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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0512400 |
| Transcript ID | LotjaGi1g1v0512400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RNA-binding protein; TAIR: AT5G61030.1 glycine-rich RNA-binding protein 3; Swiss-Prot: sp|Q9FNR1|RBG3_ARATH Glycine-rich RNA-binding protein 3, mitochondrial; TrEMBL-Plants: tr|A0A0B2SA33|A0A0B2SA33_GLYSO Glycine-rich RNA-binding protein 2, mitochondrial; Found in the gene: LotjaGi1g1v0512400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:103414539..103418410) extracted from Lotus japonicus Gifu genome v1.2.
ATTGCTGGTGCTGGCGGTTGAGGGAGGTGGTTGTGGTGGTAGTGGTAGTGGTAGTGGTAATGGTGGGTCACTGAGATATA TGTAGTGGTGGTAGCGACGACAATGGCGATGGAGGGTGGTGAAAGCGGCGACAGTGGTGGTGGAAGAGACTAGAGATAAA GGCACTGCAATCTTCTTTAAGAGGATTGATAAGTTAAAGTAGAGAAGAGAGTTTTTAGGGTTTCCAAGAGAGAACTTGGA GAGAGTTTTTTCTACACTCACAAACTCGAATTTAAATTACAAAGAAAATTGAAAATTGGAGCTTATACAGCCCATTTAGA GTGAAAGTCACGCAATCCTTCTAGTATATAAGTCAAGCCTAAATGAGTGTTAATCCTCTCATTTTCATGCATGTATCATC ACCTTCCTTCCCATTTTCCTCCCCCTACCTCTATGCCAACTCATGTAGAAGTGTAGAACACAAAAAACAAAACTCTCAAA ACACATTTTTTACCATAGAACAAAAAAGTGATTGTTGTAAAAAAAATGTGGAAAATAATTGATGTTGTTCCATCATCCCA TAATGGACACCATGTCAAGGGAAAATCAACAGCCAAGTCTGGGAATGTTGGGTTTCCTAAACATTAAGCAAATTTCCATG CAGTGATTGTGCCAAATGACTAAACAATGTGTACATATTTAGAGATAGATAGATCACTTGCATGTGGAAATTTCTAACAC CCTGAACATAGTTGCAGCTGTTCCTAGAAGTAGAAGGTGTTCAAAACCTTGTTTGGTCTTGACTTTATCATGTTTTTGGG TTCCAAAATTGGAATATATTTTTGGACCACATAGGCAGGCCCAAAAAAACTACATATTTTTCTCAGAAGAAATCCAAACA ACAAGAAATCTATATGGGCGGCATGCTCCAGGCTTCAAGCAGCAGCATCTGTACGGCACAGAAGCTGCCACGTGTAATTC CCATAGGTAAAAGTAAAACCCTATTATTTGTTTCAAGGGTTTATGCAGCTTCACAGTCTCAACTCACACACACACACACA GTGAAGAACCCTCGCTCTGTTATTCAAGGTTCGTAAGATCTCAAAATCAAAACTTCCTCCCAACCCATCATTTCTTTTTC CATGATGACTTCATTGTTGTTCCCTGTATTGCTTTTCTGTTTTTTGTTTTTATCATTTACTCGTTGATTGAGTTTCTACC ATTTGGCTATTTTGACCGTGGTGATGTTTGATACGGTGCAAGATTTTTTTTTACTGTCTGCACTCTGCAAGCCTTTGGTT TTGTTCAAAATGCATGTGGGGGTATTCGAATCAAAATGAACGAAATGAATTTAAAAAATTTCTTTGGAGTAATGTTTTAT GGATTCTTGGCTTATGGGCATTTTCAATTACAAATTTCTAGCATATTTACTGCAAATATGAGTTTGTGGTTATCATTACA ATTTAACAAGAAGCTTCATATAAGTATATGATTTTGATTGGGAATGATGGGCTGTCTTGCTTGTTATAATGCTTCTAAGA GCATATTTTTTTAATCCCACAAACTTGGTCTAGGTGGTTGAACACTTAAACCAAAACCCGTTAGTGGTTACTTATAATTC TTTATGTTGTGGATAATGTGTAATTAAATGTCAATCTCATCAGATCAGATCAGATTGCACTGATGATGCTTTTTAATTGA ATAGCTGGTGGAACTTTTGTACTTACAGAGCAAAAGTTGCAATGAACAATGGATCATATAAGTGATTTAACTATTTGCTG ACCGAAACATTTTTAGGTTTGAGCCATGGCGTTTATCGGTAAAATAGGAAAGCTACTCAAGAATTCTGCTGTCAAGCACA TCAGTCAGGATGTTTCTGTGTCTACTCCTTCGATGTTTCAAGCAATCAGATCCATGTCATCTGCCAAGGTTTTTGTTGGA GGTACGTTAAGTTTATCATGCTGAAGTTTTTTTCAAATTGGAAAACACTGACACTTTTCGAATTTCAATTGCTTTGCAGG TATTTCATACAGCACTGATGATACAAGTCTGCGAGAAGCTTTTTCTCGTTATGGAGAAGTTATTGAAGGTATTTTTCGTT CTAACTCACAGTCTTCTTGTTTTTCATTATTTCAGATATATAGGTAATGTCAAACCATAATAATTTTCAACCTCTAGATT TGTTTCTGAATTTTACCGTGAGCCAAAGCAAACCATTAAAATCTTCATCTTTGATGTAATTTTGCAGAGTGGCCATATTC TTTTGTTTTGATTAATGAAAACATTTTTATTAAAAATAACAGCTTCTTATTTATATTTGTATACTTATGCCATTCTTTCT TTTGTGGGTGACCTTTACTTTGTTAATTGATCATCTCTTTTGTTAGAATTAATTTACAATTGTTGTTAATCATAATATAG TTGATAAATTGTCCCTAGCTGTAACATGTGACAAACTGGCAAACAACAATCAAATGTCAAGCATATACACTTCATAATAT GGTGGTTACGTTCTACACTGAAACTGGTTATTTTTAATATTCTTCCAGCAAAGATTATCGTCGACCATGATTCGCAAAGG TCCAGAGGTTTTGGCTTTGTAACATATGCAACCAGTGAGGATGCATCTTCTGCCATTCAGGCCCTCGATGGCCAGGTATT ATCAGTTTTTAAAATTCACATGATGAGCATAATTTCAAATCCTTTTTAATGGAGTTAATTAGAGAGTTTTCATTACTTCA TATTATGTATGAAATAGTGAAACACCTTATGTACATAGCTGGAGTAAGCAATTGCTGTTATTTTGGCTTGAGGTTAGTAG AACCATTGAGTGCATATTCATGTGGCTGCTGTATTCTTGTCACCTGCATATAGTATTCTTGTAAGAAATGCTTTACGCTA AATAAAAGTTTGTTACATTTTTATTTATTTCAAGAGTCAGCTTAAAACTATGGATGTTAGGGAAAACCTTGCAAGTTCTT ATGAAGTGGAATTAGATTTTAAAACCAAGATTGGGCCTTTCAAAGACAGAGTTTAGTAAAATGTTTTCCCAATCTAACTT CTATTTTGTCTATTTAAATAAAGAAGGAATGAGGATACAGTTCTTCATGTTACAGAGCATCAATTAATTGTTGCTGAAGT TTCAATACAGTTTTGTCTGTAACATGTTGGTATTTGTTCTTGCAACATCTCAAATTATGTTGTGTCTCAGGATCTTCATG GTCGGAGAATACGGGTAAATTACGCTACTGAAAGGTCACGTCCAGGGTTTGGTGGAGGCGGCGGCGGCTATGGTGGCGGT GGCAGCTATGGTGGAGGCGGCAGCTATGGTGAAGGCGGAAGCTATGGTGGAGGCGGAAGCTATGGTGGTGGCGGCAGCTA TGGTGTTGGTAACAGCTATGGTGGTGGTGGTCGTGGTAACTACCAATTCAATGAAAATTCCGGTGGTGATCTTGGACCTG CTAGCGGTGAGCTCAGCAGCAACTCTGGTTTTGGATATGGTCAGTTTGGTGGCAACCAAAATGACACAACAGGTGCAGAC ATAGATGAATTCAATGTGAGTCAGAACAATGTTGAACCTAATGATGAGTATGCTCAAACCAGGTGAAGAGAGCATTTTGG TCATAAAGGATTTCCTTGCTAGAGCAAGTAACCTGTGGGTTTGATTATAACTGGATGTTTTTCTAGTATTTGATTGCATT TTGGTTGTTTGGCTTGAATTTGGTAGTTTGTCAGATCAACGACTGATGTAAAATAAGTTTTCTAGGAATTGAATAATTGC TACTTCATATAGAATGATTTTTTTTTCGACCATTTGACACCTAACAATAACATACATGTATGTTCAAAACTCTATTAGGT GTGTTTAGATGAACTTACTCAAGCGCTTATTT
CDS sequence (LotjaGi1g1v0512400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGTTTATCGGTAAAATAGGAAAGCTACTCAAGAATTCTGCTGTCAAGCACATCAGTCAGGATGTTTCTGTGTCTAC TCCTTCGATGTTTCAAGCAATCAGATCCATGTCATCTGCCAAGGTTTTTGTTGGAGGTATTTCATACAGCACTGATGATA CAAGTCTGCGAGAAGCTTTTTCTCGTTATGGAGAAGTTATTGAAGCAAAGATTATCGTCGACCATGATTCGCAAAGGTCC AGAGGTTTTGGCTTTGTAACATATGCAACCAGTGAGGATGCATCTTCTGCCATTCAGGCCCTCGATGGCCAGGATCTTCA TGGTCGGAGAATACGGGTAAATTACGCTACTGAAAGGTCACGTCCAGGGTTTGGTGGAGGCGGCGGCGGCTATGGTGGCG GTGGCAGCTATGGTGGAGGCGGCAGCTATGGTGAAGGCGGAAGCTATGGTGGAGGCGGAAGCTATGGTGGTGGCGGCAGC TATGGTGTTGGTAACAGCTATGGTGGTGGTGGTCGTGGTAACTACCAATTCAATGAAAATTCCGGTGGTGATCTTGGACC TGCTAGCGGTGAGCTCAGCAGCAACTCTGGTTTTGGATATGGTCAGTTTGGTGGCAACCAAAATGACACAACAGGTGCAG ACATAGATGAATTCAATGTGAGTCAGAACAATGTTGAACCTAATGATGAGTATGCTCAAACCAGGTGA
Protein sequence (LotjaGi1g1v0512400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAFIGKIGKLLKNSAVKHISQDVSVSTPSMFQAIRSMSSAKVFVGGISYSTDDTSLREAFSRYGEVIEAKIIVDHDSQRS RGFGFVTYATSEDASSAIQALDGQDLHGRRIRVNYATERSRPGFGGGGGGYGGGGSYGGGGSYGEGGSYGGGGSYGGGGS YGVGNSYGGGGRGNYQFNENSGGDLGPASGELSSNSGFGYGQFGGNQNDTTGADIDEFNVSQNNVEPNDEYAQTR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 12 | 137 | 126 | 1.4E-32 | ||
| PANTHER | 15 | 154 | 140 | 1.2E-56 | – | |
| PANTHER | 15 | 154 | 140 | 1.2E-56 | – | |
| SUPERFAMILY | 24 | 149 | 126 | 1.34E-36 | ||
| PRINTS | 36 | 52 | 17 | 7.3E-5 | – | |
| ProSiteProfiles | 40 | 118 | 79 | 21.668 | ||
| SMART | 41 | 114 | 74 | 3.9E-29 | ||
| Pfam | 42 | 112 | 71 | 2.5E-21 | ||
| PRINTS | 126 | 141 | 16 | 7.3E-5 | – | |
| PRINTS | 156 | 166 | 11 | 7.3E-5 | – | |
| MobiDBLite | 178 | 235 | 58 | - | – | |
| PRINTS | 182 | 200 | 19 | 7.3E-5 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi1g1v0512400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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