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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0463200 |
| Transcript ID | LotjaGi1g1v0463200.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box protein; TAIR: AT3G56470.1 F-box family protein; Swiss-Prot: sp|Q9LXZ3|FB204_ARATH F-box protein At3g56470; TrEMBL-Plants: tr|G7KT89|G7KT89_MEDTR F-box protein; Found in the gene: LotjaGi1g1v0463200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:96814526..96816079) extracted from Lotus japonicus Gifu genome v1.2.
TTTCTTTATCTCCTTATTTTAGATGATATTATCACATGAATGAACAAAATTATATGTATTCCTTTTTTACTGTTGGAAAT CACATATCTTCTCATTTTTGTGATACACAGGAAACAAAGTGAAGAAGGTAGAACGGAACAATGACCTTCCAGAGGTAGAA AAGAACAATGACCTTCCTTCGGATGTGCTTGGGATTATTTTTAGAGAACTAGATTTCGATGACCTCTTCGAATTTGCTGG AGTATGCAAGAGCTGGAGAATTGGTCATAAACATTATTTGTCCGATTTCATGAAATCTCAATCACCTTTCATTGTTGAAA CAGCATTACTGGCTAATGAAGTATGTTCTTTCCTTAGTGTACCTGATCTGAAGATCTATCGCTCGACGATGCAGTACTTA TCAAGATTACACTATGTTGGGTCTTCTAGTGGCTATTTGATCATGGCAGGTTTTGACAAACAGAATGAATATCTTTTGCT GAAGAATCCGTTTACAAGAAGAATGAAAAAAATCAGTACCTCTGCCCTTGAAGGTAAGGTGAAATTATGGGTTTGTCGTG CATTACTTGCTTTTGTCAAAGGTTCTGAGGAGTTTGTCATAGTAGTTTCAGCACTCAAACATTCTTCTTATGGTTTACAT GTTTATCAGTCTCGAAATTCCTCTTGGATTTCATATTCAATAAGGGATCGTGTTGTGGCCTTAGTGGTATTGCACAATAC TATATATGCTCTTACTTCCCAGAAAAAGATAGGGGTGCTTAGTCTGAATTCTGCAAGAGTAAAATTTCTAAATTTGAAGA ATACTCCCGAATACCCTATCCGTAGTTTGTTTACTTCTGATGGGCAACTTTTAGTGCTTAATTTTGAGCCCGGGAGAAAA TTGAATGTGTACAAGATAGACTTCTCAACCATGGAATATGTTAAGCTCGAAACATTGGGTGACCTAGCAATATTTTATTC ATTGTACAATTGTCATGCATTGAGCAACCCAGGTAGATGGGGATATGATAGCAACTCTGTGTATTACATTACTACCGCTC ATGGCAGACTTAATCCAGGATGTGAAGTGTATTCATGGAATAATGAACTGAAAAAACGAATCACTCGTGATGAGTTTGGA GCTCGTCCTCAAGGGATTTCATCACTGCTCTGGCGCGATTGGTGTTTCCGACATGAACATGATGAGGTAGATTATTCTCT TGTTGATTAACCTGCTTGGTGTTTCCGACATGAACATGATGAGGTAGATTATTCTCTTGTTGATTAACCTGCTTATTGGA TGGACTCCATGCTGCTCGTGAGTTTTTTGTTTGGACATTTATCGATCCGTATTTTGCTAGTTTCTTTTGGCTCAATTGGG AAACACTTGTCGTGTTCTCTTTCAATTACTTATTTACTTATTTGACTCAATTGGAAACACTTGCCATGTTGTCTTTCAAT TTCTTTGCTTAGTTTGTTATTTGACATCCAATTAGAATTCATCAATTTGTTATGTGATGATTAAATTTGAATTTTAAATA ATTTAAAATAGAAAATGAAGAGATGACATTGGAT
CDS sequence (LotjaGi1g1v0463200.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAATCTCAATCACCTTTCATTGTTGAAACAGCATTACTGGCTAATGAAGTATGTTCTTTCCTTAGTGTACCTGATCT GAAGATCTATCGCTCGACGATGCAGTACTTATCAAGATTACACTATGTTGGGTCTTCTAGTGGCTATTTGATCATGGCAG GTTTTGACAAACAGAATGAATATCTTTTGCTGAAGAATCCGTTTACAAGAAGAATGAAAAAAATCAGTACCTCTGCCCTT GAAGGTAAGGTGAAATTATGGGTTTGTCGTGCATTACTTGCTTTTGTCAAAGGTTCTGAGGAGTTTGTCATAGTAGTTTC AGCACTCAAACATTCTTCTTATGGTTTACATGTTTATCAGTCTCGAAATTCCTCTTGGATTTCATATTCAATAAGGGATC GTGTTGTGGCCTTAGTGGTATTGCACAATACTATATATGCTCTTACTTCCCAGAAAAAGATAGGGGTGCTTAGTCTGAAT TCTGCAAGAGTAAAATTTCTAAATTTGAAGAATACTCCCGAATACCCTATCCGTAGTTTGTTTACTTCTGATGGGCAACT TTTAGTGCTTAATTTTGAGCCCGGGAGAAAATTGAATGTGTACAAGATAGACTTCTCAACCATGGAATATGTTAAGCTCG AAACATTGGGTGACCTAGCAATATTTTATTCATTGTACAATTGTCATGCATTGAGCAACCCAGGTAGATGGGGATATGAT AGCAACTCTGTGTATTACATTACTACCGCTCATGGCAGACTTAATCCAGGATGTGAAGTGTATTCATGGAATAATGAACT GAAAAAACGAATCACTCGTGATGAGTTTGGAGCTCGTCCTCAAGGGATTTCATCACTGCTCTGGCGCGATTGGTGTTTCC GACATGAACATGATGAGGTAGATTATTCTCTTGTTGATTAA
Protein sequence (LotjaGi1g1v0463200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKSQSPFIVETALLANEVCSFLSVPDLKIYRSTMQYLSRLHYVGSSSGYLIMAGFDKQNEYLLLKNPFTRRMKKISTSAL EGKVKLWVCRALLAFVKGSEEFVIVVSALKHSSYGLHVYQSRNSSWISYSIRDRVVALVVLHNTIYALTSQKKIGVLSLN SARVKFLNLKNTPEYPIRSLFTSDGQLLVLNFEPGRKLNVYKIDFSTMEYVKLETLGDLAIFYSLYNCHALSNPGRWGYD SNSVYYITTAHGRLNPGCEVYSWNNELKKRITRDEFGARPQGISSLLWRDWCFRHEHDEVDYSLVD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 2 | 304 | 303 | 1.3E-72 | – | |
| PANTHER | 2 | 304 | 303 | 1.3E-72 | – | |
| SUPERFAMILY | 117 | 265 | 149 | 5.49E-7 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0463200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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