR15_ARATH Protein LURP-one-related 15; TrEMBL-Plants: tr\|I3T1L0\|I3T1L0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0451800
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr1:95149128..95152755) extracted from Lotus japonicus Gifu genome v1.2.

AACAGATTCCAGACCGCAGAACCTTATGCTAAACACTCTCTGATTCACCAAAATACCTCCACGTTCCTGGAAATTCCTGT CTTGTTAATTTTATTTTATTGTTTTGGTCAACGCGTTCATGTGTATTGTGTGAGCTACCTTCCAACGCGTACAAACAAAG CAAAACCGGCATCATAGTTCCACAATTTACCTATATAAACAACATAAGACTACTGTTTCACTCACATATCTCCATCTCAC AATCCCAAATCCAAAACCAAACTCTGATCATCATCAAGAAAAAAATCGAAGATCATCAACATCATTAATGGCTTATCCTT ACCCATATCAACAGCAACCACAGCCCTCCGCCTCCGCCCCTATGCCGGCGGTTCCCACCACCGTGTTTGGCCCACAGTAC TGTGCTCCGTACCCGGTGGATCTGGCTATCGTTAAGAAGGTCATGACCATTTCCGACGGAAACTTTGTTGTCACTGACAT CAACGGCAACATCGTCTTCAAAGTTAAGGGCTCTCTCTTAACGCTCCGTGATCGCCGTGTCTTGATCGACGCCGCCGGCA ACCCCATCGCCACTCTACGCCGCAAGGTTCCACTTTTTTTTAATCTTTCTCTTGTATTTTTTATTTTGAAACTTGTTATA TTTTCTTATTTTCATTTAAAAAGCTAAAAAAACACACAGATCATGTAAATAAATATATTATTAGCAAACTTTTCTTCTAG GTTATTGAGATTATAACGGCTTTTACTTTTCAAGCACGGCAAATTGTGCCAGAAAAGTGCAATTAATATTTTAGAATATA CCTTCAAAATTGCTATTTTTTTTTAAATCCAAAAAATAAATTGTACCATTCGGGGATGATCATTGGACCTCCCCCACCCG ACCTATATGTCTCTTTGCTTTTATCACTTGAAATATCATTCGATAACTCAAAATTGTTACTAATTGGTTACTTGTACTTC TTTTTTAAAATGAAAAAAATAATAATTATGCATGTTTATCATCAAGTTAATTATCTATCTGTGTCATTTTCTTAGGGGAA TTGGGGGGGTGGGGGGGAAACCAGTGATAAATTTCTTGAGGTATAATTTTTTTTTTATAAAAAATTATACGAGTCTTTTT AATTAAGTATTTGATTTTTTACCTTATAAAATCCTCATAAATTATAGGAGCTCATTCATTGAGAGGGTTCGTAAAGAGAA TTGATGTATTTTATTTTCATTTTTTAAAAAAGAACTTGTGCTAAAATCAATTGTCTATTTTTTTTTTGTTTAATGAAATG CAATTCATTAAAAGACAGGCCAAGGTACAAAGAGAGTCTTAACACTAATGAAGTCGTCTAAAAGAATCAATAACTATTAG CCTTTCCTCTAGTTCTAAATAAAAATATATATCTTTTTTCATTAATCTTCATAAATGATCATTTTAAAGTTACAAGCAAG TTGTGTTGTTGATACAGATAATGACTGCACATGATCGCTGGCAAGCTTATAGGGGTGAGAGCACAGAGGCCAAAGATCTC ATCTTTACTTTGAAGAGATCGTCACTGATCCAGTTTAAGACCAAATTAGATGTGTTTTTAGCCACTAACACCAAAGAAGA CGTTTGTGATTTCAAGGTTAAAGGGAGTTGGTTTGAACGATCTTGCGTTGTTTATGCTGGAGAATCTAACACCATTGTTG CCCAGGTAAAACTCCACACAAAAATTGAATCAATTATAATTAACTACTTTTTGATGAATATTAATTGTTTGACTTAATTG CATATTTGGTCCCTTAGTTCATACTAATGTGCAAATATGGTTCTTAAACTTTAAAAGTTCCAGTTTTAGTTTCCACATTT AATGTTGTTTGCAGTTTTCGTCCTGTGTCATTTTGTGAAAAAAGAGCAATCAGCAATGGTATATGAATATATGGTTCTTG TCATACATCCAACTAACGTACACTATTGAGGTAGTTTTGAATTGTATATCGAAAGGATGTTCGTGGAAAACACATGTTTG AGCATCATTTTCGGTCAAAAAATCAAATGTGTAGGGATGAAAATTGTAAACAACAATAAATGTGGGATCAAAATAAAAAA AAATCCGGTACCGTTTGCATATTCACGTAGAGTGTGGAATTAAATACTCTCTCCGTTCCTTATTAACTGTCTACTTTGAA GAAAAAAATTTGTTCCTATATATCTGTCCACTTAGAGTTTCAAGAAAGCATTAAATAATGTTTTTTCAAGAAATATCCTT GCATTAACAATAAATGAGGAAATATAATATACATTTTAAAGGGTGAAATAGGAAATCAAATAATACTTTTATGAAAAGTA ACAAAATTAATTGCACTTCTTAATATGTGTGTTTCTTCTCTTCCTTAACAGTTAAATAAGAACGGAGGGAGTATGTAATT AAGCCTAATTGTTTACATAAAATGAAATATTTCTTGTTAATTTTATTGCAGATGCATAAGAAGCACACTGTTCAGAGTAT TTTGATTGGGAAAGACAATTTCACGGTCACGGTATATCCCAACATTGATTATGCGTTCATAGTGGCGCTTATTGTGATTC TGGATGAGATTAACGAGGATGAGAAGGCTGAATAAAACAATGTAATATGTAATGTTAGCGCAACCTGTTGTACTCTTTTG TCAATAGTACTGCATTAGGGAGAATTACACTCTTCTCACATAGGTTTGTCATTATTACATGGATATTTTTGCAAATTCTT TTCTTTATATATTATTTAAAATAACATGGGTATTGCTTGTTATAATAATAAATCTTGAAGGGAGTTGGTGTAATAATGAT AAATCTCAATGCAGGTTTGTGCAATATCCCTAAGTTAGGGTCATTAAAGGCTTGTTAAATAATGTCGGGGATCTCAGTGC AACGGTGTTAAATATCAAGGAAAATGTTTTTGCAATTTACCCTAATTTATATGTATGAATTTTTTTTTTTGAAATTATGA ATATTTTTCTTGGAATTTGTTTAATTGTGTTTCATTTCTGGTATTTTTTAAATAGATAAATAAAAACAATGTATATTAAA ATCACACTGCATGCTAGAACTTATTATGCAACACCGGCTAGTTGTTGTTCATGTCTGATTTTTCTTAAGCAATTTTTTGT TTGTTTAAGTTTGATCAGTGAAAAAAATCCCAATAGGAAGAGTTATGACACGCCTCGTGAGATGTAGAAAAGAAAGTACA TTTCTCACCTTATCGGATATAGATTTAGAAGTAAATTCATTTTTTTTATTGATTGTTAAAATAAGAAATTCAATAAGATT GATTCGAATGATTTTTCTCTTCAAACCCATATTGAGTTGGAATAATGTTTTTTTCACACCCCGTTTTGGCTGTAAAGAGG TGGAAGGATGAGAGAAATAGGAAAGAAAAGAAAAAATATGAGATGTGATAGAAGATGATAAGAGAAGAGAAATATAAGAA AAAAAAATGAGTGAAAATGTAGTGTATAAAAAATGAGGCGTGAACATATCATTGTTGTAGTAAGTTGTGAAGCTAATGAG CTATAGCCACAGTCTATGACTCTATGGGCCACTTGCCCCATTCATTGCTTGGGATGTCTACAACAACATATTTGAGTCAA ATAACTTCAAACCTTTCAATGTGCTACA

Download Genomic Sequence

CDS sequence (LotjaGi1g1v0451800.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCTTATCCTTACCCATATCAACAGCAACCACAGCCCTCCGCCTCCGCCCCTATGCCGGCGGTTCCCACCACCGTGTT TGGCCCACAGTACTGTGCTCCGTACCCGGTGGATCTGGCTATCGTTAAGAAGGTCATGACCATTTCCGACGGAAACTTTG TTGTCACTGACATCAACGGCAACATCGTCTTCAAAGTTAAGGGCTCTCTCTTAACGCTCCGTGATCGCCGTGTCTTGATC GACGCCGCCGGCAACCCCATCGCCACTCTACGCCGCAAGATAATGACTGCACATGATCGCTGGCAAGCTTATAGGGGTGA GAGCACAGAGGCCAAAGATCTCATCTTTACTTTGAAGAGATCGTCACTGATCCAGTTTAAGACCAAATTAGATGTGTTTT TAGCCACTAACACCAAAGAAGACGTTTGTGATTTCAAGGTTAAAGGGAGTTGGTTTGAACGATCTTGCGTTGTTTATGCT GGAGAATCTAACACCATTGTTGCCCAGATGCATAAGAAGCACACTGTTCAGAGTATTTTGATTGGGAAAGACAATTTCAC GGTCACGGTATATCCCAACATTGATTATGCGTTCATAGTGGCGCTTATTGTGATTCTGGATGAGATTAACGAGGATGAGA AGGCTGAATAA

Download CDS Sequence

Protein sequence (LotjaGi1g1v0451800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MAYPYPYQQQPQPSASAPMPAVPTTVFGPQYCAPYPVDLAIVKKVMTISDGNFVVTDINGNIVFKVKGSLLTLRDRRVLI DAAGNPIATLRRKIMTAHDRWQAYRGESTEAKDLIFTLKRSSLIQFKTKLDVFLATNTKEDVCDFKVKGSWFERSCVVYA GESNTIVAQMHKKHTVQSILIGKDNFTVTVYPNIDYAFIVALIVILDEINEDEKAE

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR31087:SF91 View details on PTHR31087:SF91 Search for proteins/transripts with this domain View external data on PTHR31087:SF91	9	215	207	3.3E-98	–
PANTHER	PTHR31087 View details on PTHR31087 Search for proteins/transripts with this domain View external data on PTHR31087	9	215	207	3.3E-98	IPR007612 Show description in modal box View details on IPR007612 Search for proteins/transripts with this domain View on EBI InterPro Service
Gene3D	G3DSA:3.20.90.20 View details on G3DSA:3.20.90.20 Search for proteins/transripts with this domain View external data on G3DSA:3.20.90.20	24	216	193	1.2E-85	IPR038595 Show description in modal box View details on IPR038595 Search for proteins/transripts with this domain View on EBI InterPro Service
SUPERFAMILY	SSF54518 View details on SSF54518 Search for proteins/transripts with this domain View external data on SSF54518	25	210	186	1.41E-63	IPR025659 Show description in modal box View details on IPR025659 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF04525 View details on PF04525 Search for proteins/transripts with this domain View external data on PF04525	26	205	180	7.7E-63	IPR007612 Show description in modal box View details on IPR007612 Search for proteins/transripts with this domain View on EBI InterPro Service

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

Unable to find any GO terms for the transcript with the identifier.

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0451800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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