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Field | Value |
---|---|
Gene ID | LotjaGi1g1v0477600 |
Transcript ID | LotjaGi1g1v0477600.4 |
Related isoforms 6 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Ribosomal RNA small subunit methyltransferase G; TAIR: AT2G45990.1 ribosomal RNA small subunit methyltransferase G; Swiss-Prot: sp|P33950|HBPA_HAEIN Heme-binding protein A; TrEMBL-Plants: tr|I3SD61|I3SD61_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0477600 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:98935917..98938806) extracted from Lotus japonicus Gifu genome v1.2.
TTTGCAGTGAAACTGAAAAGGAATAGAGTGAAATGGGAGAGCTTTACGCGCTGGACTTCGATGGAGTCATCTGTGATAGC TGCGGTGAAAGCTCTCTCTCTGCTCTCAAGGTTCCTCTCCTCTTTCCTTCCCCACAAAACTGAAATACACTTGGAAAAAA AAAACAGTGTTTAAACTTTTTATTTTTTATTTTTTTTATAGTTTAAATGTGCTAAAGTTTCAATCTTTTCTTATTTTCAT TTTATGGGTATTCATGGATGTGCTGAATTAAGCTCATGGTCATGGTTTACTTTGTTTTACACTCTGCAGGCTGCAAAAGT GAGATGGCCTGGTTTGTTTGATGGGGTGAATTCAGCTACACAAGATTGGATTGTTGATCAGATGCATGCAGTAAAAATTT GTGCTTGATTTTCCTTGGCTTTTGCTTTTATGGATTTTAGGCTAGGAGGCTTTGGTTTTGCTATGTTGGAAGTTTTGTGA TTTGATTGGGAAAAAATAATAATTAGTGGAATCATTATAGGAAGGGAGAAGTAAGCTTGAATTTGCACTTTATTATTAGT TGATTTATCTTTGGAGGCGTTTGATTCGAAAACTGGATATATACCTCAGAGGATTATGCTTTTGAGTGAAGTGTCAAACA TTTGTTAACTTCTTAAAATAAGGCAATTTGGAACCATGAAAGTGTAATGTACACAGTCTGCAAACATACAAAAGGCAATC TTGACCAAAATGCCATGAATCCAATGTATTATGATGACTGAATGTAGATGTAGAGTAGATTTTTTTTTTCACCCTTTATA TTATAAGAGGTAATGTCATGAAAATAAAATTTTCACCCATTTTAACTGTCCTGTCTTGAGGCTAATAGATCATATTTGCT TGATTGCTTCAATAATCATAGATTTCTGTTGCAGATCATTAAACTAATTTATCTCATGATTTTTACTTACTAATTTCAAG ACTATTGCCGTATGGAAGTATGTTGGACTGTTTTCATTTTAAAGATGAACTTCCATACTTGTTCATGTCAGGTGCGACCG GTGGTGGAAACTGGATATGAGAACCTTTTACTTGTAAGATTGTTGCTAGAGACTAGAGCACCTTCCATCCGGAAGTCATC GGTGGGTAAAATACCTTCCTTATATTTTTTTCTGGTTAATTATTAGCAATTGCAAATTGTGTAACCGGAGCAAGGTTCAT AATTTGTGATGATGCCGGTTTCCTTGAATTTGCATCTGCTTCCGAATAACCAGAATGAACCATGGACCTGTTGACTGATG TTATAGTTATTGTGCAAGGTTGCAGAGGGGCTCACAGTTGATGGTATATTGGAGAAGTGGTCCAAGTTGAAGCCTGTTAT TATGGAAGAATGGGGTGAGAATAGGGATGCTCTGATAGATCTTTTTGGAAAGGTCAGAGATGAGTGGTTGGAACAGAATT TCGCGACTTGGATTGGTGCAAACAGGTAGGCCTATCAAATCCCCTCACACAAGAGCCCTCTGGACTTGAAGCATAGATAC AGCGGACACTCACTAGCTTTATGCTGAAACTCAACTTTTTATTGGAAGAATATTGGAGGAGACTAGAATTGAAATCTAGA TCATAGACTCTTATTGAGGCTTTGATACCTTGTGGTCTACATCATAAACCAACTATTCTAAAAGCTTCAGGTTTTAGCTG AAAGCATATGAATGACTTTACATTATATTTCTAACACACAATAGCTTTATATTATATTTCTAACATTATGTTAAGGTAGA ACAATTTGTATTCTTTCTGTTCAAGTAAGCCCCTTCACAGATAATATTCCACGACGAATCAATTTACATTAGACTTTGTA TTCTCATTATGCTTCAGACTAGATATTGTCATTGAGATCTTGCTCTACTTCTGTTGACGGAATATCTTCATCTTATAAAT CATTTTATGCTGTAATGTTTATATTATTTGCAAATTTAATGAATGAGATGTCCTATTACTAATTGGTGATCCTTTGCTTC TAGAATATATCCTGGAGTTTCTGATGCATTAAAATTTGCGAGCTCAAGAGTCTACATTGTCACAACGAAGCAGGTAACCA ATTGGTTTATTGTCCTAAACTCTTAATACCATGAAAACTCATTTAATCAATTTCCCATCATGACCTTTTCACTTTGTCTT TTCTACTCTCCCACCTCCTGGTTCCTCTTATTTCAGAGCCGCTTTGCTGATGCTATACTCCGGGAGCTTGCTGGAGTGAC CATACCACCTGAAAGGATATATGGTCTAGGATCTGGGTTAGTATTTGGTACATTTTGTTATACAGTAGAGTATTTATATT TTTATATTGTATCTTTTTTCTTTATTTTGATAAGTAATTAATTTTTCTTGTACTATCTGTAACTTTATACCTACAGTCCT AAGGTAGAAGTTCTGAAGCAGCTTCAAAAGAAACCAGAGCACCAAGGGCTGACACTGCAGTAAGATACTGAGCTATTAGC AATAATTAATGTCACTTTCAATTCAGCTATTCATATGAATAAAACTCTTACCTTGCTAGTTATTGTTTTCTAGAAATTAA TTCCAGTTAATTTTATCCAGCTTTGTTGAGGATCGACTTGCTACCTTGAAAAATGTCATCAAAGAGCCTGAGTTAGACCA GTGGAATTTGTATCTAGGTAGTTCTCTCTGCTTGTTTACTATTTTTGCACCCTCCCTCGTTTTGTCTCAGTTCCCAATTA GTGTATTATTGCTTTTTTTTTTCTTGAAAAATGTTGTGTTTACTTGATAAGGATGGTTGTTTGGATCAGGGAATTGGGGT TACAACACTAGAAAAGAGAAAGAGGAAGCTGCAGCTATCTCCAGAATTCAAGTTCTTGAGCTCTCTGACTTCAGCAAGAA ATTGAAATAG
CDS sequence (LotjaGi1g1v0477600.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGAGAGCTTTACGCGCTGGACTTCGATGGAGTCATCTGTGATAGCTGCGGTGAAAGCTCTCTCTCTGCTGCAAAAGT GAGATGGCCTGGTTTGTTTGATGGGGTGAATTCAGCTACACAAGATTGGATTGTTGATCAGATGCATGCAGTGCGACCGG TGGTGGAAACTGGATATGAGAACCTTTTACTTGTAAGATTGTTGCTAGAGACTAGAGCACCTTCCATCCGGAAGTCATCG GTTGCAGAGGGGCTCACAGTTGATGGTATATTGGAGAAGTGGTCCAAGTTGAAGCCTGTTATTATGGAAGAATGGGGTGA GAATAGGGATGCTCTGATAGATCTTTTTGGAAAGGTCAGAGATGAGTGGTTGGAACAGAATTTCGCGACTTGGATTGGTG CAAACAGAATATATCCTGGAGTTTCTGATGCATTAAAATTTGCGAGCTCAAGAGTCTACATTGTCACAACGAAGCAGAGC CGCTTTGCTGATGCTATACTCCGGGAGCTTGCTGGAGTGACCATACCACCTGAAAGGATATATGTTCTGAAGCAGCTTCA AAAGAAACCAGAGCACCAAGGGCTGACACTGCACTTTGTTGAGGATCGACTTGCTACCTTGAAAAATGTCATCAAAGAGC CTGAGTTAGACCAGTGGAATTTGTATCTAGGGAATTGGGGTTACAACACTAGAAAAGAGAAAGAGGAAGCTGCAGCTATC TCCAGAATTCAAGTTCTTGAGCTCTCTGACTTCAGCAAGAAATTGAAATAG
Protein sequence (LotjaGi1g1v0477600.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGELYALDFDGVICDSCGESSLSAAKVRWPGLFDGVNSATQDWIVDQMHAVRPVVETGYENLLLVRLLLETRAPSIRKSS VAEGLTVDGILEKWSKLKPVIMEEWGENRDALIDLFGKVRDEWLEQNFATWIGANRIYPGVSDALKFASSRVYIVTTKQS RFADAILRELAGVTIPPERIYVLKQLQKKPEHQGLTLHFVEDRLATLKNVIKEPELDQWNLYLGNWGYNTRKEKEEAAAI SRIQVLELSDFSKKLK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 256 | 256 | 3.5E-133 | – | |
PANTHER | 1 | 256 | 256 | 3.5E-133 | – | |
SUPERFAMILY | 4 | 191 | 188 | 4.75E-7 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0477600.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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