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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0477600 |
| Transcript ID | LotjaGi1g1v0477600.5 |
| Related isoforms 6 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ribosomal RNA small subunit methyltransferase G; TAIR: AT2G45990.1 ribosomal RNA small subunit methyltransferase G; Swiss-Prot: sp|Q1MAL7|CCMA_RHIL3 Cytochrome c biogenesis ATP-binding export protein CcmA; TrEMBL-Plants: tr|I3SD61|I3SD61_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0477600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:98935926..98938806) extracted from Lotus japonicus Gifu genome v1.2.
AAACTGAAAAGGAATAGAGTGAAATGGGAGAGCTTTACGCGCTGGACTTCGATGGAGTCATCTGTGATAGCTGCGGTGAA AGCTCTCTCTCTGCTCTCAAGGTTCCTCTCCTCTTTCCTTCCCCACAAAACTGAAATACACTTGGAAAAAAAAAACAGTG TTTAAACTTTTTATTTTTTATTTTTTTTATAGTTTAAATGTGCTAAAGTTTCAATCTTTTCTTATTTTCATTTTATGGGT ATTCATGGATGTGCTGAATTAAGCTCATGGTCATGGTTTACTTTGTTTTACACTCTGCAGGCTGCAAAAGTGAGATGGCC TGGTTTGTTTGATGGGGTGAATTCAGCTACACAAGATTGGATTGTTGATCAGATGCATGCAGTAAAAATTTGTGCTTGAT TTTCCTTGGCTTTTGCTTTTATGGATTTTAGGCTAGGAGGCTTTGGTTTTGCTATGTTGGAAGTTTTGTGATTTGATTGG GAAAAAATAATAATTAGTGGAATCATTATAGGAAGGGAGAAGTAAGCTTGAATTTGCACTTTATTATTAGTTGATTTATC TTTGGAGGCGTTTGATTCGAAAACTGGATATATACCTCAGAGGATTATGCTTTTGAGTGAAGTGTCAAACATTTGTTAAC TTCTTAAAATAAGGCAATTTGGAACCATGAAAGTGTAATGTACACAGTCTGCAAACATACAAAAGGCAATCTTGACCAAA ATGCCATGAATCCAATGTATTATGATGACTGAATGTAGATGTAGAGTAGATTTTTTTTTTCACCCTTTATATTATAAGAG GTAATGTCATGAAAATAAAATTTTCACCCATTTTAACTGTCCTGTCTTGAGGCTAATAGATCATATTTGCTTGATTGCTT CAATAATCATAGATTTCTGTTGCAGATCATTAAACTAATTTATCTCATGATTTTTACTTACTAATTTCAAGACTATTGCC GTATGGAAGTATGTTGGACTGTTTTCATTTTAAAGATGAACTTCCATACTTGTTCATGTCAGGTGCGACCGGTGGTGGAA ACTGGATATGAGAACCTTTTACTTGTAAGATTGTTGCTAGAGACTAGAGCACCTTCCATCCGGAAGTCATCGGTGGGTAA AATACCTTCCTTATATTTTTTTCTGGTTAATTATTAGCAATTGCAAATTGTGTAACCGGAGCAAGGTTCATAATTTGTGA TGATGCCGGTTTCCTTGAATTTGCATCTGCTTCCGAATAACCAGAATGAACCATGGACCTGTTGACTGATGTTATAGTTA TTGTGCAAGGTTGCAGAGGGGCTCACAGTTGATGGTATATTGGAGAAGTGGTCCAAGTTGAAGCCTGTTATTATGGAAGA ATGGGGTGAGAATAGGGATGCTCTGATAGATCTTTTTGGAAAGGTCAGAGATGAGTGGTTGGAACAGAATTTCGCGACTT GGATTGGTGCAAACAGGTAGGCCTATCAAATCCCCTCACACAAGAGCCCTCTGGACTTGAAGCATAGATACAGCGGACAC TCACTAGCTTTATGCTGAAACTCAACTTTTTATTGGAAGAATATTGGAGGAGACTAGAATTGAAATCTAGATCATAGACT CTTATTGAGGCTTTGATACCTTGTGGTCTACATCATAAACCAACTATTCTAAAAGCTTCAGGTTTTAGCTGAAAGCATAT GAATGACTTTACATTATATTTCTAACACACAATAGCTTTATATTATATTTCTAACATTATGTTAAGGTAGAACAATTTGT ATTCTTTCTGTTCAAGTAAGCCCCTTCACAGATAATATTCCACGACGAATCAATTTACATTAGACTTTGTATTCTCATTA TGCTTCAGACTAGATATTGTCATTGAGATCTTGCTCTACTTCTGTTGACGGAATATCTTCATCTTATAAATCATTTTATG CTGTAATGTTTATATTATTTGCAAATTTAATGAATGAGATGTCCTATTACTAATTGGTGATCCTTTGCTTCTAGAATATA TCCTGGAGTTTCTGATGCATTAAAATTTGCGAGCTCAAGAGTCTACATTGTCACAACGAAGCAGGTAACCAATTGGTTTA TTGTCCTAAACTCTTAATACCATGAAAACTCATTTAATCAATTTCCCATCATGACCTTTTCACTTTGTCTTTTCTACTCT CCCACCTCCTGGTTCCTCTTATTTCAGAGCCGCTTTGCTGATGCTATACTCCGGGAGCTTGCTGGAGTGACCATACCACC TGAAAGGATATATGGTCTAGGATCTGGGTTAGTATTTGGTACATTTTGTTATACAGTAGAGTATTTATATTTTTATATTG TATCTTTTTTCTTTATTTTGATAAGTAATTAATTTTTCTTGTACTATCTGTAACTTTATACCTACAGTCCTAAGGTAGAA GTTCTGAAGCAGCTTCAAAAGAAACCAGAGCACCAAGGGCTGACACTGCAGTAAGATACTGAGCTATTAGCAATAATTAA TGTCACTTTCAATTCAGCTATTCATATGAATAAAACTCTTACCTTGCTAGTTATTGTTTTCTAGAAATTAATTCCAGTTA ATTTTATCCAGCTTTGTTGAGGATCGACTTGCTACCTTGAAAAATGTCATCAAAGAGCCTGAGTTAGACCAGTGGAATTT GTATCTAGGTAGTTCTCTCTGCTTGTTTACTATTTTTGCACCCTCCCTCGTTTTGTCTCAGTTCCCAATTAGTGTATTAT TGCTTTTTTTTTTCTTGAAAAATGTTGTGTTTACTTGATAAGGATGGTTGTTTGGATCAGGGAATTGGGGTTACAACACT AGAAAAGAGAAAGAGGAAGCTGCAGCTATCTCCAGAATTCAAGTTCTTGAGCTCTCTGACTTCAGCAAGAAATTGAAATA G
CDS sequence (LotjaGi1g1v0477600.5) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGTCATCTGTGATAGCTGCGGCTGCAAAAGTGAGATGGCCTGGTTTGTTTGATGGGGTGAATTCAGCTACACAAGA TTGGATTGTTGATCAGATGCATGCAGTGCGACCGGTGGTGGAAACTGGATATGAGAACCTTTTACTTGTAAGATTGTTGC TAGAGACTAGAGCACCTTCCATCCGGAAGTCATCGGTTGCAGAGGGGCTCACAGTTGATGGTATATTGGAGAAGTGGTCC AAGTTGAAGCCTGTTATTATGGAAGAATGGGGTGAGAATAGGGATGCTCTGATAGATCTTTTTGGAAAGGTCAGAGATGA GTGGTTGGAACAGAATTTCGCGACTTGGATTGGTGCAAACAGAATATATCCTGGAGTTTCTGATGCATTAAAATTTGCGA GCTCAAGAGTCTACATTGTCACAACGAAGCAGAGCCGCTTTGCTGATGCTATACTCCGGGAGCTTGCTGGAGTGACCATA CCACCTGAAAGGATATATGTTCTGAAGCAGCTTCAAAAGAAACCAGAGCACCAAGGGCTGACACTGCACTTTGTTGAGGA TCGACTTGCTACCTTGAAAAATGTCATCAAAGAGCCTGAGTTAGACCAGTGGAATTTGTATCTAGGGAATTGGGGTTACA ACACTAGAAAAGAGAAAGAGGAAGCTGCAGCTATCTCCAGAATTCAAGTTCTTGAGCTCTCTGACTTCAGCAAGAAATTG AAATAG
Protein sequence (LotjaGi1g1v0477600.5) extracted from Lotus japonicus Gifu v1.2 Proteins.
MESSVIAAAAKVRWPGLFDGVNSATQDWIVDQMHAVRPVVETGYENLLLVRLLLETRAPSIRKSSVAEGLTVDGILEKWS KLKPVIMEEWGENRDALIDLFGKVRDEWLEQNFATWIGANRIYPGVSDALKFASSRVYIVTTKQSRFADAILRELAGVTI PPERIYVLKQLQKKPEHQGLTLHFVEDRLATLKNVIKEPELDQWNLYLGNWGYNTRKEKEEAAAISRIQVLELSDFSKKL K
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 8 | 241 | 234 | 4.0E-121 | – | |
| PANTHER | 8 | 241 | 234 | 4.0E-121 | – | |
| SUPERFAMILY | 79 | 176 | 98 | 8.77E-6 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0477600.5, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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