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LotjaGi1g1v0481100.2

Overview

Field Value
Gene ID LotjaGi1g1v0481100
Transcript ID LotjaGi1g1v0481100.2
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description Heavy metal transport/detoxification superfamily protein; TAIR: AT1G01490.1 Heavy metal transport/detoxification superfamily protein; Swiss-Prot: sp|O03982|HIP39_ARATH Heavy metal-associated isoprenylated plant protein 39; TrEMBL-Plants: tr|I3T6T6|I3T6T6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0481100
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:99396735..99398449) extracted from Lotus japonicus Gifu genome v1.2.

ATGCAGAAATTTGTGCTCAAGTTGGATTTGCCAGATGACAAGGCTAAACAGAAGGCCCTGAAAACAGTGTCAACACTTCC AGGTACCAAATTAATCATTGCGTTCACCATTTTGTCAACATGATTTGGATGCCTAAATCGGTGGTTTGAGAATGCTCAAA TCAGGGGAATGTTGGGAAAATTTTGAGATCTGGGAGTGGGTGAGTGATGGTAAGTTGGTAACCTTGTAGGCATACGAAAA CTTCCAATATCTTTGACACGTGACATTTGACCAGCAATCTATGTGGACATGGTTATGCTTATTTTTAACGAGTTTAATTT TGGTGGTGTAAAATGTTTTTGCACTCTTCTTATCATATGATGTCATTTTCTTTCAATCTTTTGACTTTGTAAATACTTAT GATATTTTTTATTGAAGAATTCTGGTCATTTTAGTAATAATTCTTATTTTTAAAATCTCTACATCATGTATACCATAGTT TCCTCTCTATTTCTCTTTTCCTGTTATATTTCTTCCCCTTTTTTTCACACTTATTATTGGAGGGGGTTCACACTTTGTTG ATACAGTATCTACCAGCCATTTTGGTTTATTACACTGTATCTCCTGTCTCAATTATTTTTAAGAAACTACTAATTGCATT GTAATTGCCAAACTAATTTTATGTTGTTTGAGAACTATTTTCTTTCTATGATTAACAAGCAACAACAACTCTAAAGATAT CAGTTAACTAGTAAAAAAAATTCGTGTTCTGAAAGGGATATGGTTGGTTGCATCCTCTGTCATATATGAATATGCAGTAC TTAGATTGTAATCCAAGGTAACATTAGTATACTTGAATCATATAATGTAGGGTACAGAATTTTTCTCCGGTTAAGTAGCA CTTTTTTTTTTACAATATATACATATATTGTGTATTGAGATCATAATAGAAGTACGGCTTAATAGCTCTTTTGATCCCTC ACTTATAACAATTTTGCATTTTTTGTCCCTTTAGAAAAAAATTAGCAAAATTAGTCCCTCACATTTACACACTTTTGCAG TTTTAGTCTAAATAGGGATCATTTTTACAAATAAATAAGCAATGTGGAGGACTAAAAGTGCTAATTTTTTTATTGGGGAC CAAAAGTTAAAAACTATGATAAGTGAGGGACCAAAAGAGCTATTAAGCCTAGAAGTTAATCTCCAAAACAGGGTCTAAAG AATATCAAAGCATGTACTAAATTGCCTATTATAAAAAAAATGTACTAAGTTGCCGGTTTAGCCAAATCCTAAAATTCTGC AACCATGTAGGGATTGATGCCATTTCCATGGACATGAAGGAGAAGAAATTAACAGTGGTAGGAACTGTAGATCCAGTCAC TGTAGTGAGCAAATTGCGCAAATACTGGCAAGCAGATCTAGTCTCTGTAGGACCTGCAAAGGAGCCTGAAAAGAAAGAGG AACCAAAGAAAGAAGAACCCAAAAAAGAGGAAGAGAAGAAAGATGAGCCAAAGAGTGAAGAACCCAAGAAAGAAGAGGCG AAGAAGGAAGAGCCAAAGAAAGAAGAAGAGAAGAAAGATGAAAAGAAAGAAGAGGAGAAAAAGAAAGAGCAACCAGCTCA AATTGACCCTGTTTTAGAGTGGGTCAAGGCTTATAGGCAATATAATCCCCACATGACCACATATTACCATGTTCAAAGCA TGGAAGAGAATCCGAATGCTTGTGTGATTTGTTAA
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0481100.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGCAGAAATTTGTGCTCAAGTTGGATTTGCCAGATGACAAGGCTAAACAGAAGGCCCTGAAAACAGTGTCAACACTTCC AGGGATTGATGCCATTTCCATGGACATGAAGGAGAAGAAATTAACAGTGGTAGGAACTGTAGATCCAGTCACTGTAGTGA GCAAATTGCGCAAATACTGGCAAGCAGATCTAGTCTCTGTAGGACCTGCAAAGGAGCCTGAAAAGAAAGAGGAACCAAAG AAAGAAGAACCCAAAAAAGAGGAAGAGAAGAAAGATGAGCCAAAGAGTGAAGAACCCAAGAAAGAAGAGGCGAAGAAGGA AGAGCCAAAGAAAGAAGAAGAGAAGAAAGATGAAAAGAAAGAAGAGGAGAAAAAGAAAGAGCAACCAGCTCAAATTGACC CTGTTTTAGAGTGGGTCAAGGCTTATAGGCAATATAATCCCCACATGACCACATATTACCATGTTCAAAGCATGGAAGAG AATCCGAATGCTTGTGTGATTTGTTAA
Download CDS Sequence

Protein sequence (LotjaGi1g1v0481100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MQKFVLKLDLPDDKAKQKALKTVSTLPGIDAISMDMKEKKLTVVGTVDPVTVVSKLRKYWQADLVSVGPAKEPEKKEEPK KEEPKKEEEKKDEPKSEEPKKEEAKKEEPKKEEEKKDEKKEEEKKKEQPAQIDPVLEWVKAYRQYNPHMTTYYHVQSMEE NPNACVIC
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR45811
1 83 83 1.8E-65 –
Gene3D
G3DSA:3.30.70.100
1 68 68 1.3E-17 –
PANTHER
PTHR45811:SF32
1 83 83 1.8E-65 –
SUPERFAMILY
SSF55008
2 58 57 5.76E-5
IPR036163
Pfam
PF00403
16 58 43 1.2E-6
IPR006121
MobiDBLite
mobidb-lite
64 133 70 - –
MobiDBLite
mobidb-lite
69 131 63 - –
PANTHER
PTHR45811
84 168 85 1.8E-65 –
PANTHER
PTHR45811:SF32
84 168 85 1.8E-65 –
Coils
Coil
101 121 21 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0030001
Biological process Metal ion transport The directed movement of metal ions, any metal ion with an electric charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
Subterm of
GO:0046872
Molecular function Metal ion binding Interacting selectively and non-covalently with any metal ion.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0481100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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