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Field | Value |
---|---|
Gene ID | LotjaGi1g1v0465400 |
Transcript ID | LotjaGi1g1v0465400.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | Phosphopantothenoylcysteine decarboxylase; TAIR: AT1G48605.1 Flavoprotein; Swiss-Prot: sp|P94063|HAL3B_ARATH Probable phosphopantothenoylcysteine decarboxylase; TrEMBL-Plants: tr|C6TA59|C6TA59_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi1g1v0465400 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:97346388..97350004) extracted from Lotus japonicus Gifu genome v1.2.
CTTGAAGGTCCAAGACAAACCAACCTTCCACAACACGAGAACGCATATTTGAAAGCCGCGATTCGTAGGTTCTTCTGAGA AAATTCAAAAATACTGAGAGCTTCTTCACCTTGGCGTGTCTCTGTTCTGTTGATTCTGAGTGCTGCAAGAAACACAAACA AGATAGACAGAGTTACGTTTGATCAATCATCAGAGAGATAGATGCCACAAGGTGATGGAAAAAATGCTTTCTCATTTTCA TTCTGTTGTTTTTTTATTTTTCTTTCTTTTATTTGTTTTTGCATCTCATTGGTTGATGAATTCTGGAGCACCCCATTAAC GTTTAAGCTTCAAAAATCGATTCTTTTACGGGATTTTTCAATCTTTATGCGATTGTCAATGATGGGTCTGGTGCATAAGA GAGTAAATTTGTTTGGTTCAAGATTCAGTGCTCTTCCTTCTTGTGATCATGAGGAAAATCCATTTCATTTCAATGTATAG CCAAACTTGCATTGGTTTGTATTGTTGCACTCAATTCAACAGTGTTATTTGTGTTATTTCTGTTATCTTCAGCTACCAAT TCTCTTGATGGTCACTGTTATTATCATAAACAATTCTCTCAGTGATTGTGTGTTTTTTTTCTTTCTTCTTTTCTTTGAAA TTTTTGAATGAGGGAAGGAGGGAGCGATTCTTGATCAGTACTAAAAACCATGAAACTTCTGATCTGAGACTTTTTTTTTT CTTATTGAGTCCTGTCTCCTGTGTGCTAAAGATTGTAACTCTGTTGATGCTGGTGATATAAAAACTGAACTTCATAAGAA ATAGCTCACTATTCATTTGATTCCTGACAAACACTTTATGTTCATCCATATTTGTGAGGTATAATGATTCTGTAGCAAGA ATGAATCTTCTTTCATTCGTGATTCATGTAGGTATAATGCTCTCTTTTGTTTGGTAAACGTGCTTCCTTTGTCTCAATGG TCTAAAATCTAAAGCCTTTCTCAGGGATTAAAAACTCTCCACCAATGATTTAGTGTGTGTTTGGATATGAGTTGAGTGTA AAGTGAATAGACTTTCATCTCAATTGATATCGAAAGACACACCAACTCTGTTTGGATTTCCATTGGGTGAATGTGAAAGC ACATTCTCTCAATCCAACAAGTGCATTCTGTTGGGTGAATGTGCATTGGGGATTGTGATCCTGATTTACGGTACCAAATG TTGTTTTGAGTTGAGAAGAATTACGTTCACTTTTTATCATGAAGTGCGTGCTAACGTCTATTTGTATGTGTTCTAATGGA TCTCCAAACATAGCCTTAATGTTTTCTTGATCTGTGCATGTGTGTATATATGAACATGTGATGATTGGTTTTCTGATATG TTGCATTGATGTGAATATAGATACGTTGTGCTTGGTAGATGTGAGTTACTGTTACATATTTTTGACAAATTCTGGGCATG GTACAGGCACATGGTCTTGAACTGCATATGATATTGATAAGACTACGATCATTGTTGAAATCCCTGGGTGATGATGGCTA GTTCTGGTCCTTCAAGTGCAGAAGGAAAGTCAGTGGCAGTGGATGCTGCTGTTACGAGGAAGCCTCGGATTCTACTAGCT GCTTGTGGAAGTACTGCTGCTGTAAAATTTCCAATTCTTTGTCACACTTTTTCAGATTGGGCAGAAGTAAGAGCAGTTGT CACAACTACAGCTTCACGTTTCATTGATAAAAACACAATTCCAAACAATGTGGTGGCATTTTGTGATGAGCATGAATGGA TTTGTTGGAACAAAATAGGGGACAATTTGCTTCACATTGAGCTTTCTACATGGGCTGATATCATGGTCATTGCTCCATTA TCAGCAAATACTCTTGCCAAGGTAATCAAAGTGATCAAAGTTGACAGATTTTGATTCTTTCTCTCTGCATTGCCCCATGA TAAAAATGTTACTGGGCATTAGGCTTGTCTAAGATTTGCATGTTATACAATTCAAGTGAAAGTAATTCTTGTATTGCAGG AGCATAGTTATTATTTCTTAAATACAGTAATAATATACAACCAATCAAAAAATGAACATAATTTTAAAATAACTCAAGTA AAAGTTTAATTTCCTTTCTATTGTTTTTTAAATGTATCTTTGAAATTTTGATTGGTGATACTTATTGGCCCTATGCTATG CTCAAGCAAGAATTGTTAAAGGGATGAATCCACCATGCTACATATGTTCCTATTCTATCATATGTAATGTTCAGTTTTCA TGTTTACACTTGAATTGGGAAAATTTACGCTCCTCGAGGAGCACATACTCTTTTATTTAAAAAATGATGACACATGACCA TGTATGGTAACTATGGTTAGTTATTCATAGAAAAAACTGTTACTTCTTACAGCATGTTTGGATCATTTTTTTTTCTTCAG AATCAAATCTGCAATCCAGAAGCTACCCATAGAAGCTTCTCCGTATAATTGATTCCGGATATAGAATCAACTGTAAAAGT ATTTCCAAACATGCACTTAATACTGCTTTTTTCGAAGAGTGTACTGAATGTTCAGTACTTCCAGAGGACTGAAATTTTGA TCATTGAATAGGGGCTATGTGCAGGTTACTATTTTAAGCACATAAGCAGTTGAGAATGGTCATTTTCTTCTATTTCTTAT GGAGTATACATGATGTTGCAGATTGCAGGCGGGCTGTGTGACAATCTACTAACATGCATTGTTAGAGCATGGGACTATAG CAAGCCAATGTTTGTTGCACCATCCATGAACAAGTTCATGTGGAGAAACCCTTTCACAGAGAAGCATTTCATGTGCATTG AAGAGCTTGGCGTTTCTCTCATCCCGCCGGTTACGACGAGATCAGCTTCCGGGGATCATGACACTGGTGCAATGGCTGAT CCTACCACCATTTACTCAACTGTGAGATTCTTCTTTGAGAGGCAGATTCTGAAAAAGAAACCCGGTATGGTTTAGCAATG TTGACAATTATGTGAAAGAAAATGCCTTGGCCTCTAAGAGTGTTCCTTGTGCCCCTGGTTATAGCATGTTTGGATTAGCT TCTTTTTACTCCAAGTCAACTCTTATAGAAGCTTCTAGTCAAAATTGATTATGCCTTTAGTTGAAGAAGGATTTCAAAAC ATGCTCTTAGTTGTAGTTGTAGATCAATGTGCATTCTCTTAAGCTCTCTCACACACATTGAAATGTGTTCAGGCGACATC ATTAGGTATGAAATAGTATCATACATAAGATTGTTTCAAGGTCGATAGAATGACCTCAAAATACACATACCATTTTTGCA GTTATATGAGTCAGGAATTACTTAGCGGAAGCCGGTTTTGGGGGTATCTTTTTAACTAATCTTGTGAGATGAGTATGTTA AATGCGGAATGCAAACTGAGTTTAACAGTTCCACTGCATTGCATTTATCACATGCTATGATTCTGATCAATCAGACAATA AGCTAGTTGTTAATTTGTGAATGTAATGATGGCAGTGGATACAGGATGACACCATGTTACAAATAGCTTGTTTTGGATGA ACTTATTTTTCTCCAAGAATCAACCCTGAAATTTAGAAACTACTCACACAAACTTCTCTGCATAATTGATTTTGGCTTTA GAATAGGAGAATTTCCA
CDS sequence (LotjaGi1g1v0465400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGGCTAGTTCTGGTCCTTCAAGTGCAGAAGGAAAGTCAGTGGCAGTGGATGCTGCTGTTACGAGGAAGCCTCGGAT TCTACTAGCTGCTTGTGGAAGTACTGCTGCTGTAAAATTTCCAATTCTTTGTCACACTTTTTCAGATTGGGCAGAAGTAA GAGCAGTTGTCACAACTACAGCTTCACGTTTCATTGATAAAAACACAATTCCAAACAATGTGGTGGCATTTTGTGATGAG CATGAATGGATTTGTTGGAACAAAATAGGGGACAATTTGCTTCACATTGAGCTTTCTACATGGGCTGATATCATGGTCAT TGCTCCATTATCAGCAAATACTCTTGCCAAGATTGCAGGCGGGCTGTGTGACAATCTACTAACATGCATTGTTAGAGCAT GGGACTATAGCAAGCCAATGTTTGTTGCACCATCCATGAACAAGTTCATGTGGAGAAACCCTTTCACAGAGAAGCATTTC ATGTGCATTGAAGAGCTTGGCGTTTCTCTCATCCCGCCGGTTACGACGAGATCAGCTTCCGGGGATCATGACACTGGTGC AATGGCTGATCCTACCACCATTTACTCAACTGTGAGATTCTTCTTTGAGAGGCAGATTCTGAAAAAGAAACCCGGTATGG TTTAG
Protein sequence (LotjaGi1g1v0465400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMASSGPSSAEGKSVAVDAAVTRKPRILLAACGSTAAVKFPILCHTFSDWAEVRAVVTTTASRFIDKNTIPNNVVAFCDE HEWICWNKIGDNLLHIELSTWADIMVIAPLSANTLAKIAGGLCDNLLTCIVRAWDYSKPMFVAPSMNKFMWRNPFTEKHF MCIEELGVSLIPPVTTRSASGDHDTGAMADPTTIYSTVRFFFERQILKKKPGMV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 13 | 206 | 194 | 6.0E-86 | – | |
PANTHER | 13 | 206 | 194 | 6.0E-86 | – | |
SUPERFAMILY | 24 | 202 | 179 | 1.44E-50 | ||
Gene3D | 24 | 213 | 190 | 2.0E-71 | ||
Pfam | 26 | 198 | 173 | 3.2E-42 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. |
Expression pattern of LotjaGi1g1v0465400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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