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LotjaGi1g1v0509900.1

Overview

Field Value
Gene ID LotjaGi1g1v0509900
Transcript ID LotjaGi1g1v0509900.1
Lotus japonicus genome version Gifu v1.2
Description TPX2 (Targeting protein for Xklp2) family protein; TAIR: AT5G15510.1 TPX2 (targeting protein for Xklp2) protein family; Swiss-Prot: sp|F4I2H7|TPX2_ARATH Protein TPX2; TrEMBL-Plants: tr|I1KWD0|I1KWD0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0509900
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:102873183..102876103) extracted from Lotus japonicus Gifu genome v1.2.

GTTATTAAGAAAATACATAGAAACAGAGTTAAAAATAAAAAATCAATGATCCAATTGAGCCCCAGCAAAACTAGCCGTTA CGCACAGAGCCTCAGTTTAACGTTCCAATTTTCCTCCTCTTTCTCTCAAATCCCTAAATTTTCTTCCTCATCGCAAAAAC TTCACTACTCTTTCTCTTTACCGATTGCAGAATCACACGATTTTCTCCGACGAACATGGCCACCGCCCAGAACGCCGTCG CAGCAGCCGTGACTCCACGGCGGTGCCGATCCAAGATTCAAGAATTGCCCAAACACGCTGAGAATCTCAACCCTAATGTT CTCCAACAACAACAACAACAAAGCCCAGGTTGTAGAAAACCATTGATCCCTAACTCTTCTTCTTCTGCTTCTTCAATTTC ACCATCTTCTCCTTCTCCTTCTTCTTCCCCTGTTGTGAGCAAGTCTTGCTCTGTAACTGCCAGCAAGTCTCAGAAGCCGA AGAACCCTGCTATCCCCATTTCCTCTTTTACCCCTCGGACCAAGATCCGTCAGAGGAAGTTCGTTGTGGCGAAGAAGACG CAGAAGGAGGAGGAACAGGAGAAAGAGAAGGAGCGTTCTGCAGGCGAAACGACGTCGTTTTGCAAGTGCAAGGAGAAGAA AGGGAGTGGCGGTGGAATCAGGGGTAAGTGCCTATGTGTGGCTTACCACAATCTGAGGAAGTCACAGGAAGAGTTCTTCA AGAATCGGTGTGATGGTGATGATGATGGTGGTGATGAAGATGAAGAAATTGAGTGTGTGGTTGAAACAGAGGAAATGGGA AATGGTGGTTTGGGTGAGACAGAGTGTGGAGGTTTGGCAATGAAACGCACGAGGGAGAGGTTGGTGAAGGCGGCAATGGA GAAGGAGAGTGGTCCTCAAAGTGGGGGGTCTGGGAAAGTGAAGAATTTGGTGCAGGCTTTTGAGAAGCTTCTTCTGGCTG GACCCATTTCCAAGGATGAAGGAGATCATAAGGAGAAGGAAGAGGAGGAGGAGGAGAAGGAACCTCAACAGAATGATCAC AAGGTGATGAAATGGCCACCGACAAATTTGACTTTGACATCCCAAAACCTTGGTTTGGATCCACGTGATTCTGTTTCTTC TTCTTGGGATAGCGGTAGAGGAAGGTATGATTCTACTCAATGCTTGTTTGGTTTTGATTATAAGCTGATTTGAGCAAAAG CTATGTGTTAATTTAAGTGCTATTTTAAGTGTTGTTGTTGATGTTTGTTATCTTTCTACAAGCTGCAGTTTGTCTAGGAG GACATCCAATGGGGGAAGAAGCAGCAGGAGAAATGTAAGACTTGAGTCTAAGTTACTTTTTTGCATGATGATTTGTGATT CATTCATCAACCAGAGTTGTGAGTTTTGTAATTGAATCAATTTCAGAGCTTGGAATCATCAAGCACTTTTGGGGGAAGGA GGTGGAAAAAGAAGCAGCAGAAAATCACCAATCCAAGGCCATTCAAGTTAAGAACTGAGGTAATTGCTTGGAATTAATTG ACATCATATAAGTTCACTTATTAATGTTGTTCTTGTTGTTTTCCAAAGACTTTGAATGATAACATTTTTAATGGAATGCT TACAGCAAAGGGGAATGTTAAAAGAGGAAGAATTTGTAAAGAAGGTACAAGAGATGATGACTGAAGAAGAGAAGCAGAGG GTACCAGTGGCTCAGGGTCTTCCTTGGACAACTGATGAACCTGAGGTAAGGTTATTTTGCTAAGAAATGAAGTACTTTGT CTGAGTTCTGTTTGACTATGTTGTGGTCCGGAACACTAAATTGGAAGAAAGCACTATATGTCTTATGTTTGCAAAATTGC AAATGCTAAAATGACTTCCTTTATATTCTTGGTTGCCTGCTATTTCAGTGCTTGGTAAAACCTCCAGTGAAGGAAATTAC TATACCGGTTGACTTGAAGCTTCATAGTGATGTGCGAGCAGTGGATCGCGCTGAGTTTGACAATCAGGTGCTGCCTCCTT CATCTCTTATACTTATCTTTTATAATGCTCTGGATAATTTAGTTCTAGGGATAATTTTAATTCCTTGTCATAGACGTGTC AATAATTTAGAATTTTCATTTGTGGAAGATGTGAAAGTAAATGGAATCAAGATTTGATTGAATGTTGAATTATGCAGGTA GCAGAAAAGTTGAGCCTAATGGAGCAATACAAATTGGAGAAAGAGAGACAACAAAAGGTGCACTATTATTGTTATTATTA TTCAGATATTCCTGCATTGATATTACCATGTTTTCTTTCATTAAATACTGATTGCTTGTATGTTGTTCAGTTGGAAGAAG AGGAAGAAATCAGAAGGTTGAGGAGGGAACTTGTGCCAAAAGCACAGCCCATGCCATATTTTGATAGGCCTTTTATCCCA AGGAGGTAAGGGTTGATTTAGTCTCATTAATTATCAATGATTTATAGCATGTTTGGATTAACTTCTTTTTTCACACACAA GCTTTCCAGAATTGATTTTAGCTTAAGGATCAATTTACAAACATGAACATAAAAGTTGCTCATATTGGCAAATCTTGACT TCTCTTTAGAATGGTTCTCTCTCTCATATTAGCTTCTTTTTTTTGTATGCAAAAGGTCAATGAAGAATCCCACTATGCCT AGAACACCCAAGTTTCATAAGAAGATCAAGTGCAGCTCAGCATCGTGGAGTGATATGAGCACCTATTCTTTCCTGAATTA AGCTAGCTTCCAAAGATATTATTTTTTTGTGAATTGTGAAGTGAATAATGTTCTATAAATCCCCCTTTTTCCATTTCTGA ATAATCTCCAATTTTGTATGCTGGGCAACCAATTTAGTTGCATATTTTTCTCTTTTTGGTTTTGGTGTTTGTACAGTGTT TAAATGATTGGCGTTTGAGCAAATGATCTGATCTTCCAAAG 

CDS sequence (LotjaGi1g1v0509900.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCCACCGCCCAGAACGCCGTCGCAGCAGCCGTGACTCCACGGCGGTGCCGATCCAAGATTCAAGAATTGCCCAAACA CGCTGAGAATCTCAACCCTAATGTTCTCCAACAACAACAACAACAAAGCCCAGGTTGTAGAAAACCATTGATCCCTAACT CTTCTTCTTCTGCTTCTTCAATTTCACCATCTTCTCCTTCTCCTTCTTCTTCCCCTGTTGTGAGCAAGTCTTGCTCTGTA ACTGCCAGCAAGTCTCAGAAGCCGAAGAACCCTGCTATCCCCATTTCCTCTTTTACCCCTCGGACCAAGATCCGTCAGAG GAAGTTCGTTGTGGCGAAGAAGACGCAGAAGGAGGAGGAACAGGAGAAAGAGAAGGAGCGTTCTGCAGGCGAAACGACGT CGTTTTGCAAGTGCAAGGAGAAGAAAGGGAGTGGCGGTGGAATCAGGGGTAAGTGCCTATGTGTGGCTTACCACAATCTG AGGAAGTCACAGGAAGAGTTCTTCAAGAATCGGTGTGATGGTGATGATGATGGTGGTGATGAAGATGAAGAAATTGAGTG TGTGGTTGAAACAGAGGAAATGGGAAATGGTGGTTTGGGTGAGACAGAGTGTGGAGGTTTGGCAATGAAACGCACGAGGG AGAGGTTGGTGAAGGCGGCAATGGAGAAGGAGAGTGGTCCTCAAAGTGGGGGGTCTGGGAAAGTGAAGAATTTGGTGCAG GCTTTTGAGAAGCTTCTTCTGGCTGGACCCATTTCCAAGGATGAAGGAGATCATAAGGAGAAGGAAGAGGAGGAGGAGGA GAAGGAACCTCAACAGAATGATCACAAGGTGATGAAATGGCCACCGACAAATTTGACTTTGACATCCCAAAACCTTGGTT TGGATCCACGTGATTCTGTTTCTTCTTCTTGGGATAGCGGTAGAGGAAGTTTGTCTAGGAGGACATCCAATGGGGGAAGA AGCAGCAGGAGAAATAGCTTGGAATCATCAAGCACTTTTGGGGGAAGGAGGTGGAAAAAGAAGCAGCAGAAAATCACCAA TCCAAGGCCATTCAAGTTAAGAACTGAGCAAAGGGGAATGTTAAAAGAGGAAGAATTTGTAAAGAAGGTACAAGAGATGA TGACTGAAGAAGAGAAGCAGAGGGTACCAGTGGCTCAGGGTCTTCCTTGGACAACTGATGAACCTGAGTGCTTGGTAAAA CCTCCAGTGAAGGAAATTACTATACCGGTTGACTTGAAGCTTCATAGTGATGTGCGAGCAGTGGATCGCGCTGAGTTTGA CAATCAGGTAGCAGAAAAGTTGAGCCTAATGGAGCAATACAAATTGGAGAAAGAGAGACAACAAAAGTTGGAAGAAGAGG AAGAAATCAGAAGGTTGAGGAGGGAACTTGTGCCAAAAGCACAGCCCATGCCATATTTTGATAGGCCTTTTATCCCAAGG AGGTCAATGAAGAATCCCACTATGCCTAGAACACCCAAGTTTCATAAGAAGATCAAGTGCAGCTCAGCATCGTGGAGTGA TATGAGCACCTATTCTTTCCTGAATTAA 

Protein sequence (LotjaGi1g1v0509900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MATAQNAVAAAVTPRRCRSKIQELPKHAENLNPNVLQQQQQQSPGCRKPLIPNSSSSASSISPSSPSPSSSPVVSKSCSV TASKSQKPKNPAIPISSFTPRTKIRQRKFVVAKKTQKEEEQEKEKERSAGETTSFCKCKEKKGSGGGIRGKCLCVAYHNL RKSQEEFFKNRCDGDDDGGDEDEEIECVVETEEMGNGGLGETECGGLAMKRTRERLVKAAMEKESGPQSGGSGKVKNLVQ AFEKLLLAGPISKDEGDHKEKEEEEEEKEPQQNDHKVMKWPPTNLTLTSQNLGLDPRDSVSSSWDSGRGSLSRRTSNGGR SSRRNSLESSSTFGGRRWKKKQQKITNPRPFKLRTEQRGMLKEEEFVKKVQEMMTEEEKQRVPVAQGLPWTTDEPECLVK PPVKEITIPVDLKLHSDVRAVDRAEFDNQVAEKLSLMEQYKLEKERQQKLEEEEEIRRLRRELVPKAQPMPYFDRPFIPR RSMKNPTMPRTPKFHKKIKCSSASWSDMSTYSFLN 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER 12 501 490 2.8E-161
PANTHER 12 501 490 2.8E-161
MobiDBLite 24 133 110 -
MobiDBLite 31 103 73 -
MobiDBLite 111 133 23 -
MobiDBLite 247 357 111 -
MobiDBLite 250 275 26 -
MobiDBLite 277 333 57 -
MobiDBLite 374 396 23 -
Pfam 414 470 57 2.7E-20
Coils 433 462 30 -
MobiDBLite 471 495 25 -

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Cellular component Spindle The array of microtubules and associated molecules that forms between opposite poles of a eukaryotic cell during mitosis or meiosis and serves to move the duplicated chromosomes apart.
Cellular component Microtubule Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle.
Biological process Activation of protein kinase activity Any process that initiates the activity of an inactive protein kinase.
Biological process Regulation of mitotic spindle organization Any process that modulates the rate, frequency or extent of the assembly, arrangement of constituent parts, or disassembly of the microtubule spindle during a mitotic cell cycle.

Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0509900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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