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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0477600 |
| Transcript ID | LotjaGi1g1v0477600.1 |
| Related isoforms 6 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ribosomal RNA small subunit methyltransferase G; TAIR: AT2G45990.1 ribosomal RNA small subunit methyltransferase G; Swiss-Prot: sp|A1WZH9|TSAC_HALHL Threonylcarbamoyl-AMP synthase; TrEMBL-Plants: tr|I3SD61|I3SD61_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0477600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:98935825..98939054) extracted from Lotus japonicus Gifu genome v1.2.
GCACGTGGTTCGATTTCCACGATGATGGAATTAGGGGCTGTTTGGAATTTGGATGGCACTGAAATACACAGTGTCTTTGA AAAAAGAAGACATTTGCAGTGAAACTGAAAAGGAATAGAGTGAAATGGGAGAGCTTTACGCGCTGGACTTCGATGGAGTC ATCTGTGATAGCTGCGGTGAAAGCTCTCTCTCTGCTCTCAAGGTTCCTCTCCTCTTTCCTTCCCCACAAAACTGAAATAC ACTTGGAAAAAAAAAACAGTGTTTAAACTTTTTATTTTTTATTTTTTTTATAGTTTAAATGTGCTAAAGTTTCAATCTTT TCTTATTTTCATTTTATGGGTATTCATGGATGTGCTGAATTAAGCTCATGGTCATGGTTTACTTTGTTTTACACTCTGCA GGCTGCAAAAGTGAGATGGCCTGGTTTGTTTGATGGGGTGAATTCAGCTACACAAGATTGGATTGTTGATCAGATGCATG CAGTAAAAATTTGTGCTTGATTTTCCTTGGCTTTTGCTTTTATGGATTTTAGGCTAGGAGGCTTTGGTTTTGCTATGTTG GAAGTTTTGTGATTTGATTGGGAAAAAATAATAATTAGTGGAATCATTATAGGAAGGGAGAAGTAAGCTTGAATTTGCAC TTTATTATTAGTTGATTTATCTTTGGAGGCGTTTGATTCGAAAACTGGATATATACCTCAGAGGATTATGCTTTTGAGTG AAGTGTCAAACATTTGTTAACTTCTTAAAATAAGGCAATTTGGAACCATGAAAGTGTAATGTACACAGTCTGCAAACATA CAAAAGGCAATCTTGACCAAAATGCCATGAATCCAATGTATTATGATGACTGAATGTAGATGTAGAGTAGATTTTTTTTT TCACCCTTTATATTATAAGAGGTAATGTCATGAAAATAAAATTTTCACCCATTTTAACTGTCCTGTCTTGAGGCTAATAG ATCATATTTGCTTGATTGCTTCAATAATCATAGATTTCTGTTGCAGATCATTAAACTAATTTATCTCATGATTTTTACTT ACTAATTTCAAGACTATTGCCGTATGGAAGTATGTTGGACTGTTTTCATTTTAAAGATGAACTTCCATACTTGTTCATGT CAGGTGCGACCGGTGGTGGAAACTGGATATGAGAACCTTTTACTTGTAAGATTGTTGCTAGAGACTAGAGCACCTTCCAT CCGGAAGTCATCGGTGGGTAAAATACCTTCCTTATATTTTTTTCTGGTTAATTATTAGCAATTGCAAATTGTGTAACCGG AGCAAGGTTCATAATTTGTGATGATGCCGGTTTCCTTGAATTTGCATCTGCTTCCGAATAACCAGAATGAACCATGGACC TGTTGACTGATGTTATAGTTATTGTGCAAGGTTGCAGAGGGGCTCACAGTTGATGGTATATTGGAGAAGTGGTCCAAGTT GAAGCCTGTTATTATGGAAGAATGGGGTGAGAATAGGGATGCTCTGATAGATCTTTTTGGAAAGGTCAGAGATGAGTGGT TGGAACAGAATTTCGCGACTTGGATTGGTGCAAACAGGTAGGCCTATCAAATCCCCTCACACAAGAGCCCTCTGGACTTG AAGCATAGATACAGCGGACACTCACTAGCTTTATGCTGAAACTCAACTTTTTATTGGAAGAATATTGGAGGAGACTAGAA TTGAAATCTAGATCATAGACTCTTATTGAGGCTTTGATACCTTGTGGTCTACATCATAAACCAACTATTCTAAAAGCTTC AGGTTTTAGCTGAAAGCATATGAATGACTTTACATTATATTTCTAACACACAATAGCTTTATATTATATTTCTAACATTA TGTTAAGGTAGAACAATTTGTATTCTTTCTGTTCAAGTAAGCCCCTTCACAGATAATATTCCACGACGAATCAATTTACA TTAGACTTTGTATTCTCATTATGCTTCAGACTAGATATTGTCATTGAGATCTTGCTCTACTTCTGTTGACGGAATATCTT CATCTTATAAATCATTTTATGCTGTAATGTTTATATTATTTGCAAATTTAATGAATGAGATGTCCTATTACTAATTGGTG ATCCTTTGCTTCTAGAATATATCCTGGAGTTTCTGATGCATTAAAATTTGCGAGCTCAAGAGTCTACATTGTCACAACGA AGCAGGTAACCAATTGGTTTATTGTCCTAAACTCTTAATACCATGAAAACTCATTTAATCAATTTCCCATCATGACCTTT TCACTTTGTCTTTTCTACTCTCCCACCTCCTGGTTCCTCTTATTTCAGAGCCGCTTTGCTGATGCTATACTCCGGGAGCT TGCTGGAGTGACCATACCACCTGAAAGGATATATGGTCTAGGATCTGGGTTAGTATTTGGTACATTTTGTTATACAGTAG AGTATTTATATTTTTATATTGTATCTTTTTTCTTTATTTTGATAAGTAATTAATTTTTCTTGTACTATCTGTAACTTTAT ACCTACAGTCCTAAGGTAGAAGTTCTGAAGCAGCTTCAAAAGAAACCAGAGCACCAAGGGCTGACACTGCAGTAAGATAC TGAGCTATTAGCAATAATTAATGTCACTTTCAATTCAGCTATTCATATGAATAAAACTCTTACCTTGCTAGTTATTGTTT TCTAGAAATTAATTCCAGTTAATTTTATCCAGCTTTGTTGAGGATCGACTTGCTACCTTGAAAAATGTCATCAAAGAGCC TGAGTTAGACCAGTGGAATTTGTATCTAGGTAGTTCTCTCTGCTTGTTTACTATTTTTGCACCCTCCCTCGTTTTGTCTC AGTTCCCAATTAGTGTATTATTGCTTTTTTTTTTCTTGAAAAATGTTGTGTTTACTTGATAAGGATGGTTGTTTGGATCA GGGAATTGGGGTTACAACACTAGAAAAGAGAAAGAGGAAGCTGCAGCTATCTCCAGAATTCAAGTTCTTGAGCTCTCTGA CTTCAGCAAGAAATTGAAATAGGAGCCTGCAATGGATTTGTAATTGTCAAGGATATTGAACCATGAACAATAAAAAGTTT ATAGTAAACACGTTTTTTTTTACTTAGAAAATTCCTCCCTTTTTTCTTGTTAAACTGCAGTAATTTGCATTTCTCCTAAA TGAAGAGAGGATTTCTGATATTCTTGCAATTGTGAAGACAATTTTTTTCAGGAATGTTCATAATCACATGTTCCTTTAGC AGTAAGCACCTCGGCTAAATAAACTTTGTA
CDS sequence (LotjaGi1g1v0477600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGAGAGCTTTACGCGCTGGACTTCGATGGAGTCATCTGTGATAGCTGCGGTGAAAGCTCTCTCTCTGCTCTCAAGGC TGCAAAAGTGAGATGGCCTGGTTTGTTTGATGGGGTGAATTCAGCTACACAAGATTGGATTGTTGATCAGATGCATGCAG TGCGACCGGTGGTGGAAACTGGATATGAGAACCTTTTACTTGTAAGATTGTTGCTAGAGACTAGAGCACCTTCCATCCGG AAGTCATCGGTTGCAGAGGGGCTCACAGTTGATGGTATATTGGAGAAGTGGTCCAAGTTGAAGCCTGTTATTATGGAAGA ATGGGGTGAGAATAGGGATGCTCTGATAGATCTTTTTGGAAAGGTCAGAGATGAGTGGTTGGAACAGAATTTCGCGACTT GGATTGGTGCAAACAGAATATATCCTGGAGTTTCTGATGCATTAAAATTTGCGAGCTCAAGAGTCTACATTGTCACAACG AAGCAGAGCCGCTTTGCTGATGCTATACTCCGGGAGCTTGCTGGAGTGACCATACCACCTGAAAGGATATATGGTCTAGG ATCTGGTCCTAAGGTAGAAGTTCTGAAGCAGCTTCAAAAGAAACCAGAGCACCAAGGGCTGACACTGCACTTTGTTGAGG ATCGACTTGCTACCTTGAAAAATGTCATCAAAGAGCCTGAGTTAGACCAGTGGAATTTGTATCTAGGGAATTGGGGTTAC AACACTAGAAAAGAGAAAGAGGAAGCTGCAGCTATCTCCAGAATTCAAGTTCTTGAGCTCTCTGACTTCAGCAAGAAATT GAAATAG
Protein sequence (LotjaGi1g1v0477600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGELYALDFDGVICDSCGESSLSALKAAKVRWPGLFDGVNSATQDWIVDQMHAVRPVVETGYENLLLVRLLLETRAPSIR KSSVAEGLTVDGILEKWSKLKPVIMEEWGENRDALIDLFGKVRDEWLEQNFATWIGANRIYPGVSDALKFASSRVYIVTT KQSRFADAILRELAGVTIPPERIYGLGSGPKVEVLKQLQKKPEHQGLTLHFVEDRLATLKNVIKEPELDQWNLYLGNWGY NTRKEKEEAAAISRIQVLELSDFSKKLK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 268 | 268 | 3.5E-148 | – | |
| PANTHER | 1 | 268 | 268 | 3.5E-148 | – | |
| SUPERFAMILY | 4 | 202 | 199 | 1.08E-7 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0477600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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