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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0483000 |
| Transcript ID | LotjaGi1g1v0483000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Late embryogenesis abundant protein; TAIR: AT4G13230.1 Late embryogenesis abundant protein (LEA) family protein; Swiss-Prot: sp|Q8LFD5|Y4323_ARATH Uncharacterized protein At4g13230; TrEMBL-Plants: tr|A0A1J7HL35|A0A1J7HL35_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0483000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:99652568..99655355) extracted from Lotus japonicus Gifu genome v1.2.
AAGAAAATTTTATAGAACTCCCTAACAGAGAACTCAAGAAACTAAGTTATATTTAATAAGACAATATGGCAGGATCTAAC CTAGTCACCTCCCTCCCAAAGTTTGGTCATGCTGGAGCAGCAATTGCTAAGGCTCGTGCATGGAATACTAGGGTCTTTGC CGCTGCCACCCCTAGACCTATCCAAGTAAGTAATCTAGCTTTTGTGTGTGTGATCAATTTCGGGAATGACACTGATTGGT GAACCTACGAATAGTGGTAGAAACCAACACCTCTTGATCTTGTCACAAATTCCAGAGTACATATAAATGCAATTTCAACT GTCACAAAATGCAGGTGTTGGGTGTATGCAATAATTTATATGTTCACCAATCACTTTTGTTTGAAAAAAGGAAAAAGAAA GTAGACCACAAAGACTATTCGATGTATGTATGTATGTTTTATACATTTTGTTCTTGTTGTGGAATTGTATAAGGTACACC AGCAACATAGGTGATATACTTTTAACTTATAGAATACTTTAAATTTTGAGTAGTGCTACATTAAATACTTGGCAGTTAGT AAGAAAAGTTTTTCCGCACATAGTAGTTATACCCGAATCGAACAAGATTGTCACAGTAGATAATATTAGTGGGTCAAACC AATTTTTCTTTTCAATAATGCTTAATATTACGATAATAATTTATGACATTTAGACTTCATGTTAATAGTGTTAGTCCAAC ATTTGATAAGTTGAAGGACAACAATAGTTTGTAAATGTGAATGTTGGTAGTCCAATTGCTATGATATTTTTTACTAGACT CTACACACATATTCTGCCAATAGCCATCATTCTCCTGAAGCTACCCATAATTTGGGTTATCATTCAACTAGCCTAATACT TAAATAGTACAAACACCCCATAAATTTATGTACCTCATTTTTTTCTGTCTTTCATTTGATCACATTTATTACTTCTTTTT CTTCTTTTTCATTTCTCACTTTATACATTCATTGGGTGTCTACTAAACATTTTCCTAAAATAATTGCTCAAACGATGAAT ACAAATCGTGCTATTTAACATTAGGAAAATACTATTTGTCATGAAATTTTTTATCCACGAATGTTTATGAATATACATGG CAGTTGAACATTGGTTCATGACAAACCAAAGTCTATGATTTCTGTAAAACATCACTCTTCAATTCAAAATGTTTACCGTG CTCGTGAGTTTCATCAAAACATACTTCGCACCACGTAGCATTAAAGTTAACTTGTGATAAGTTAGACATTTTTTTTAGAA ACTACTGTAGAATTTGCAAGCCAATATATATTACATCACCGATTTTATACGATGTAGTTTGCACGTACAATCCATTTTTT CATTCTAATCTTTTGTCTTGAATAATTGTACACTATCTTAATTTGCAGGTTCCAACTTCACATGATCAGGAAGGCTCAGT AACCTCTGATGGCCTGAACACTACAGAAACAATCAATAACAGTTTGAACGAACCACTGCAAGACAAAGCTTACAGCTCCA ATGCTGCAGAGCATGTAATATATATTTTTTATAAGCAAAATATATTGATAGCTAGCACAAGGGGTGCTAGACCCTGATAC AAAGGGGACAAGAGCAAAAACAGAGCAAAGAATCTAAAACTAACTAAGCCCACAAAGAAACTAACAACCTTAGCTAGGCC AAAAAATAGCAACTCATGTAATATATGCAATCATCGATAGAGAAGTTATACGATGAACCATTTTTAAGTGGTGCACCAGT AATCCACTGTTAATTGATGTTGGTATTATAATTTTTTTAATGAACCAACAACTATTAAATAACTGTGGATCATCAATGAG CCATTGAAAAAATTGATCACCCTATAGCTTCCCAATAGTGGTGACACATTTTTGTTTGGGTGAAATCACATTCATATACT TATATCCCGATGATAGTCACATATGAATATATATTTAGTTTCACATATATAATTAGATTAAATAATTTTTTCTCTGTATC TAATTTTATATGATTCAAGCAGATTAATAACAAGGCAAAAGACACTGCTAATCAGATATCAGACAAAGCACAAAACATTA CTGAAAAAGCAAAGCAGACAATGCAAGAGGCATGGGACTCCACTAAAAACAATGCCAATAAGGCTGCAGACAATGTGTTG GGAAAGACTCAAAAGTCTGCTGAATATGTCAAAGAAAATGCAGAGACTGTGAAGGAGAACATGAACAGCAAGAACAGGAA CTGAGATTCTCAAACACCATTTTTTTCAATTAATCTATGATGCTACCACATCATATACATTTCATATTTACCATTTAGCC ATTGTTTGTCCTTTTTGTTTGTTTAATAATTTTTTATTCATGGAGATGGAGAAGATATGTATCTTCCCAATGACATATGT GAGACACAAAATGTCATTAAATTGTTTCAACAGTCAATAAATACGTTTTTATCTCTCTTTCTCTCCCTCTTTTACTTTTT TATTTATATATATATATATATAGGGTGTACCATATGAGAAAACCTTTCTTACGTGAGAAAGATAGGAATAATTCGTAGGG AATGATTGCAGCGACATGGTTGGGTTTGCAACGATGGAGAACTACGTTTTATAGTGAGGCAGAACGCATAACTACGAAGC AAAGGAACGACGGCGATTTCAGCGACAACACAACACAACTCCTTCTTCGTTTCACTGTGAGGCACAAGAATGAGGATTGA GAACGCACAAGGCGATGGAGAACTTTGTTTCCAGAACAATGAACGCACAAGTGAGTAGAGAAACAAAG
CDS sequence (LotjaGi1g1v0483000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAGGATCTAACCTAGTCACCTCCCTCCCAAAGTTTGGTCATGCTGGAGCAGCAATTGCTAAGGCTCGTGCATGGAA TACTAGGGTCTTTGCCGCTGCCACCCCTAGACCTATCCAAGTTCCAACTTCACATGATCAGGAAGGCTCAGTAACCTCTG ATGGCCTGAACACTACAGAAACAATCAATAACAGTTTGAACGAACCACTGCAAGACAAAGCTTACAGCTCCAATGCTGCA GAGCATATTAATAACAAGGCAAAAGACACTGCTAATCAGATATCAGACAAAGCACAAAACATTACTGAAAAAGCAAAGCA GACAATGCAAGAGGCATGGGACTCCACTAAAAACAATGCCAATAAGGCTGCAGACAATGTGTTGGGAAAGACTCAAAAGT CTGCTGAATATGTCAAAGAAAATGCAGAGACTGTGAAGGAGAACATGAACAGCAAGAACAGGAACTGA
Protein sequence (LotjaGi1g1v0483000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAGSNLVTSLPKFGHAGAAIAKARAWNTRVFAAATPRPIQVPTSHDQEGSVTSDGLNTTETINNSLNEPLQDKAYSSNAA EHINNKAKDTANQISDKAQNITEKAKQTMQEAWDSTKNNANKAADNVLGKTQKSAEYVKENAETVKENMNSKNRN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 40 | 113 | 74 | - | – | |
| PANTHER | 75 | 150 | 76 | 6.0E-12 | – | |
| PANTHER | 75 | 150 | 76 | 6.0E-12 | – | |
| Gene3D | 76 | 154 | 79 | 5.2E-7 | – | |
| Coils | 84 | 111 | 28 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0483000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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