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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0506900 |
| Transcript ID | LotjaGi1g1v0506900.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box protein; TAIR: AT3G52680.2 F-box/RNI-like/FBD-like domains-containing protein; Swiss-Prot: sp|Q9LXJ6|FDL21_ARATH F-box/FBD/LRR-repeat protein At3g52680; TrEMBL-Plants: tr|G7L2Z5|G7L2Z5_MEDTR F-box protein; Found in the gene: LotjaGi1g1v0506900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:102514648..102516943) extracted from Lotus japonicus Gifu genome v1.2.
CGTATCTTAGGCATATATTATTTTTTTCGGAAACAACCAATTGTAGATAATTTTGTTTCAAAATCAAATCAATCTTGATA TATTTTGTTTAAAAATCAGATAGGTTGTTAATTATATGTCAAGTGCTTGCTGGTTCCTTGACTCCTCTATTGTTTCGAAT TCAATATTTGGTGACATTCTTCACTACTCTATCTCTTCTCCCTTCTCTTTTTCCAATGGGGTGTACACATCTAGAAGAGT CTCCCCTTACAGTGCGGTGTGTTCTCCATTCAGATGTTAAGGGAGTTAAGTTTGATTTATTTGCGTTTGTTTTTGTTGTT TTTCTTTATTGTTTTGTCAAATGTTGTTTGCATCAAATAATTTTATATTCTGTATAATTCCAATCATAATTTCTTGTTGT TTTGGAAAAAATTGACTACAGAAAAGAGATTATATTAGCGAGTTACCTGATTGCATCTTGTCTTATATCCAATCAATGGT ATCCATGAAAGATATGATGAACACTTGCGCACTCTCTAAAAGGTGGAGCAACTTGTGGCATCTGAGGAGAGATCTGAACT TTGATGTGCACAATGTTTTTGGAAGTGAAGAGGAATTACTAGATAAGGGATATCTTGCTATTGAGAAGGTCTATGAATAT TCAAGAAAAGATATTTCAGATGTGTGCAAAGATGAATTCATAAAACGAGTAAATCAATTTGTCAAGAATTTTAAAGGAAT CATGATTGATTCATTCATGGTGAAGTTCAACAATTTAAATCACAGACATAGCAAAAATATTGATGAATGGATCAAGTTTG CAATTTCAAGAGGAGTTGGAAGAATTGATTTGCTCCTCTATCAAGAACCAGGTCATTATAAAGGCACACGTTACACGTTT CCTTTTGGCTTATCTTTTGAGTGTAAGAGTTCAAGACTCAAGCATATGCATTTGGTTGGTTGTAAACTTGTTTGTCCTCC ATCAAACTTTGATATTTTCCCATTCACAAATTTGAAATCTCTTGTGCTTGAAAGGTCACGTGTGGATGTAAAGTTGCTCA CAACTCTATTATCTAATTGTCTTCTACTTGAAGAGCTCAACTTAGAGTCTTGTAAGGTTAATTCATCAAGCTTAAAAATA GTAAGCTCATCATTATGCCATCTCAAGCTTCTTTGGTGTGAAGCAAGTAAAGATGAGGAATTAGAATTCATTTCATTGGA TTGCCTAAAACTCACATCATTCTACAGCTGCCATATGAATCCTTCACCAAGCTTTTCAATGAATACTCCTATTCTGAAGA CCATTGACCATTTTGATTTCCCTGGGGGAATATATAATGCATTTTCCTTCTTTGCAACTGTTTCTACGCTTGAGATTCTG AATTTATGCATCTATTATAACTGCTGCCCTTGCTGCTCTGGTAAGGTAAGCCTAGAAACTGTTTGAACATTCAATATTTA ACTTGCCTTTGGCATTTGATTTTCACCCTATATTTTAAAATGTCCTTGTTCAGGGAATAAGTATACCACTTCAAACTACA CTGGAAAATCTCAGGGAACTCAACTTGAGAGTTGTTTCACAGTTTGATATTTGGTGGATTTTAGACGTCCTTAAAGCGTC TCCGTTTCTGCAGAAACTTTCAGTCATGGTGAGTTAGTAGAGTTAATTCATATGCCTTATTTTGTTTTCTATTCTTATGT TTCCATACATTCTGGTTTGCACTCACTAATATAAGTTTGCTAGATTGGCATGTTTTTACCATAGTTAAAACTATTTATCA CTTTTTTTCCAGATAGAGTATCCATCGTTTGATGCAAATGAAACAGATATTGATGATCTCCCAATGTTCTCTCACGATGA GATAAAAGTTATCGAGTTAGGAGGCTGTGTGGGAAACTGGTATGAAATTGAGTTTGCCATGAATGCTTTAAAGTATATCC ACACACTTGAGCGAATAGTTTTGAGTCCTTATTGGAAAGATGAAATGTCTCCAAATAATGGCCAGCAATGCGATCCATCA TGGCCTAATGGTCGTAAAGGAATCCTCGAAAAGCTTCAAGACGAAGGGATTGAACTAGACAAACTTGTACTTCTGTAAGA TTATATAATTTTTGGTCTTCAAAACATTGCTGTAATTTTCATTATCTTTGGCTTGGGTCTTCTTGTGAGGGGTCATTTGA TTTGGATTGATTTATATCACTCACTTGGGAGATTGTTCCCAAGACCTTGTTCTTATTTGAATTAAATCTTCTCTTTTCTA AAAACGAAGATTACATAACTTTTGCACAATTTTTCTTTTTATATTTTGTAGAATAA
CDS sequence (LotjaGi1g1v0506900.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGGTGTACACATCTAGAAGAGTCTCCCCTTACAGTGCGGTGTGTTCTCCATTCAGATGTTAAGGGAAAAAGAGATTA TATTAGCGAGTTACCTGATTGCATCTTGTCTTATATCCAATCAATGGTATCCATGAAAGATATGATGAACACTTGCGCAC TCTCTAAAAGGTGGAGCAACTTGTGGCATCTGAGGAGAGATCTGAACTTTGATGTGCACAATGTTTTTGGAAGTGAAGAG GAATTACTAGATAAGGGATATCTTGCTATTGAGAAGGTCTATGAATATTCAAGAAAAGATATTTCAGATGTGTGCAAAGA TGAATTCATAAAACGAGTAAATCAATTTGTCAAGAATTTTAAAGGAATCATGATTGATTCATTCATGGTGAAGTTCAACA ATTTAAATCACAGACATAGCAAAAATATTGATGAATGGATCAAGTTTGCAATTTCAAGAGGAGTTGGAAGAATTGATTTG CTCCTCTATCAAGAACCAGGTCATTATAAAGGCACACGTTACACGTTTCCTTTTGGCTTATCTTTTGAGTGTAAGAGTTC AAGACTCAAGCATATGCATTTGGTTGGTTGTAAACTTGTTTGTCCTCCATCAAACTTTGATATTTTCCCATTCACAAATT TGAAATCTCTTGTGCTTGAAAGGTCACGTGTGGATGTAAAGTTGCTCACAACTCTATTATCTAATTGTCTTCTACTTGAA GAGCTCAACTTAGAGTCTTGTAAGGTTAATTCATCAAGCTTAAAAATAGTAAGCTCATCATTATGCCATCTCAAGCTTCT TTGGTGTGAAGCAAGTAAAGATGAGGAATTAGAATTCATTTCATTGGATTGCCTAAAACTCACATCATTCTACAGCTGCC ATATGAATCCTTCACCAAGCTTTTCAATGAATACTCCTATTCTGAAGACCATTGACCATTTTGATTTCCCTGGGGGAATA TATAATGCATTTTCCTTCTTTGCAACTGTTTCTACGCTTGAGATTCTGAATTTATGCATCTATTATAACTGCTGCCCTTG CTGCTCTGGTAAGGGAATAAGTATACCACTTCAAACTACACTGGAAAATCTCAGGGAACTCAACTTGAGAGTTGTTTCAC AGTTTGATATTTGGTGGATTTTAGACGTCCTTAAAGCGTCTCCGTTTCTGCAGAAACTTTCAGTCATGATAGAGTATCCA TCGTTTGATGCAAATGAAACAGATATTGATGATCTCCCAATGTTCTCTCACGATGAGATAAAAGTTATCGAGTTAGGAGG CTGTGTGGGAAACTGGTATGAAATTGAGTTTGCCATGAATGCTTTAAAGTATATCCACACACTTGAGCGAATAGTTTTGA GTCCTTATTGGAAAGATGAAATGTCTCCAAATAATGGCCAGCAATGCGATCCATCATGGCCTAATGGTCGTAAAGGAATC CTCGAAAAGCTTCAAGACGAAGGGATTGAACTAGACAAACTTGTACTTCTGTAA
Protein sequence (LotjaGi1g1v0506900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGCTHLEESPLTVRCVLHSDVKGKRDYISELPDCILSYIQSMVSMKDMMNTCALSKRWSNLWHLRRDLNFDVHNVFGSEE ELLDKGYLAIEKVYEYSRKDISDVCKDEFIKRVNQFVKNFKGIMIDSFMVKFNNLNHRHSKNIDEWIKFAISRGVGRIDL LLYQEPGHYKGTRYTFPFGLSFECKSSRLKHMHLVGCKLVCPPSNFDIFPFTNLKSLVLERSRVDVKLLTTLLSNCLLLE ELNLESCKVNSSSLKIVSSSLCHLKLLWCEASKDEELEFISLDCLKLTSFYSCHMNPSPSFSMNTPILKTIDHFDFPGGI YNAFSFFATVSTLEILNLCIYYNCCPCCSGKGISIPLQTTLENLRELNLRVVSQFDIWWILDVLKASPFLQKLSVMIEYP SFDANETDIDDLPMFSHDEIKVIELGGCVGNWYEIEFAMNALKYIHTLERIVLSPYWKDEMSPNNGQQCDPSWPNGRKGI LEKLQDEGIELDKLVLL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 17 | 67 | 51 | 1.4E-5 | – | |
| SUPERFAMILY | 24 | 78 | 55 | 7.06E-10 | ||
| PANTHER | 29 | 464 | 436 | 3.1E-42 | – | |
| PANTHER | 29 | 464 | 436 | 3.1E-42 | – | |
| Gene3D | 114 | 462 | 349 | 2.6E-13 | ||
| SUPERFAMILY | 179 | 395 | 217 | 5.76E-11 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0506900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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