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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0510100 |
| Transcript ID | LotjaGi1g1v0510100.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Biotin carboxyl carrier acetyl-CoA carboxylase; TAIR: AT5G16390.2 chloroplastic acetylcoenzyme A carboxylase 1; Swiss-Prot: sp|Q42533|BCCP1_ARATH Biotin carboxyl carrier protein of acetyl-CoA carboxylase 1, chloroplastic; TrEMBL-Plants: tr|I3SZG2|I3SZG2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0510100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:102881143..102884879) extracted from Lotus japonicus Gifu genome v1.2.
AAGAAATCCAAGAGCAGTGACCAAAAAATGATGGTTCCAAGTTGGTTAACCTGTGTGACGTTGATGTTTGTTCTCATAGA TATCATCGAAGCCGTAGTGTAAAAACCAGAGTGTTGTGTTCCATCTTCGTTGTTTCCATCATCCATCATCCATCCCTAGC AGCTAGCACCACCTTCTCTTCATTCCCAACAACACTCTCATCATCGATCTCATCGCCCTTTCAAAACCCTTATATAACAC GCCTTACCGACTTCAACCCCCAACCCAGAAATCTCGGTTTTTCATTCGTGGGGTTGGTTCAGAATGGCGTCGTCTTTCAC TGTCCCTTGCCCCAAATGCCTCTCTTTTACCGGTTCTGGGTTGAACTCTCGGACCCCTCCGCCGCAGAACATGCAGATTC GGAGCGGGTTGGGGTTGAAGGAATCCGGGTCGTTTGGATCTTTGAGCCATGATTCAGCAGCACCAAATGGGATTCAGGTG TGTGGTTTTTGTCTAATGTGAATCTTGGTTTGAAATTTGAATCTGAATTGATAGTATTAGTACCACCATGTTGATTTCTT CTGATTTTGGATAGATGTCACTGGATGTGATGAATTGTTTTGAATGTGTGCTTGTATGCATGATGTTTGAGATGTTAATT GTGCACTAATTGTATGGTGAAAGTTCCAGAATGCTCAATTTGCCATTTCCCACTTGAAGGTTAGATAGTGATAGGGAGAA ATGTGATTCAAGTTTTTGGGCTGAGTATTTATAGTTTGAGCATATAATTTGATTAGTTATTGTATATGTTCTCATTTTAA CTATTATGTTATTTTCAGCATAAATTAGTAATACACACATCCCCTGCCAATGACTTTTCAGTGCTTAGTGTCCTTTACTT TTGTTGGGAAAAAATACAAAATTAAAAGGAAACCTTTTGTTCCTTGAAATCCTATTTAATTTGAAGATTTCGTGCGTGTT TGGATACACCAAGGTGAAGCTGAATTCATGATGGACGGCCACAAAAGCTAAGAGAAGTTGCTTTTGTCCACCGTGTATTC AACATGTTGAGAGTATTTATGTTATGGAATTTGGAATTGGGTTTACATTTCTAGTTCTAATATCGAGATTTATAGTTTTG AATTCCTGGTGATTTTTACACACAAATAATATGCTCTATAAAGAACTTCTGTATTTATTTGATTTCCTGAAATGGGGATG GCTCAAATTTTCGTCTTGTTATAGCCAGATGAATTGTGTTATTTTCATTGTATTTGGTGGATCTGTTACCGCTGGTGCAG CCCACGATCATGTAGCGTGTAGTTTTCAGCCGTCAGTCTATAACGTGCTTAAAACTGGAGAAGTCCATAGTTTATCCATT AAAACAATTTCAGTTTGTGAATTGTATTCTGATTCAGCGAGTACTAGTAATGAAGTTAAACTTTGTCAGACGCTTGGAAG TTGGAAGCTATATTTTCTTTCTGATAATTTTTATGATTCCATTGTTATTGTTGTGTCCTGCAGGCCCTTAACAGAAAACA ATATTCTGTCTGGAAGTTTCAAGCATTACCTAGTGAGGTTTGTTCACATTGAGTTTTACTCTGAACGAAAAAATGTCATC ATCTCTAATCTTGCTTTACAAATTATTTCTCCGTAAGATTAATTAACAATAACCATAATTACATGATTTGTATGTTTTAG GCTGCTACAGTTGGAAATTCTTCAAATTCTGCTCCTGTACTGGTCAAAGAACCTAAAGTCGCTTCACTAGAAGAGAAAGA TAATGGGAAACCCTCTGGTCCAAGCACTTCTACAGATGCATCTTCAATATCTGCTTTTATGAATCAAGTTTCAGACCTTG TTAAGTAAGGCTTGCACTCTGCCATGCTCTTGCGTGTTTGTTTTTTATTTTTAAATTGACATTAGGATATGAAACATTTT ATTCTTCAATATTAACATTGTTTCCTTTGGCAGACTTGTGGATTCTAAAGATATCGTGGAGCTGCAACTTAAGCAAGCGG ACTATGAGCTGATGATAAGAAAAAAGGAAGCTTTGCAGCCTCCACCAGCTACTTTTGTAGCTCCAGCATCACAGCCATAT CCCTATCCCGCACATGCTTCTCCGCAAGCACCACCACCACCACCACCTGCTGTTGCTTCTGCTCCTACAAAAGCAGCTCC TGCCCTTCCACCTGGAAAATCAAGCTCATCATCTCTTCCACAGTTGAAATGTCCAATGGCGGGAACCTTTTATCGGAGCC CAGCACCTGGTGAACCACCATTTGTCAAGGCATGTATCACTAGTACTGTATAACCATGTGTATTTTATATAGTTAACTTC TTTTGAGGTGTCTATTTTCCAATCATTTTACTAGGTATTAATGACTAATTATTCCATGTTTGTTGATGAAAATAATTGAT AGCCTCATTCTTTTGTTACTGTTTCAGGTGGGAGATAAAGTGCAGAAAGGGCAGGTTATTTGCATTATTGAGGCCATGAA ACTGATGAACGAAATTGAAGTATGTATCCATTTTATGCTGGTTTTGTATATCATTCTGCTTAACTTTCTCTTTTTACTGT TATTACTATTCCTATTACTATCTTGGTTTTTTTTCTTCTGTTCATTCTGGAGATATATCTCATACTATTTATATTACTAT TCTGGGCTTTAATGGGACAACATGAGAAAAAATTGGAGTAGCATAAATGAGAATGTTAAGATGGATGTGTGGCCACACTA GAAAGGATAGGAATAAGATACACAATAATTGTAAAGAGGTGATATTGGGGTGTTTCGTATCGATGAGAAGCTAATGGAAA ATCAGTTAAGGCATGTACAAAAAAGACCTTTGCAGGCACCTGTGAGAAGGGTTGATAACATAGTCTTTAGTTCCGTGAAG AGGGGCAGAGGAGGCCAAAAGAACATTGGAATATATTAAAAATGACCTCATTGACAAGACTTTTGTGGGATAAGACTTTT GTTTTCATTGTTGTCACAATTTAGATTATGGTCCCATATTGTAAAATACGTAAAGTGATAAATCCATATCAAAGTTTCTT AGTAAAGCAAACACAAACAAATCTATAAAAGCTGTATGCACAATGCACACTTTGTGTTTCCTACTTTCTCATTCTTTCAT TGCTTCCCAGGCTGATAAATCAGGAACAATAGCTGAGGTACTGGCGGAGGATGGGAAACCAGTCAGTGTCGACTCGGTAT GCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCAACTTTGACTCATTTCTCAAACTAAAATAC TTGTGCACCCTGCATGCAGCCTCTTTTTGCAATTGCACCATGAGTTCCAGAAGGTACCTTACTCCAAAGTTTGATGGAAA CCTCTGTTGGCTCAAGACTGATAATATCACTAGATTTTCATTATTCAGATATTTCTTGTGCAATAATGTTTGTCCCATTT TAGGAAAATCCTTCTCCCTATTTATTCAAGAGACATTCTAAGACATAAAAGCCACGGCATATCAGAAGGAATGTTGGAAT TTGTACTTCTAAACAGTTTTAATATTGTAGTCTCAAAAGATTTTTATACATTTGCTTTCTCAAGTGCCCATCATTCTCGT TGAGCACCCTGGCTGGTTTTACAAGAACTTGCTACAGCATGGTTTATTTGCAATAGAAGATTAATTACAATCAAAACAAC GTTAAGAAGTTTATATGAAGTAACCCCACAAAAGCTTTCGCTATTAGATGAAAGTAT
CDS sequence (LotjaGi1g1v0510100.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGTCGTCTTTCACTGTCCCTTGCCCCAAATGCCTCTCTTTTACCGGTTCTGGGTTGAACTCTCGGACCCCTCCGCC GCAGAACATGCAGATTCGGAGCGGGTTGGGGTTGAAGGAATCCGGGTCGTTTGGATCTTTGAGCCATGATTCAGCAGCAC CAAATGGGATTCAGGCCCTTAACAGAAAACAATATTCTGTCTGGAAGTTTCAAGCATTACCTAGTGAGGCTGCTACAGTT GGAAATTCTTCAAATTCTGCTCCTGTACTGGTCAAAGAACCTAAAGTCGCTTCACTAGAAGAGAAAGATAATGGGAAACC CTCTGGTCCAAGCACTTCTACAGATGCATCTTCAATATCTGCTTTTATGAATCAAGTTTCAGACCTTGTTAAACTTGTGG ATTCTAAAGATATCGTGGAGCTGCAACTTAAGCAAGCGGACTATGAGCTGATGATAAGAAAAAAGGAAGCTTTGCAGCCT CCACCAGCTACTTTTGTAGCTCCAGCATCACAGCCATATCCCTATCCCGCACATGCTTCTCCGCAAGCACCACCACCACC ACCACCTGCTGTTGCTTCTGCTCCTACAAAAGCAGCTCCTGCCCTTCCACCTGGAAAATCAAGCTCATCATCTCTTCCAC AGTTGAAATGTCCAATGGCGGGAACCTTTTATCGGAGCCCAGCACCTGGTGAACCACCATTTGTCAAGGCATGTATCACT AGTACTGTATAA
Protein sequence (LotjaGi1g1v0510100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASSFTVPCPKCLSFTGSGLNSRTPPPQNMQIRSGLGLKESGSFGSLSHDSAAPNGIQALNRKQYSVWKFQALPSEAATV GNSSNSAPVLVKEPKVASLEEKDNGKPSGPSTSTDASSISAFMNQVSDLVKLVDSKDIVELQLKQADYELMIRKKEALQP PPATFVAPASQPYPYPAHASPQAPPPPPPAVASAPTKAAPALPPGKSSSSSLPQLKCPMAGTFYRSPAPGEPPFVKACIT STV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 237 | 237 | 1.4E-96 | – | |
| PANTHER | 1 | 237 | 237 | 1.4E-96 | – | |
| MobiDBLite | 16 | 36 | 21 | - | – | |
| MobiDBLite | 16 | 37 | 22 | - | – | |
| MobiDBLite | 94 | 117 | 24 | - | – | |
| MobiDBLite | 162 | 213 | 52 | - | – | |
| MobiDBLite | 165 | 194 | 30 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0510100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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