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Field | Value |
---|---|
Gene ID | LotjaGi1g1v0477600 |
Transcript ID | LotjaGi1g1v0477600.7 |
Related isoforms 6 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Ribosomal RNA small subunit methyltransferase G; TAIR: AT2G45990.1 ribosomal RNA small subunit methyltransferase G; Swiss-Prot: sp|A1WZH9|TSAC_HALHL Threonylcarbamoyl-AMP synthase; TrEMBL-Plants: tr|I3SD61|I3SD61_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0477600 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:98936883..98938806) extracted from Lotus japonicus Gifu genome v1.2.
GCCGTATGGAAGTATGTTGGACTGTTTTCATTTTAAAGATGAACTTCCATACTTGTTCATGTCAGGTGCGACCGGTGGTG GAAACTGGATATGAGAACCTTTTACTTGTAAGATTGTTGCTAGAGACTAGAGCACCTTCCATCCGGAAGTCATCGGTGGG TAAAATACCTTCCTTATATTTTTTTCTGGTTAATTATTAGCAATTGCAAATTGTGTAACCGGAGCAAGGTTCATAATTTG TGATGATGCCGGTTTCCTTGAATTTGCATCTGCTTCCGAATAACCAGAATGAACCATGGACCTGTTGACTGATGTTATAG TTATTGTGCAAGGTTGCAGAGGGGCTCACAGTTGATGGTATATTGGAGAAGTGGTCCAAGTTGAAGCCTGTTATTATGGA AGAATGGGGTGAGAATAGGGATGCTCTGATAGATCTTTTTGGAAAGGTCAGAGATGAGTGGTTGGAACAGAATTTCGCGA CTTGGATTGGTGCAAACAGGTAGGCCTATCAAATCCCCTCACACAAGAGCCCTCTGGACTTGAAGCATAGATACAGCGGA CACTCACTAGCTTTATGCTGAAACTCAACTTTTTATTGGAAGAATATTGGAGGAGACTAGAATTGAAATCTAGATCATAG ACTCTTATTGAGGCTTTGATACCTTGTGGTCTACATCATAAACCAACTATTCTAAAAGCTTCAGGTTTTAGCTGAAAGCA TATGAATGACTTTACATTATATTTCTAACACACAATAGCTTTATATTATATTTCTAACATTATGTTAAGGTAGAACAATT TGTATTCTTTCTGTTCAAGTAAGCCCCTTCACAGATAATATTCCACGACGAATCAATTTACATTAGACTTTGTATTCTCA TTATGCTTCAGACTAGATATTGTCATTGAGATCTTGCTCTACTTCTGTTGACGGAATATCTTCATCTTATAAATCATTTT ATGCTGTAATGTTTATATTATTTGCAAATTTAATGAATGAGATGTCCTATTACTAATTGGTGATCCTTTGCTTCTAGAAT ATATCCTGGAGTTTCTGATGCATTAAAATTTGCGAGCTCAAGAGTCTACATTGTCACAACGAAGCAGGTAACCAATTGGT TTATTGTCCTAAACTCTTAATACCATGAAAACTCATTTAATCAATTTCCCATCATGACCTTTTCACTTTGTCTTTTCTAC TCTCCCACCTCCTGGTTCCTCTTATTTCAGAGCCGCTTTGCTGATGCTATACTCCGGGAGCTTGCTGGAGTGACCATACC ACCTGAAAGGATATATGGTCTAGGATCTGGGTTAGTATTTGGTACATTTTGTTATACAGTAGAGTATTTATATTTTTATA TTGTATCTTTTTTCTTTATTTTGATAAGTAATTAATTTTTCTTGTACTATCTGTAACTTTATACCTACAGTCCTAAGGTA GAAGTTCTGAAGCAGCTTCAAAAGAAACCAGAGCACCAAGGGCTGACACTGCAGTAAGATACTGAGCTATTAGCAATAAT TAATGTCACTTTCAATTCAGCTATTCATATGAATAAAACTCTTACCTTGCTAGTTATTGTTTTCTAGAAATTAATTCCAG TTAATTTTATCCAGCTTTGTTGAGGATCGACTTGCTACCTTGAAAAATGTCATCAAAGAGCCTGAGTTAGACCAGTGGAA TTTGTATCTAGGTAGTTCTCTCTGCTTGTTTACTATTTTTGCACCCTCCCTCGTTTTGTCTCAGTTCCCAATTAGTGTAT TATTGCTTTTTTTTTTCTTGAAAAATGTTGTGTTTACTTGATAAGGATGGTTGTTTGGATCAGGGAATTGGGGTTACAAC ACTAGAAAAGAGAAAGAGGAAGCTGCAGCTATCTCCAGAATTCAAGTTCTTGAGCTCTCTGACTTCAGCAAGAAATTGAA ATAG
CDS sequence (LotjaGi1g1v0477600.7) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAGTATGTTGGACTGTTTTCATTTTAAAGATGAACTTCCATACTTGTTCATGTCAGGTGCGACCGGTGGTGGAAAC TGGATATGAGAACCTTTTACTTGTAAGATTGTTGCTAGAGACTAGAGCACCTTCCATCCGGAAGTCATCGGTTGCAGAGG GGCTCACAGTTGATGGTATATTGGAGAAGTGGTCCAAGTTGAAGCCTGTTATTATGGAAGAATGGGGTGAGAATAGGGAT GCTCTGATAGATCTTTTTGGAAAGGTCAGAGATGAGTGGTTGGAACAGAATTTCGCGACTTGGATTGGTGCAAACAGAAT ATATCCTGGAGTTTCTGATGCATTAAAATTTGCGAGCTCAAGAGTCTACATTGTCACAACGAAGCAGAGCCGCTTTGCTG ATGCTATACTCCGGGAGCTTGCTGGAGTGACCATACCACCTGAAAGGATATATGGTCTAGGATCTGGTCCTAAGGTAGAA GTTCTGAAGCAGCTTCAAAAGAAACCAGAGCACCAAGGGCTGACACTGCACTTTGTTGAGGATCGACTTGCTACCTTGAA AAATGTCATCAAAGAGCCTGAGTTAGACCAGTGGAATTTGTATCTAGGGAATTGGGGTTACAACACTAGAAAAGAGAAAG AGGAAGCTGCAGCTATCTCCAGAATTCAAGTTCTTGAGCTCTCTGACTTCAGCAAGAAATTGAAATAG
Protein sequence (LotjaGi1g1v0477600.7) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEVCWTVFILKMNFHTCSCQVRPVVETGYENLLLVRLLLETRAPSIRKSSVAEGLTVDGILEKWSKLKPVIMEEWGENRD ALIDLFGKVRDEWLEQNFATWIGANRIYPGVSDALKFASSRVYIVTTKQSRFADAILRELAGVTIPPERIYGLGSGPKVE VLKQLQKKPEHQGLTLHFVEDRLATLKNVIKEPELDQWNLYLGNWGYNTRKEKEEAAAISRIQVLELSDFSKKLK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 17 | 235 | 219 | 2.2E-119 | – | |
PANTHER | 17 | 235 | 219 | 2.2E-119 | – | |
SUPERFAMILY | 82 | 171 | 90 | 9.01E-7 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0477600.7, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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