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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0502100 |
| Transcript ID | LotjaGi1g1v0502100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RNA recognition motif; TAIR: AT3G01210.1 RNA-binding (RRM/RBD/RNP motifs) family protein; Swiss-Prot: sp|Q9LFD5|BPA1_ARATH Binding partner of ACD11 1; TrEMBL-Plants: tr|I3S1Y5|I3S1Y5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0502100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:101897730..101903939) extracted from Lotus japonicus Gifu genome v1.2.
AATTTACTAATTAAAATTAAAAAAATTTGTAACTACCTAGTCTTATGTGGCATAATGTGATTGGACGTCAGTGTAAAACT TCTTTACACTGACCGTACATATCCATTAATCTCTATCTTTTTTTTTACTTACTATTTCATGAAGGTGGAAGAAACGTCGA CATAACTTTTTCCTACCTCCAAATAATCCAATTATAGTTTGGATTGGTTAGGCATCTTTATTCACACCACACATACACAT ACACTCTCTCTCTCTCTCTCTCTGCTCCTTTGAGAATTGAGGCTCCTCTGCTTCAGTTCACTAAGAAGAAGAACTGATAG GTAATCTGGCCTTTTTCACCAGTTTATATTTTGATAGGATCATATCAATTTTGCAAGTGGGGTTTTTAACACTTGATGTT CAAGCCCAGTTTCATGTTTTGGAGTTTGTCTTTCCATTGGTTGTTGGGTGTGTTCTCATTTGATATAAATTATAATGTTC CTTGGCATGCCAGGCCAGGATCAAGATATGTTTTCTTAAATAAGATATAAAACAATTGATATAAGTTATGTGATTTGTTG CATCATTCTCTGTGCTGTAATTGAGGTTGATTTGTGTTGGGGACCACTGAATGTTTTGGAATTTGATATCTGTGGTTAGA TGAAGTGAATGCTCCTAGTGATAGATAATATTTTCTATTCTTCACTACACTGTTTCTGTCTTCTGATCTTCATTGTTTGT TCTTACAATGCATGGTCTTATTAATAGAGCAATCAAGGGGTAAACCAAACCTGTGCTGCTGTTCAGCTCTCAAAGTTTTG ATTTGCATTGCTTTCTGCAGGTTTATTAAATCAGGTTCCTTTTTCCAATTCGAGATTTTTAGTCACTTGGCAATTATGGA TCATGGTGGTTACACTGCTGAAGTTACAAGCTTATCCCCAAGAGCTACAGAGAACGATGTGCGCAATTTTTTTGCATACT GTGGTGTAATTGAGCATGTTGATGTGATAAGGTAATGTTAGACCCTAAAATCTATACCTTATTTACTGATAAAACTCCGC TGCAACAAAATCGAATCTTTTGATAGGTTTGGGTTAAATGTTCAAATGTTATAAATTTTTATGCATTTTTTCTTGATTTA TGATTACATGTTGGACTAATAATTTTAATTAGTCTATACATCTTCAAGATATATAGAGGAGTGTATCAAGTAATAGTGTG GGAGAGACTAATCTTGACTATCCATGTAATAAGAGATAAACTACATGGAGTTCTATTTCATGATTTCACACTATTAGAGA ATGGAACGAAATTTCATGCTTAAACAACCTTATAAGACCAGTAGTGCTATTTCTCATGACATTAGCCCCTCTCAGATCAG CGTGTTGGACTACGTGCTTGCTTGGATCAATGTTGTCTAAAATTGATTTTGATCGAATTATTTTGTTAAAATTGATTATG ATAAACATGAGTTGAGAGTGATGTGATTTTTATAGGGTAATGTTGTGAAATTCAGTTGTAAAATCTCAGAATTAATTATG TTCAATGAAGAAGATAGTCTCTCTAGCTTCCAGTAGAGATGATTTCGGGGCTGAAATCAATTCTCCAAAATGACACGCAA ACATCTATATTGTCGTCCTATCAAAATCGATTCTGAGGTTCCCAACGGGGAACTAAACACACAATACAAGCATAATGAAC ATAATGATATACCAAAATTATAATTTTCAGTTTCCTTTTGGTGATTGTTGTTTTGTGCATCACTAAATACTACCATGATA CTATCTGTTCCTGCCAGGCTGCTGCTGAAATAGTGTCTGATAAGATAATATGTTGAACGCTGATAGACACAGCAAGAAAT TGATATTTTAGTTAGAGATGTCTGAATCATGTTGGTTGATGACTATCCTTACACTGTCTTTGCCTCCTTGAAATTTAATG CTGAAAGAGAAATATGTGTATTCTGTATTTAAACTGCTGTTTGCATTGTCTACTTTATGTCAATAACTTTGTTTTGACTG ATTCCGGTTTGTCTCAATTTCTATGTTGATACAATGTGTTCTTGTTACTATTTATCTGGAAAAGAAATAGATTGCACATT CTACAATGCCTTTTTCCTATTATTCAATAAAGGATTTCGCTATTAGTCCATTATGGATTGCCTAGATTTGACAACAGTTC CATCAATTATTAAGATACCAATTAAGGAGGCTGAAAATTTCTCCTTAGTTATAATTTCCATAACATTTTTTAATCAGTAA CAATTAGTAATTTAGCATGCTAATCCATCTCAAGAAGATTCGAAAAATAATAATAATTAGCATGCTGATATAGAACATTT TAAAGATGTTGATAATATGTTCCTTCACTTTATTTCACAGAGCTCTTGGATAGAAAGATTGTATACTTGTAAGTTACAAG ACTTAAATGATTGAAATGTCAGTTGACTTCTCAGTTATAATCTGTGAAGAATTCTCCGAATTAATAGGAAGAGTTGCTCT TTTGTCATGATACAGATTTGGTGAAGATGATTCTACCGCATATGTGACTTTTAGGGATGCTTATGCTCTGGAAACTGCAT TATTGCTCAATGTAAAGTTCTTATCCTCTTGCTTCCTTGCTCTCTTATTGTTAGATCTGTCAATTATTGTTTTCGTCTCT GATGATATGGCAAGACACAGCTTAGACACAATATGGACAGGACCATTCAAATTGAACACACACACAAAGGTTGAGCGCAT TTTAAACTTTTAAGCAATTTTGAGTTATAAAAGAAAGGAAACTAGGTGGGGATGCTCTTGTCCCATGCCATTTCATTTCT CCCGACATTTTTCATTTCATTCTCCTCAGTTGGAGCTGGAGAGTGTCTGCTCCGGTGAAGGCGAGAACAACATTGTTGGA GAGCAAAGTGAAGTTAATCTTCAGATACTAATTCTAGTTAAAAAAATTCGGTTATACATATACTGATATACTTGAAAATT GTTATGGCTAGTTCTATTAGGAGAAGTTTTTCTGTGATGGTTTTGGGAAAAAGTCTGTAGATTTAACGGTTCATGCTTTT TGGGAGAGGGTATAGCAAGTACTGCCACATATGGCATACATCAAGAGTTTTCTAATTCCAGAAATTGTGTGTATGATATT GTATATTATAAATAATTTCCTTAAAATTTGAATTATTCATGCCGTGTCCATGTCGTGCAGTTTTTATGTCAGGTGAGTTT CTGTGTCCATGTTGTGTCATATTGCAGGTTTTTGTCAATGCCCATTCTTCATAGTTTGTTACATGTGGTAATTTGCTATC CTAATGAGATGCAGAATGGATCTGAAATCTCCTTATTTTCTTTTGAACTTCTTATGGAGTAAATTTATCTCTAAATTGAA GTTCAGTATCAAAATAATGAGAAACCTATATTTGATCCTGTCCTTTCTAATATAGTTCAGGAAAGGGTGATAAATTATGA ATTATATATGAATTTTGTTAGGCCCTGGGATTTCCAAGCAGGCCCAAATGTCACTAAGGAGCCTTTGATTCATTATTCAA CCAAGGAATATGGATAGTGCATTCTAGAAGGGGCAAAGTGGGGATTACTAGTAACTCCCTAACAGAATAGAGAGAGAGAG GATTATGATTGTAATGACCATCTAACAATATAAAGGGAGGAAGGAAAGGTTGAGAGGGTATCTTGATTCTAAGCTAAATA GAGATATGAGTAGGAAGCTTTGAGCTTCCTATAGGAGCCTAGCTCTGTGTCAGAATCGGATTCCATTCCCTTTCTGTTGT AATCCCTTTTTATCATCAAATAAGCAATCTATCAATTCAGTTCTTACACTTTCTTTACAGTTCTCAATTGTTAGGATCTA GGTTCCTAACAAATTTTCAATTCTGTTGCATGGGAGAAAATAGTGCACTAAACTTTGTAACATTTGTACCTCTTCAATTG AATCTGTTGCTGAACATTTGCTATTCAGTAACCTTGCATTGTCTGCCTTGAGTATTTTTGTTTGCTAACCTGGATAATTT TTTGTCAAATGCTGTTTCAGGGATCCATGATTTTGGACCAAGGCGTATCCATTTCACGCTGGGGCTCTTACATAGATGAA TGCAATAATTGGAACAGTCATGAATCACAGCCTGAATACAGTATTACAACCTCACAAGTATGCCTGAAATCCATCCTTAG GAAGATCTCTTGCTTTTAGTTTGACCAAAATGCGAAAATTTGTTTTTTTAAATACAGATTCCTTGACCAAGCTATCAAAT TGAGATTATCATTTTGATACTGTGGGCTAGACATGAGAAGGTATATATTCTGAAGAAATTAGACATTGTTTGAAACTTGG GGAAAATAGTCTTGTGTTTTTCCGCAAATTTCAAAATGGGGTTCGTGAAAATTGGACTCTCTTAAAAGTTACCAGTACTT TGTCTCCTAGATGCTTATCATACTTCTTTTGTATGTATTTTTCAATTTTATATTATATTATTTTAAACATTTTAAAAAAT AGTAATGAAGTAATCTGATATCAAAGCCCAACTAATATTTGAATGTATGCATAACTATCTTCCATTAACTGCAAATAGTT TGTTTTCCTTGACAGGATGTTCACATGGATAAGTTTGTTTCTTCCCCTGGAGAAGCATTAACTATGGCCCAAGAAGTTGT CAAAACAATGGTAGCTAAGGGATACGTGTTGGGAAAAGATGCATTTGTCATGGCAAAAGCTTTTGATGAATCTCGCAATG TATCATCTGCAGCAGTAGCCAAGGTTGCAGAACTCAGTACCAAAATTGGGTTGACTGATACCATTAACTCCAGCATCGAA ACTTTTAAATATGTGGATGAGAAGTATCATGTTAGCCAGATCACTAAATCCGCTGCGACGGTGACGGGGACAGCAGCTAT AGTTGTGGCAACAGTTACTGGGAGAGCAGCTGCGGCGGCTGGTAGTGCAATCGTCAATAGCAGCTACTTTGCAAAAGGAG CTCACATGGCTTCAGATATGTTATCTCGCGCAGCCAAAGCGGCAGCTAATTTGGGTCAGCATGAAAATAAATGAAACTCC AAACTTACAACTGCTCTCTACTATGTTCTGTTGTTGTTCACAAAAAAATAGAAGTAATTGTTTGTTGATACTGTAATGGA ATGTGGCTACTCATCTGGTGCTAATGTTCATATCATTAGTTTTGAGGGATCCATGGTAAGCAGCCACTTCTTTTATCCCT TTTAGAAATTAGAGCACTTGGTAGAGTTTGCAGTTGTAAGTGTTAAGCGCATGTTTGGACTCCATTTACAATTGATTCTA AAATCAAAATCAATTATGAGCAGAAGCTCCTATGAATAGCATCTGAGTATCATAATTAATTGTGAGAAAAGAGAAATTAA TCCAAACATACTAAGTTTTTTTGTTATCTACCTTTAAATTCACTGGTTTAGGGTATCTTAGATACTCGTTAGTACTAGTG CAACAAATGTTAACACTCACTTCAAGTCTAAAAGTAAATGGAACTCTTCTTCGTGTGTGTGTGTTTGTACAAAGTTATGG ATTGGTCGAAAGCACATTCAATGTGTCTTGGCAAAAATACAAAATCACCCTAATGTACCGAGATGAAAGTTCACATTGTA CTTCATATGTATCTATACACACACTTAGTAGTTCATTTGGCATTTTTACAAACACATTCTTCCCTTTGTGCCTAAAATTA GACTAATGTCTGAATTTGGAGCAAGTTGAGCAACATATGAAAGATGGCACCCCAATTAGACCCTGGATTGCTGATAATAC AATCACTTAACTGATTTAAGTAGATTTATAATTATTGCATCAATACTCTCTTCATTGATGCTGCCAACACACAGTTGTAA CTTTCAAAACACAAGCTCTCAACAGTTTACATAACAACATGTGAACTACTTTCTAATATTTTAATGGTGCAACAGATTCC ATGCCAACCAGATTGTTATGATTTTATAGGCATTCCCAGCCAACTTATCCTATTGCAAACTATCTATCTATCATTCTCTT TACAACCCAACTACTACTTTGCCGTAGCCGACCTACTTTGTGCAATAATAAATAGTTTACATGGAGAGAATGATCTTAAT TATCTTCTCATTTCTTTTTCTCATGAATCGTGCCAAAAGGAAACTATAACCATATTTTTGCAAGCTTTTCATTGAAAGTC ACTTTGATCACACAAGTATCATGGGGTTTTGTAGGCCTAGTTGAATTGGT
CDS sequence (LotjaGi1g1v0502100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATCATGGTGGTTACACTGCTGAAGTTACAAGCTTATCCCCAAGAGCTACAGAGAACGATGTGCGCAATTTTTTTGC ATACTGTGGTGTAATTGAGCATGTTGATGTGATAAGATTTGGTGAAGATGATTCTACCGCATATGTGACTTTTAGGGATG CTTATGCTCTGGAAACTGCATTATTGCTCAATGGATCCATGATTTTGGACCAAGGCGTATCCATTTCACGCTGGGGCTCT TACATAGATGAATGCAATAATTGGAACAGTCATGAATCACAGCCTGAATACAGTATTACAACCTCACAAGATGTTCACAT GGATAAGTTTGTTTCTTCCCCTGGAGAAGCATTAACTATGGCCCAAGAAGTTGTCAAAACAATGGTAGCTAAGGGATACG TGTTGGGAAAAGATGCATTTGTCATGGCAAAAGCTTTTGATGAATCTCGCAATGTATCATCTGCAGCAGTAGCCAAGGTT GCAGAACTCAGTACCAAAATTGGGTTGACTGATACCATTAACTCCAGCATCGAAACTTTTAAATATGTGGATGAGAAGTA TCATGTTAGCCAGATCACTAAATCCGCTGCGACGGTGACGGGGACAGCAGCTATAGTTGTGGCAACAGTTACTGGGAGAG CAGCTGCGGCGGCTGGTAGTGCAATCGTCAATAGCAGCTACTTTGCAAAAGGAGCTCACATGGCTTCAGATATGTTATCT CGCGCAGCCAAAGCGGCAGCTAATTTGGGTCAGCATGAAAATAAATGA
Protein sequence (LotjaGi1g1v0502100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDHGGYTAEVTSLSPRATENDVRNFFAYCGVIEHVDVIRFGEDDSTAYVTFRDAYALETALLLNGSMILDQGVSISRWGS YIDECNNWNSHESQPEYSITTSQDVHMDKFVSSPGEALTMAQEVVKTMVAKGYVLGKDAFVMAKAFDESRNVSSAAVAKV AELSTKIGLTDTINSSIETFKYVDEKYHVSQITKSAATVTGTAAIVVATVTGRAAAAAGSAIVNSSYFAKGAHMASDMLS RAAKAAANLGQHENK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 255 | 255 | 9.2E-123 | – | |
| PANTHER | 1 | 255 | 255 | 9.2E-123 | – | |
| SUPERFAMILY | 5 | 77 | 73 | 3.12E-11 | ||
| ProSiteProfiles | 6 | 80 | 75 | 9.985 | ||
| SMART | 7 | 76 | 70 | 8.2E-5 | ||
| Gene3D | 9 | 76 | 68 | 1.3E-9 | ||
| Pfam | 10 | 69 | 60 | 1.7E-7 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi1g1v0502100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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