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LotjaGi1g1v0452600.1

Overview

Field	Value
Gene ID	LotjaGi1g1v0452600
Transcript ID	LotjaGi1g1v0452600.1
Lotus japonicus genome version	Gifu v1.2
Description	BHLH transcription factor; TAIR: AT2G40435.1 transcription factor SCREAM-like protein; Swiss-Prot: sp\|Q9LPW3\|SCRM2_ARATH Transcription factor SCREAM2; TrEMBL-Plants: tr\|C6T4E8\|C6T4E8_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi1g1v0452600
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr1:95288486..95289948) extracted from Lotus japonicus Gifu genome v1.2.

CGAAGATGGCTAAAAGAAAGGGCACCGCCAGAGCCAAAAAGGGAGAGAAAACCAATATAAAATAGACAAGTTGATTATAA GAAGGAGCAGAAGAATGGGTTCAAGGGAGCGAAGAAGAGTGGCTTTGCAACACACGTTGCAACAACTGCGAGATGCCACA AATTCCAGTGCTGTATGTTTAAAAAGATTAAGCTTCTACTTCTGCTTCTTAAATAAAACTATTCAACCTTTTTAATTTAG TTAATATTTTTTTTTTGTTATTTTATGTTTGGCAGGTAAACAAAGCATCCATTATTGCGGACGCCTCCAAATACATAGAG GAGTTGAAGCAAAAAGTGGAGGATCTGAACTCAGAGCTTGGAGTTACTGAATCATCAACCACACAAATCGATGAACTACC TATGGTGCATGTTGTTGCTGTATTATATTAATTATCCTAATCTTATGTGACTGAGATGTTCTCAGAAATTATCGGATGGA TAATCTGATTCTTTGCTTTCGAAAATAAAATATTGTTGTCACATCTAATAAAAACAATTTTTTTTCAGGTAAGTGTAAAA ACCCTAGAAAAGGGTTTCCTCATTCAAGTGCTTTTAGAAAAGAGTTGTCCTGGCATGCTAGTCTCAATACTTGAAGCCTT CGAAGAACTCCAACTTGATGTGATTGATGCTAGGGCTTCTTGTGAAGACACTTTCCAACTAGAAACTGTGGCAAGAGAAG TAAGTGAATAAATATTATTTCTACATATACTGTTAATATCGGGTAAAACTAAGTTAAGATGTTCAATAATAATATACCAT GTGTCTTAGGAAATTCTAACTCAGAAGTCAAAATATTATTGTTTTGCTGTGATTTAATTTATTCAATATATATTTAGCTC GGGTGATTTAGACAAATATATAATATTTTTCTCTAATTACTCTTCTGACAATTAAAACTTTGACAAATTAAAACGATTGT TCATTAATTCTGCAGAGTCACAAGAAGCACAGTGTTAACGCGCATGTGGTGAAGGAAGCAGTGTTGCAAGCAATCAGGAA CACGGACTAATCAAAGAAAGCCCACGGATCGATGACTCAATCCAAATATCCAGTACCGTTGTTTTGTCTTGTTTATTAAG CCTAAAATTTGCACATTCATGTGAATGTGAGACAATTTGTGATTGCATATTTTGCCAAAATCTGAGGTACCTAGCTAGCT CTTCAATGGCCCTTACATAATTGAATTGAAATGGCTTATTATCATGAACGTCTTCTTGGGTAGATGAGAAGAGAATGAAT TGCATTATTTTGGCATTCAGTACGTGGCCGGGGATTGATGACACTCAGATTAGGATAGTGAGAAATTGATGATGTAATAA GCAATCATGCAAACACAGATTGAGCCCAATAATTAATGAACCACTTTTATGTATCATGTTACTCCAATTAGTAACCAACT TCCATTGATTAGAGAAGACGTAG

Download Genomic Sequence

CDS sequence (LotjaGi1g1v0452600.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGGTTCAAGGGAGCGAAGAAGAGTGGCTTTGCAACACACGTTGCAACAACTGCGAGATGCCACAAATTCCAGTGCTGT AAACAAAGCATCCATTATTGCGGACGCCTCCAAATACATAGAGGAGTTGAAGCAAAAAGTGGAGGATCTGAACTCAGAGC TTGGAGTTACTGAATCATCAACCACACAAATCGATGAACTACCTATGGTAAGTGTAAAAACCCTAGAAAAGGGTTTCCTC ATTCAAGTGCTTTTAGAAAAGAGTTGTCCTGGCATGCTAGTCTCAATACTTGAAGCCTTCGAAGAACTCCAACTTGATGT GATTGATGCTAGGGCTTCTTGTGAAGACACTTTCCAACTAGAAACTGTGGCAAGAGAAAGTCACAAGAAGCACAGTGTTA ACGCGCATGTGGTGAAGGAAGCAGTGTTGCAAGCAATCAGGAACACGGACTAA

Download CDS Sequence

Protein sequence (LotjaGi1g1v0452600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MGSRERRRVALQHTLQQLRDATNSSAVNKASIIADASKYIEELKQKVEDLNSELGVTESSTTQIDELPMVSVKTLEKGFL IQVLLEKSCPGMLVSILEAFEELQLDVIDARASCEDTFQLETVARESHKKHSVNAHVVKEAVLQAIRNTD

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR31945 View details on PTHR31945 Search for proteins/transripts with this domain View external data on PTHR31945	1	149	149	7.2E-68	–
PANTHER	PTHR31945:SF45 View details on PTHR31945:SF45 Search for proteins/transripts with this domain View external data on PTHR31945:SF45	1	149	149	7.2E-68	–
Gene3D	G3DSA:4.10.280.10 View details on G3DSA:4.10.280.10 Search for proteins/transripts with this domain View external data on G3DSA:4.10.280.10	4	67	64	3.3E-6	IPR036638 Show description in modal box View details on IPR036638 Search for proteins/transripts with this domain View on EBI InterPro Service
SUPERFAMILY	SSF47459 View details on SSF47459 Search for proteins/transripts with this domain View external data on SSF47459	5	58	54	9.29E-6	IPR036638 Show description in modal box View details on IPR036638 Search for proteins/transripts with this domain View on EBI InterPro Service
Coils	Coil View details on Coil Search for proteins/transripts with this domain	33	60	28	-	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0046983 View details of GO:0046983 AmiGO InterPro QuickGO	Molecular function	Protein dimerization activity	The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits.	Subterm of View details of GO:0005515

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0452600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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