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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0506900 |
| Transcript ID | LotjaGi1g1v0506900.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box protein; TAIR: AT3G52680.2 F-box/RNI-like/FBD-like domains-containing protein; Swiss-Prot: sp|Q9LXJ6|FDL21_ARATH F-box/FBD/LRR-repeat protein At3g52680; TrEMBL-Plants: tr|G7L2Z5|G7L2Z5_MEDTR F-box protein; Found in the gene: LotjaGi1g1v0506900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:102514635..102516996) extracted from Lotus japonicus Gifu genome v1.2.
AAAAAATTTAAAACGTATCTTAGGCATATATTATTTTTTTCGGAAACAACCAATTGTAGATAATTTTGTTTCAAAATCAA ATCAATCTTGATATATTTTGTTTAAAAATCAGATAGGTTGTTAATTATATGTCAAGTGCTTGCTGGTTCCTTGACTCCTC TATTGTTTCGAATTCAATATTTGGTGACATTCTTCACTACTCTATCTCTTCTCCCTTCTCTTTTTCCAATGGGGTGTACA CATCTAGAAGAGTCTCCCCTTACAGTGCGGTGTGTTCTCCATTCAGATGTTAAGGGAGTTAAGTTTGATTTATTTGCGTT TGTTTTTGTTGTTTTTCTTTATTGTTTTGTCAAATGTTGTTTGCATCAAATAATTTTATATTCTGTATAATTCCAATCAT AATTTCTTGTTGTTTTGGAAAAAATTGACTACAGAAAAGAGATTATATTAGCGAGTTACCTGATTGCATCTTGTCTTATA TCCAATCAATGGTATCCATGAAAGATATGATGAACACTTGCGCACTCTCTAAAAGGTGGAGCAACTTGTGGCATCTGAGG AGAGATCTGAACTTTGATGTGCACAATGTTTTTGGAAGTGAAGAGGAATTACTAGATAAGGGATATCTTGCTATTGAGAA GGTCTATGAATATTCAAGAAAAGATATTTCAGATGTGTGCAAAGATGAATTCATAAAACGAGTAAATCAATTTGTCAAGA ATTTTAAAGGAATCATGATTGATTCATTCATGGTGAAGTTCAACAATTTAAATCACAGACATAGCAAAAATATTGATGAA TGGATCAAGTTTGCAATTTCAAGAGGAGTTGGAAGAATTGATTTGCTCCTCTATCAAGAACCAGGTCATTATAAAGGCAC ACGTTACACGTTTCCTTTTGGCTTATCTTTTGAGTGTAAGAGTTCAAGACTCAAGCATATGCATTTGGTTGGTTGTAAAC TTGTTTGTCCTCCATCAAACTTTGATATTTTCCCATTCACAAATTTGAAATCTCTTGTGCTTGAAAGGTCACGTGTGGAT GTAAAGTTGCTCACAACTCTATTATCTAATTGTCTTCTACTTGAAGAGCTCAACTTAGAGTCTTGTAAGGTTAATTCATC AAGCTTAAAAATAGTAAGCTCATCATTATGCCATCTCAAGCTTCTTTGGTGTGAAGCAAGTAAAGATGAGGAATTAGAAT TCATTTCATTGGATTGCCTAAAACTCACATCATTCTACAGCTGCCATATGAATCCTTCACCAAGCTTTTCAATGAATACT CCTATTCTGAAGACCATTGACCATTTTGATTTCCCTGGGGGAATATATAATGCATTTTCCTTCTTTGCAACTGTTTCTAC GCTTGAGATTCTGAATTTATGCATCTATTATAACTGCTGCCCTTGCTGCTCTGGTAAGGTAAGCCTAGAAACTGTTTGAA CATTCAATATTTAACTTGCCTTTGGCATTTGATTTTCACCCTATATTTTAAAATGTCCTTGTTCAGGGAATAAGTATACC ACTTCAAACTACACTGGAAAATCTCAGGGAACTCAACTTGAGAGTTGTTTCACAGTTTGATATTTGGTGGATTTTAGACG TCCTTAAAGCGTCTCCGTTTCTGCAGAAACTTTCAGTCATGGTGAGTTAGTAGAGTTAATTCATATGCCTTATTTTGTTT TCTATTCTTATGTTTCCATACATTCTGGTTTGCACTCACTAATATAAGTTTGCTAGATTGGCATGTTTTTACCATAGTTA AAACTATTTATCACTTTTTTTCCAGATAGAGTATCCATCGTTTGATGCAAATGAAACAGATATTGATGATCTCCCAATGT TCTCTCACGATGAGATAAAAGTTATCGAGTTAGGAGGCTGTGTGGGAAACTGGTATGAAATTGAGTTTGCCATGAATGCT TTAAAGTATATCCACACACTTGAGCGAATAGTTTTGAGTCCTTATTGGAAAGATGAAATGTCTCCAAATAATGGCCAGCA ATGCGATCCATCATGGCCTAATGGTCGTAAAGGAATCCTCGAAAAGCTTCAAGACGAAGGGATTGAACTAGACAAACTTG TACTTCTGTAAGATTATATAATTTTTGGTCTTCAAAACATTGCTGTAATTTTCATTATCTTTGGCTTGGGTCTTCTTGTG AGGGGTCATTTGATTTGGATTGATTTATATCACTCACTTGGGAGATTGTTCCCAAGACCTTGTTCTTATTTGAATTAAAT CTTCTCTTTTCTAAAAACGAAGATTACATAACTTTTGCACAATTTTTCTTTTTATATTTTGTAGAATAATATGATGAACA TTTATGATAATTTTACTCCTTGTTATTATGCTAATTATGGTT
CDS sequence (LotjaGi1g1v0506900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTATCCATGAAAGATATGATGAACACTTGCGCACTCTCTAAAAGGTGGAGCAACTTGTGGCATCTGAGGAGAGATCT GAACTTTGATGTGCACAATGTTTTTGGAAGTGAAGAGGAATTACTAGATAAGGGATATCTTGCTATTGAGAAGGTCTATG AATATTCAAGAAAAGATATTTCAGATGTGTGCAAAGATGAATTCATAAAACGAGTAAATCAATTTGTCAAGAATTTTAAA GGAATCATGATTGATTCATTCATGGTGAAGTTCAACAATTTAAATCACAGACATAGCAAAAATATTGATGAATGGATCAA GTTTGCAATTTCAAGAGGAGTTGGAAGAATTGATTTGCTCCTCTATCAAGAACCAGGTCATTATAAAGGCACACGTTACA CGTTTCCTTTTGGCTTATCTTTTGAGTGTAAGAGTTCAAGACTCAAGCATATGCATTTGGTTGGTTGTAAACTTGTTTGT CCTCCATCAAACTTTGATATTTTCCCATTCACAAATTTGAAATCTCTTGTGCTTGAAAGGTCACGTGTGGATGTAAAGTT GCTCACAACTCTATTATCTAATTGTCTTCTACTTGAAGAGCTCAACTTAGAGTCTTGTAAGGTTAATTCATCAAGCTTAA AAATAGTAAGCTCATCATTATGCCATCTCAAGCTTCTTTGGTGTGAAGCAAGTAAAGATGAGGAATTAGAATTCATTTCA TTGGATTGCCTAAAACTCACATCATTCTACAGCTGCCATATGAATCCTTCACCAAGCTTTTCAATGAATACTCCTATTCT GAAGACCATTGACCATTTTGATTTCCCTGGGGGAATATATAATGCATTTTCCTTCTTTGCAACTGTTTCTACGCTTGAGA TTCTGAATTTATGCATCTATTATAACTGCTGCCCTTGCTGCTCTGGTAAGGGAATAAGTATACCACTTCAAACTACACTG GAAAATCTCAGGGAACTCAACTTGAGAGTTGTTTCACAGTTTGATATTTGGTGGATTTTAGACGTCCTTAAAGCGTCTCC GTTTCTGCAGAAACTTTCAGTCATGATAGAGTATCCATCGTTTGATGCAAATGAAACAGATATTGATGATCTCCCAATGT TCTCTCACGATGAGATAAAAGTTATCGAGTTAGGAGGCTGTGTGGGAAACTGGTATGAAATTGAGTTTGCCATGAATGCT TTAAAGTATATCCACACACTTGAGCGAATAGTTTTGAGTCCTTATTGGAAAGATGAAATGTCTCCAAATAATGGCCAGCA ATGCGATCCATCATGGCCTAATGGTCGTAAAGGAATCCTCGAAAAGCTTCAAGACGAAGGGATTGAACTAGACAAACTTG TACTTCTGTAA
Protein sequence (LotjaGi1g1v0506900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVSMKDMMNTCALSKRWSNLWHLRRDLNFDVHNVFGSEEELLDKGYLAIEKVYEYSRKDISDVCKDEFIKRVNQFVKNFK GIMIDSFMVKFNNLNHRHSKNIDEWIKFAISRGVGRIDLLLYQEPGHYKGTRYTFPFGLSFECKSSRLKHMHLVGCKLVC PPSNFDIFPFTNLKSLVLERSRVDVKLLTTLLSNCLLLEELNLESCKVNSSSLKIVSSSLCHLKLLWCEASKDEELEFIS LDCLKLTSFYSCHMNPSPSFSMNTPILKTIDHFDFPGGIYNAFSFFATVSTLEILNLCIYYNCCPCCSGKGISIPLQTTL ENLRELNLRVVSQFDIWWILDVLKASPFLQKLSVMIEYPSFDANETDIDDLPMFSHDEIKVIELGGCVGNWYEIEFAMNA LKYIHTLERIVLSPYWKDEMSPNNGQQCDPSWPNGRKGILEKLQDEGIELDKLVLL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 3 | 423 | 421 | 4.8E-36 | – | |
| PANTHER | 3 | 423 | 421 | 4.8E-36 | – | |
| Gene3D | 73 | 422 | 350 | 1.5E-13 | ||
| SUPERFAMILY | 138 | 354 | 217 | 4.97E-11 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0506900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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