Transcript — View — Lotus Base

Overview

Field	Value
Gene ID	LotjaGi1g1v0509900
Transcript ID	LotjaGi1g1v0509900.1
Lotus japonicus genome version	Gifu v1.2
Description	TPX2 (Targeting protein for Xklp2) family protein; TAIR: AT5G15510.1 TPX2 (targeting protein for Xklp2) protein family; Swiss-Prot: sp\|F4I2H7\|TPX2_ARATH Protein TPX2; TrEMBL-Plants: tr\|I1KWD0\|I1KWD0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0509900
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr1:102873183..102876103) extracted from Lotus japonicus Gifu genome v1.2.

GTTATTAAGAAAATACATAGAAACAGAGTTAAAAATAAAAAATCAATGATCCAATTGAGCCCCAGCAAAACTAGCCGTTA CGCACAGAGCCTCAGTTTAACGTTCCAATTTTCCTCCTCTTTCTCTCAAATCCCTAAATTTTCTTCCTCATCGCAAAAAC TTCACTACTCTTTCTCTTTACCGATTGCAGAATCACACGATTTTCTCCGACGAACATGGCCACCGCCCAGAACGCCGTCG CAGCAGCCGTGACTCCACGGCGGTGCCGATCCAAGATTCAAGAATTGCCCAAACACGCTGAGAATCTCAACCCTAATGTT CTCCAACAACAACAACAACAAAGCCCAGGTTGTAGAAAACCATTGATCCCTAACTCTTCTTCTTCTGCTTCTTCAATTTC ACCATCTTCTCCTTCTCCTTCTTCTTCCCCTGTTGTGAGCAAGTCTTGCTCTGTAACTGCCAGCAAGTCTCAGAAGCCGA AGAACCCTGCTATCCCCATTTCCTCTTTTACCCCTCGGACCAAGATCCGTCAGAGGAAGTTCGTTGTGGCGAAGAAGACG CAGAAGGAGGAGGAACAGGAGAAAGAGAAGGAGCGTTCTGCAGGCGAAACGACGTCGTTTTGCAAGTGCAAGGAGAAGAA AGGGAGTGGCGGTGGAATCAGGGGTAAGTGCCTATGTGTGGCTTACCACAATCTGAGGAAGTCACAGGAAGAGTTCTTCA AGAATCGGTGTGATGGTGATGATGATGGTGGTGATGAAGATGAAGAAATTGAGTGTGTGGTTGAAACAGAGGAAATGGGA AATGGTGGTTTGGGTGAGACAGAGTGTGGAGGTTTGGCAATGAAACGCACGAGGGAGAGGTTGGTGAAGGCGGCAATGGA GAAGGAGAGTGGTCCTCAAAGTGGGGGGTCTGGGAAAGTGAAGAATTTGGTGCAGGCTTTTGAGAAGCTTCTTCTGGCTG GACCCATTTCCAAGGATGAAGGAGATCATAAGGAGAAGGAAGAGGAGGAGGAGGAGAAGGAACCTCAACAGAATGATCAC AAGGTGATGAAATGGCCACCGACAAATTTGACTTTGACATCCCAAAACCTTGGTTTGGATCCACGTGATTCTGTTTCTTC TTCTTGGGATAGCGGTAGAGGAAGGTATGATTCTACTCAATGCTTGTTTGGTTTTGATTATAAGCTGATTTGAGCAAAAG CTATGTGTTAATTTAAGTGCTATTTTAAGTGTTGTTGTTGATGTTTGTTATCTTTCTACAAGCTGCAGTTTGTCTAGGAG GACATCCAATGGGGGAAGAAGCAGCAGGAGAAATGTAAGACTTGAGTCTAAGTTACTTTTTTGCATGATGATTTGTGATT CATTCATCAACCAGAGTTGTGAGTTTTGTAATTGAATCAATTTCAGAGCTTGGAATCATCAAGCACTTTTGGGGGAAGGA GGTGGAAAAAGAAGCAGCAGAAAATCACCAATCCAAGGCCATTCAAGTTAAGAACTGAGGTAATTGCTTGGAATTAATTG ACATCATATAAGTTCACTTATTAATGTTGTTCTTGTTGTTTTCCAAAGACTTTGAATGATAACATTTTTAATGGAATGCT TACAGCAAAGGGGAATGTTAAAAGAGGAAGAATTTGTAAAGAAGGTACAAGAGATGATGACTGAAGAAGAGAAGCAGAGG GTACCAGTGGCTCAGGGTCTTCCTTGGACAACTGATGAACCTGAGGTAAGGTTATTTTGCTAAGAAATGAAGTACTTTGT CTGAGTTCTGTTTGACTATGTTGTGGTCCGGAACACTAAATTGGAAGAAAGCACTATATGTCTTATGTTTGCAAAATTGC AAATGCTAAAATGACTTCCTTTATATTCTTGGTTGCCTGCTATTTCAGTGCTTGGTAAAACCTCCAGTGAAGGAAATTAC TATACCGGTTGACTTGAAGCTTCATAGTGATGTGCGAGCAGTGGATCGCGCTGAGTTTGACAATCAGGTGCTGCCTCCTT CATCTCTTATACTTATCTTTTATAATGCTCTGGATAATTTAGTTCTAGGGATAATTTTAATTCCTTGTCATAGACGTGTC AATAATTTAGAATTTTCATTTGTGGAAGATGTGAAAGTAAATGGAATCAAGATTTGATTGAATGTTGAATTATGCAGGTA GCAGAAAAGTTGAGCCTAATGGAGCAATACAAATTGGAGAAAGAGAGACAACAAAAGGTGCACTATTATTGTTATTATTA TTCAGATATTCCTGCATTGATATTACCATGTTTTCTTTCATTAAATACTGATTGCTTGTATGTTGTTCAGTTGGAAGAAG AGGAAGAAATCAGAAGGTTGAGGAGGGAACTTGTGCCAAAAGCACAGCCCATGCCATATTTTGATAGGCCTTTTATCCCA AGGAGGTAAGGGTTGATTTAGTCTCATTAATTATCAATGATTTATAGCATGTTTGGATTAACTTCTTTTTTCACACACAA GCTTTCCAGAATTGATTTTAGCTTAAGGATCAATTTACAAACATGAACATAAAAGTTGCTCATATTGGCAAATCTTGACT TCTCTTTAGAATGGTTCTCTCTCTCATATTAGCTTCTTTTTTTTGTATGCAAAAGGTCAATGAAGAATCCCACTATGCCT AGAACACCCAAGTTTCATAAGAAGATCAAGTGCAGCTCAGCATCGTGGAGTGATATGAGCACCTATTCTTTCCTGAATTA AGCTAGCTTCCAAAGATATTATTTTTTTGTGAATTGTGAAGTGAATAATGTTCTATAAATCCCCCTTTTTCCATTTCTGA ATAATCTCCAATTTTGTATGCTGGGCAACCAATTTAGTTGCATATTTTTCTCTTTTTGGTTTTGGTGTTTGTACAGTGTT TAAATGATTGGCGTTTGAGCAAATGATCTGATCTTCCAAAG

Download Genomic Sequence

CDS sequence (LotjaGi1g1v0509900.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCCACCGCCCAGAACGCCGTCGCAGCAGCCGTGACTCCACGGCGGTGCCGATCCAAGATTCAAGAATTGCCCAAACA CGCTGAGAATCTCAACCCTAATGTTCTCCAACAACAACAACAACAAAGCCCAGGTTGTAGAAAACCATTGATCCCTAACT CTTCTTCTTCTGCTTCTTCAATTTCACCATCTTCTCCTTCTCCTTCTTCTTCCCCTGTTGTGAGCAAGTCTTGCTCTGTA ACTGCCAGCAAGTCTCAGAAGCCGAAGAACCCTGCTATCCCCATTTCCTCTTTTACCCCTCGGACCAAGATCCGTCAGAG GAAGTTCGTTGTGGCGAAGAAGACGCAGAAGGAGGAGGAACAGGAGAAAGAGAAGGAGCGTTCTGCAGGCGAAACGACGT CGTTTTGCAAGTGCAAGGAGAAGAAAGGGAGTGGCGGTGGAATCAGGGGTAAGTGCCTATGTGTGGCTTACCACAATCTG AGGAAGTCACAGGAAGAGTTCTTCAAGAATCGGTGTGATGGTGATGATGATGGTGGTGATGAAGATGAAGAAATTGAGTG TGTGGTTGAAACAGAGGAAATGGGAAATGGTGGTTTGGGTGAGACAGAGTGTGGAGGTTTGGCAATGAAACGCACGAGGG AGAGGTTGGTGAAGGCGGCAATGGAGAAGGAGAGTGGTCCTCAAAGTGGGGGGTCTGGGAAAGTGAAGAATTTGGTGCAG GCTTTTGAGAAGCTTCTTCTGGCTGGACCCATTTCCAAGGATGAAGGAGATCATAAGGAGAAGGAAGAGGAGGAGGAGGA GAAGGAACCTCAACAGAATGATCACAAGGTGATGAAATGGCCACCGACAAATTTGACTTTGACATCCCAAAACCTTGGTT TGGATCCACGTGATTCTGTTTCTTCTTCTTGGGATAGCGGTAGAGGAAGTTTGTCTAGGAGGACATCCAATGGGGGAAGA AGCAGCAGGAGAAATAGCTTGGAATCATCAAGCACTTTTGGGGGAAGGAGGTGGAAAAAGAAGCAGCAGAAAATCACCAA TCCAAGGCCATTCAAGTTAAGAACTGAGCAAAGGGGAATGTTAAAAGAGGAAGAATTTGTAAAGAAGGTACAAGAGATGA TGACTGAAGAAGAGAAGCAGAGGGTACCAGTGGCTCAGGGTCTTCCTTGGACAACTGATGAACCTGAGTGCTTGGTAAAA CCTCCAGTGAAGGAAATTACTATACCGGTTGACTTGAAGCTTCATAGTGATGTGCGAGCAGTGGATCGCGCTGAGTTTGA CAATCAGGTAGCAGAAAAGTTGAGCCTAATGGAGCAATACAAATTGGAGAAAGAGAGACAACAAAAGTTGGAAGAAGAGG AAGAAATCAGAAGGTTGAGGAGGGAACTTGTGCCAAAAGCACAGCCCATGCCATATTTTGATAGGCCTTTTATCCCAAGG AGGTCAATGAAGAATCCCACTATGCCTAGAACACCCAAGTTTCATAAGAAGATCAAGTGCAGCTCAGCATCGTGGAGTGA TATGAGCACCTATTCTTTCCTGAATTAA

Download CDS Sequence

Protein sequence (LotjaGi1g1v0509900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MATAQNAVAAAVTPRRCRSKIQELPKHAENLNPNVLQQQQQQSPGCRKPLIPNSSSSASSISPSSPSPSSSPVVSKSCSV TASKSQKPKNPAIPISSFTPRTKIRQRKFVVAKKTQKEEEQEKEKERSAGETTSFCKCKEKKGSGGGIRGKCLCVAYHNL RKSQEEFFKNRCDGDDDGGDEDEEIECVVETEEMGNGGLGETECGGLAMKRTRERLVKAAMEKESGPQSGGSGKVKNLVQ AFEKLLLAGPISKDEGDHKEKEEEEEEKEPQQNDHKVMKWPPTNLTLTSQNLGLDPRDSVSSSWDSGRGSLSRRTSNGGR SSRRNSLESSSTFGGRRWKKKQQKITNPRPFKLRTEQRGMLKEEEFVKKVQEMMTEEEKQRVPVAQGLPWTTDEPECLVK PPVKEITIPVDLKLHSDVRAVDRAEFDNQVAEKLSLMEQYKLEKERQQKLEEEEEIRRLRRELVPKAQPMPYFDRPFIPR RSMKNPTMPRTPKFHKKIKCSSASWSDMSTYSFLN

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR14326 View details on PTHR14326 Search for proteins/transripts with this domain View external data on PTHR14326	12	501	490	2.8E-161	IPR009675 Show description in modal box View details on IPR009675 Search for proteins/transripts with this domain View on EBI InterPro Service
PANTHER	PTHR14326:SF20 View details on PTHR14326:SF20 Search for proteins/transripts with this domain View external data on PTHR14326:SF20	12	501	490	2.8E-161	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	24	133	110	-	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	31	103	73	-	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	111	133	23	-	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	247	357	111	-	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	250	275	26	-	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	277	333	57	-	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	374	396	23	-	–
Pfam	PF06886 View details on PF06886 Search for proteins/transripts with this domain View external data on PF06886	414	470	57	2.7E-20	IPR027329 Show description in modal box View details on IPR027329 Search for proteins/transripts with this domain View on EBI InterPro Service
Coils	Coil View details on Coil Search for proteins/transripts with this domain	433	462	30	-	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	471	495	25	-	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0005819 View details of GO:0005819 AmiGO InterPro QuickGO	Cellular component	Spindle	The array of microtubules and associated molecules that forms between opposite poles of a eukaryotic cell during mitosis or meiosis and serves to move the duplicated chromosomes apart.	Subterm of View details of GO:0043232 View details of GO:0044430 Part of View details of GO:0015630
GO:0005874 View details of GO:0005874 AmiGO InterPro QuickGO	Cellular component	Microtubule	Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle.	Subterm of View details of GO:0099513 Part of View details of GO:0015630
GO:0032147 View details of GO:0032147 AmiGO InterPro QuickGO	Biological process	Activation of protein kinase activity	Any process that initiates the activity of an inactive protein kinase.	Subterm of View details of GO:0045860
GO:0060236 View details of GO:0060236 AmiGO InterPro QuickGO	Biological process	Regulation of mitotic spindle organization	Any process that modulates the rate, frequency or extent of the assembly, arrangement of constituent parts, or disassembly of the microtubule spindle during a mitotic cell cycle.	Subterm of View details of GO:0007346 View details of GO:0090224 Regulates View details of GO:0007052

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0509900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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LotjaGi1g1v0509900.1