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LotjaGi1g1v0508800.1

Overview

Field Value
Gene ID LotjaGi1g1v0508800
Transcript ID LotjaGi1g1v0508800.1
Lotus japonicus genome version Gifu v1.2
Description F-box protein; TAIR: AT4G00160.1 F-box/RNI-like/FBD-like domains-containing protein; Swiss-Prot: sp|Q8LF09|FDL23_ARATH F-box/FBD/LRR-repeat protein At4g00160; TrEMBL-Plants: tr|G7L2Z5|G7L2Z5_MEDTR F-box protein; Found in the gene: LotjaGi1g1v0508800
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:102777641..102782403) extracted from Lotus japonicus Gifu genome v1.2.

GGTCTCCTCCTGCAGTGCCTCGTCTTCTCCAATCAGATGTTGAGGGAGTTAAGTGTTATTTTTTATTTCTCATGATGTGC TGTTTCCATGACATAACTGTTACGTATAATTTTAAGTCAAGTCAATTTAATTTATTAATTTTTTGCTGTTCTGCAAAATT TTCACAGCCAAAAGTGGATTATATTAGTGCGTTGCCTGATTGCGTCCTGTCTTGTATCCTATCAATGATATCCATGAAAG ATATGATGAAAACTAGCATACTGTCTAAAAGGTGGTGCAACCTCTGGCATCTACGGAGAAATCTCAAATTCGATGCTCAC AATATGCTTGGAAATGGTCGTATTATGAGCAGTCATGATGAAAGGAATGAATTCGTAAAACGAGTGAATCAATTTCTCAA GAATTATAAAGGAACAAAGATTGATTCATTCATGGTAGATTTCGAATTAAATTACGAGCCGAGCAGCACCATCGATGAAT GGATCAGGTTTGCAATTGCAAGAGGAGTTGGAAGAATCGAGCTGCTTACACCATCTTATTACAAGTTTCCCTTTGGCTTA TCTTTTGAGGGTAAAGATCCGACACTCAAGCATATGCATCTCAGACGGTGTATAATTTGTGATCCTGGAACATGGTTTGG CAGATTTTGGCGTATGGAAACAAAAGAAAATTGTCATCCTGCAACAAACATTGACCTTTTTACGTTCACAAATTTGAGAT CTCTTAAAATTGAAGGTTCAACTGTGGATGTAAACTTGCTCACAACGCTGCTATCTAATTGTCTCCTACTTGAAGAGCTC AGCTTAATTAGTAGCAGCATAAATTCATCATCCTTAAAAATAGAAAGTTCATCATTATGCCATCTCAAGATTGAAGAGTT GTTCTGTTCAAAAAAAAAGATTGAAGAGGATTTGGACGACCACCATTACCATAGGCATTTAAAATTCATTTCCTTGGATT GCCCAAAACTCACATACTTCTATTTTGACAACACTATATCAGGGAGCTTATCGATGAATGCTCCTATATTGAAGACTATT GAATATATTGTTTCCTCTCATGCTGAGAAAATACATGATGCTTTTGCCCTCTTCGCCAAGCTTCCTAAGCTTGAGACTCT GAATTTATACATCAATAAAAATACTTTTGAGGTTAGCCTGAGAAACTGTCTGAACAGTCTAGATTTTAGTTTCTTTTGGT ATTTTAGTTTCATCAATATTTTAAATGTCATTGGTCAGGTAACACCATTACAAGGTATTCAAACACTGGAAAATCTCAGA CAATTCAACTTGAGCATTGATGCTACATATGAGGATTTTGATATTTGGTGGATTTTACCTATTCTTCAAGCTTCTCCCTT TCTGCAGAAACTTTCAGTTACGGTGAGTCAATACACATGCCTTATTTTGTTTTTTGTGGTTAATTATTTTATCTCATATT TAACCATCCATAGCTCTGAACCATGTTTTTATTATTAATATTTATTAGAAACCCTAATAGGGTGAAAAGAAAAGGAATGG AAATTATTTTCTATTAATTTAACGTATCAAATACAGCAGAGAGGTTCTCTTTATATAGAGACCTTGGAGGCTGGAAGGCT TGCACAGCAAGCTTATCTTAACAAACCCTAGCCGTCACAGAGGCTACAAATAACCTAGCTGCCACATAGGCTACAAATAT TTATTTTAATATAAAATAACAGTTATACTAATTATCTCTAATACTCCCCCCACAAACTGAACTGTGCATATCTGTCACGG TCAATTTGGCTCTCAAATCTTTGAATAAAGCTGAACTGAGGGGTTTGGTGAGAACATCAACAAGTTGGTCTGTTGCAGGA ATATGCTGCACATGTAGTTGTTGTGCAATGACCTTTTCACGAACAAAAAACAGATCTAACTCCATATGCTTAGTTCTGGA GTGTTGGACCGGATTGTGCGAGAGCATAATTGCACTTAGGTTATCACACAACAGAGTAGGTGTAGTGGCAGTGACCTTGA GTTCTTGGAGAAGGGACTGAATCCACAATAAATCTGTTGTGGCCTGAGCAAGACTCCTATATTCAGCTTCGCAGGTGCTG CGAGCAACCACTGTTTGCTTGCGTGACCACCACGTAATGAGGTTTGGTCCGAGAAAAATACAAGCACCTGAAGTAGATCT GCGATCATTTGGGTCAGTTGCCCAATCGGCATCACAAAAACCCATCAAGGACAAGGGAACACTGCGTGGATCAGGTTTGA GATGAAGGCCAAAATGCTGACTTCCTTGAAGATACCTCAGAATACGTTTGACAGCCAACCAATGACATTCCTTGGGATTT GACATGAATTGGCATACCTTATTAACAGAGAAACTGAGTTCTGGTCTTGTAATAGTAATATACTGCAACGCCCCTATTGT GGAGCGATAAAGTGTAGGGTCCCTAAAAGGAGAGTCCCCATCACGGGTAAGCTTCAATCCGGCAACCATTGGGGAAGAAA TTGGACTGCAATCCGCCATTTTGGATTTTTCAAGCAGGTCGCGAATGTATTTCCTTTGGGAGAGCATAATGGAATGATCT GCCAGATGTTTTACTTCAATGCCCAAGAAGTAGACAAGTTGTCCTAGATCTTTCAAGGCAAAAACATCTTTCAACTTTGA AACAAAGAGTTTAACTAAAGAAGCTGAAGGACCTGTGATAATAATGTCATCCACATATACAAGAGCATACATTGTAGTTG TGGAAGAGGTGTAAACAAAAAGTGAGGGATCACACTTGCTTGAAACAAATCCAAACTGCAAGAATGTTGATCTTAACCTC TCATACCAAGCTCGTGGGGCCTGTTTCAGTCCATAAAGAGTCTTGTTTAACTTGCAAACTAAGGTCTTATCATTGCTCTC AAAACCTGGGGGTTGTGTCATATACACTTCCTCTTCCAGAGTGCCATTAAGGAAGGCATTGTTGATATCAAGTTGTTGAA TGCACCAGTGATTGGTGACAGCCAGAGTCAACATTACTCTTATTGTGTCAGGTTTCACAACAGGGGAGAAGGTTTCCTTG TAGTCAAATCCAAACTGTTGATGAAGTCCTTTTGCAACCAGTCTTGCCTTGAGCTTCTGAACCGAGCTATCGGGGTTTTG TTTAACCCTAAACACCCACTTACAACCAATAGAAACTCTGTTAAGAGGTAAGGGTACTAAAGTCCAGGTACCATTCTGAT GCAGTGCAGATATTTCTTCATGCATAGCTGTTGTCCAACCTGGATCCTGCAAAGCCTGTTTGGCAGTACTGGGTTCAGCA GTAGTTAGTAACAATGTAGGATTCAACCTTGGTTTAAAAATTCCATTCTTTGACCTGGTTTGCATAGGATGTGTATTAGG GACAGGAGGCGATTGATGAACTGCAGAATTTGGTAAGGGTGAAGTTGCAGTTTGTGCAGGTGAAACTGACTCAGACTCAG ATTGAGGAACAGTTGAGACTCATGGAGTGGAGAATGGGGCTGTGAGGAAATGCTCTCAGTTGCAGGTATAGGTATCTGAT TTTCTGGAGGAACTATGGGATCATTGAGTCGACTAGAAACAACATGAGGTGGTGGAGTGGAGAAATCATTAGTGACCTGT GGTGGCACTAGCGAAGGAATAATAGGAGTAGAGGAAGGTATGGGACTTTGATCAGTAGGTGAGACCGAAGAAGCTGTGGG AAAAAGCCTAGGATAAGGAAAGCTTGTCTCATGGAAAACAACATCCTTAGAAATGATTATCTTTCCTTCAGATGTAAGAC ACTTATACCCCTTGTGCATAGTAGAGTATCCTAAGAAAACACACTCTTGAGACCTAAATTCTAACTTGTTTGTATTGAAA GGTCGAAGGTGTGGGTAACAGGAGCAGCCAAAAACATGTAAGAATTTGTAATCTGGTGAAGTTTTGTACAGCTTGAAAAA TGATACTTGATCCATATGCTGGTCTATATATAATATTTAATACATGTTATTTACAATATATTTCTTATATTTTTTATAAG CACGATATATTTTTTATGTGCTCAAACTAATTTATAGAAAATCAATTTTAACTTGTAAACTAATTTTTTTAGTGCATGGT AGGCAAACCTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATAT ATCCATACATTCTGGTTTACGTACATGCATTAGTTAGTATAAGTTTGTTGTATTGGTAATATTTTTAGCATCATTAACAT TATTTAAAACTTTTTTTTCCAGCTGAGACATGCTTTGTTTCTTCCAAACCAAAGCCCTCAAAATCTCATAATGTTCTCTC ATGGTGAGATCAAAGTTGTTGAGCTAGGAGGATGTGTGGGAAATTGGTATGAAATTAAGTTCGCCATGAATGCTTTGAAA TATTTCGACAAACTTGAGCAAATGGTTTTGAGTCCTTATTGCACTTATAAAACCTTCGGCGGAGAAGGAGACTACACAGC TCACAATCCAAGATGGTTTAAAAAGAATCGTCGTACAAGAATCCTTGAAAAGTTTCAAGCTGAAGGGATTGAACTAGATA AACTTAGAATCGTGTAAGAATGTATAAATTCTGCATCCTTTATTTTGGATATCGGTAGAATTGAATAATATGATTTTAAT AATCAATTAATGCGGATAATTTTAGTCTTGGTTATGATCCCAAATTCCCAATCATGTTCAATGTACTAATATGCAGAATT ACATATGTGAATATGGTTGGGCGTGAACTTAATCCTTGTGAAT
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0508800.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGATATCCATGAAAGATATGATGAAAACTAGCATACTGTCTAAAAGGTGGTGCAACCTCTGGCATCTACGGAGAAATCT CAAATTCGATGCTCACAATATGCTTGGAAATGGTCGTATTATGAGCAGTCATGATGAAAGGAATGAATTCGTAAAACGAG TGAATCAATTTCTCAAGAATTATAAAGGAACAAAGATTGATTCATTCATGGTAGATTTCGAATTAAATTACGAGCCGAGC AGCACCATCGATGAATGGATCAGGTTTGCAATTGCAAGAGGAGTTGGAAGAATCGAGCTGCTTACACCATCTTATTACAA GTTTCCCTTTGGCTTATCTTTTGAGGGTAAAGATCCGACACTCAAGCATATGCATCTCAGACGGTGTATAATTTGTGATC CTGGAACATGGTTTGGCAGATTTTGGCGTATGGAAACAAAAGAAAATTGTCATCCTGCAACAAACATTGACCTTTTTACG TTCACAAATTTGAGATCTCTTAAAATTGAAGGTTCAACTGTGGATGTAAACTTGCTCACAACGCTGCTATCTAATTGTCT CCTACTTGAAGAGCTCAGCTTAATTAGTAGCAGCATAAATTCATCATCCTTAAAAATAGAAAGTTCATCATTATGCCATC TCAAGATTGAAGAGTTGTTCTGTTCAAAAAAAAAGATTGAAGAGGATTTGGACGACCACCATTACCATAGGCATTTAAAA TTCATTTCCTTGGATTGCCCAAAACTCACATACTTCTATTTTGACAACACTATATCAGGGAGCTTATCGATGAATGCTCC TATATTGAAGACTATTGAATATATTGTTTCCTCTCATGCTGAGAAAATACATGATGCTTTTGCCCTCTTCGCCAAGCTTC CTAAGCTTGAGACTCTGAATTTATACATCAATAAAAATACTTTTGAGGTAACACCATTACAAGGTATTCAAACACTGGAA AATCTCAGACAATTCAACTTGAGCATTGATGCTACATATGAGGATTTTGATATTTGGTGGATTTTACCTATTCTTCAAGC TTCTCCCTTTCTGCAGAAACTTTCAGTTACGCTGAGACATGCTTTGTTTCTTCCAAACCAAAGCCCTCAAAATCTCATAA TGTTCTCTCATGGTGAGATCAAAGTTGTTGAGCTAGGAGGATGTGTGGGAAATTGGTATGAAATTAAGTTCGCCATGAAT GCTTTGAAATATTTCGACAAACTTGAGCAAATGGTTTTGAGTCCTTATTGCACTTATAAAACCTTCGGCGGAGAAGGAGA CTACACAGCTCACAATCCAAGATGGTTTAAAAAGAATCGTCGTACAAGAATCCTTGAAAAGTTTCAAGCTGAAGGGATTG AACTAGATAAACTTAGAATCGTGTAA
Download CDS Sequence

Protein sequence (LotjaGi1g1v0508800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MISMKDMMKTSILSKRWCNLWHLRRNLKFDAHNMLGNGRIMSSHDERNEFVKRVNQFLKNYKGTKIDSFMVDFELNYEPS STIDEWIRFAIARGVGRIELLTPSYYKFPFGLSFEGKDPTLKHMHLRRCIICDPGTWFGRFWRMETKENCHPATNIDLFT FTNLRSLKIEGSTVDVNLLTTLLSNCLLLEELSLISSSINSSSLKIESSSLCHLKIEELFCSKKKIEEDLDDHHYHRHLK FISLDCPKLTYFYFDNTISGSLSMNAPILKTIEYIVSSHAEKIHDAFALFAKLPKLETLNLYINKNTFEVTPLQGIQTLE NLRQFNLSIDATYEDFDIWWILPILQASPFLQKLSVTLRHALFLPNQSPQNLIMFSHGEIKVVELGGCVGNWYEIKFAMN ALKYFDKLEQMVLSPYCTYKTFGGEGDYTAHNPRWFKKNRRTRILEKFQAEGIELDKLRIV
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Gene3D
G3DSA:3.80.10.10
1 414 414 2.3E-15
IPR032675
PANTHER
PTHR31639
2 414 413 8.7E-38 –
PANTHER
PTHR31639:SF113
2 414 413 8.7E-38 –
SUPERFAMILY
SSF52047
158 356 199 1.26E-10 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0508800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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