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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0517400 |
| Transcript ID | LotjaGi1g1v0517400.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | MADS-box transcription factor; TAIR: AT3G02310.1 K-box region and MADS-box transcription factor family protein; Swiss-Prot: sp|P29384|SEP2_ARATH Developmental protein SEPALLATA 2; TrEMBL-Plants: tr|V7B0R8|V7B0R8_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0517400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:104083526..104091635) extracted from Lotus japonicus Gifu genome v1.2.
ATGGGGAGAGGAAGAGTGGAGCTGAAGAGGATAGAGAACAAGATAAACAGGCAAGTTACATTTGCAAAGAGGAGAAATGG GCTTCTCAAGAAAGCTTATGAGCTTTCTGTTCTCTGTGATGCTGAGGTTGCTCTTATTGTCTTCTCCACTCGTGGCAAGC TTTATGAGTTTTGTAGCAGCTCTAGGTATGTATCAATTTCTATACATGCTCTCTCTTTTTTAATTGATTCTGAAATATAT TACTTTTCCTTAATTTGTTGAACTATATATGAGATCTACTTACTTTTTTTATTTTAATGTTTTTGTGTCTTTTCTTTGAT TTGTTTACTTCAACAATTAGATGAAAATCTTGGTTTCTAATTTTGATTTCTCATTTTTTATTTTCAATATTTTCCTTGAT AAATTATATCCCTTCTCTTATCATGTAAATTTGTGGTTAATTTGTATAATTAAGCTGAGTTTACGGTTCTCTTACTATGA GATAAAGTAATCAAAGTTGTGATTTGATTTGGTCTTTTGTGTGTAATGTTGTGAGTGAGGGTAGATTTAACAGATCTAGT AGTATGGTACATGATCTGATGATTATCTCCATGTGTTGTACTTGTACGGTTTCTTTTGTGAGATTATTGTTGACTAGCTT CAACTTTTGTCACTTTTTTCCTTGAAATCATGCTTTTGCTTAATAAACAAGATCAAGATTTGAATGTTCATAGGCCTAAG TTTGCTGCTGGTTTCTTCTTAATTGAGTGTTTTGCTATCCTAATTTTTGTTGGGATCAATGTTTTGTGTATGTCTTGAAA TGTTCTGGATCTCAGTCACTTCTGTGGTTCTATTAAATGGAAATTTCTATGAAGGAGAAGTGAGAATGCAGTGTTTTGCA CCAAAGATAAATAAGATTTCCAGTCCTTAGCTAAAATTAGTTTTTTTTTTTTTTTTTTGCATTTGGGGTGAATTAAATTA AAAGTGATTGATTTCAGCTAGCTACTTTGTAGCTGTGGGTTTTTGGTAGGAGGGGGGAGAATAGATGATGGAAGGGAGAT AATTATATTTATACAATGTATATCTAAGTGTATGCACAATTGTTGATTGATTATCATGTCATTTTGGTACTACACTACTA TCAAGCGAAAGCTATATTTCTAATTGGGGTTGTCTAGCAGCACTGATATTAAATTGTTGCCAATAAGCTGCGAGAATAGC AAATTCATAACAAATTGACTGTTAATTTGCGAGTAACTATTTTGCTGTTATTTGTTTAATTTATAAATCTTATTTTACAA TGCTATAAATCTTATGTTTACTAATTATGAGCGGTGTGACCCTAGATAAGGCCTTTCTAATTTTTTCATTTTTCATCCTC TTTAAAAAAAATTATAAAACGAGTACATACTTCATCTCATCACTTATTCTTTTTCATACCTTGAATCCTCAATACATTGA AATAATTTATAATCCTTTAATCTGTGAAAAGAAAAAGAAAAAAAATTGTACTTTTTAATTGTCTATTAAAGAAAAAAAAA ATCCCTCAAACTATCAAAAAACTTTCAAGTTCCTATTTTCTACTTTGTCATATTCTAATATAAATGCAATATTATTTTTC CTTTTTATAAAATTGTACTGAGAACGTTTTTGTTGTTTCCAACATGAAATTAAATAAATAATGGTTTCTATTATCATGTT CTTTATTATTTTCATTTATTTTAGACTTCAGTTGATTGTGCATATAATGACTGAATGAAAAAAACTTTCTATTGTAACAC TCTCACTTACTGATAGAGCGCCTTAACCAACTAGCAGTAGTACCTGCCTATTAACAGTATTAACAGAAACTAGCAGCCTT TTGAATTTATCGGCCTAATGGCTAATGAAAATACTATTTAATGAAATGACTTCTAAGAGCATCTCCAATGGAGTCCTTAT TTTGAGACCTTAAAATAAGATCCGGATCTTATTAGATTCCACCATTGGAGATGCTCTAACATCCTTCTAAGCTCCTTAAA TCAAATCTGCCTTTAAAGGTTTTTTAAGGATATCAGCTATTTGCAATTCTGTACAACAGTTAATAAGTTCCAACCTTGAT CTCTTAGAAAGTGAAATATAGTCCCAATGCATTTGCTTCTCCCATGTGCCACTGGATCCTTAGCAAAACTTCTAGCTGAT TTTTATCCACAAATGTGTGTACTGGTTTTCTACAGCTAATTTTCAACTCATCAAGCAATGATTCCAACCAACCAAAGTGT TTGACAAGCAGCATGAGAAGCTGCAACATACTCCGCTTCATATGAAGGGAGAGATACTAGATTTTGCTTCTTTGAACTCT ATGACATATATAGCTGAATTTAGAAACTTGAATAAGTAGCCACTTGTGCTCCTTCTATCTACCTTGTCACCGCACCAATC AGAATTAGAAAAACCAACCAACTCTATCAGATTCTGATTTGCTGGCTTTTGAAACATAATATCATGATCTAATGTTCCGT GCAAATACCTCAAGATTCTCTTAGCAGCCACAAAATGAGGATGCTTAGGATCATTCATAAACTGACTAATAATCCTAATT CACAACACCAACGAAAATGTCGGGTCTGCAACAAATGTATCTTATTGAGCCAACAACCTGTTTTAATAAAGTTCTTTCAC CTGCTTTCTCCCCTTCCTCCTTTTCAAGTCTTAGATTTGTTTCCACCGGGGTTATTGCTGAGTTGCAACCATAGCACCTC AATCACATACTTCTTTTGATGCAGCACAATACCAAGCTTTGTAGTCACAAATTCCATGCCAAGGAAAAGGCTTAGTGTTC CCAAGCTTGTCATATCAAATTCAGACCTCATATTCACCTTGAACTCCTCTATTTATTTGAGATCACTTCCGGTAACTAGC AGGTCATCAGCATATGGACATATAAATAACACTTCAGCAGCAGTTTTGATTCTGTCATGGACTCCATGCTCAATAGAACA TTTTGAAAAACCTTGCTGCTGAGTCAGAAAAGAGTCTTTTCTTTTGCTTCAGGCTCGAGTGACTTGCTTCAAGCCATATA GAGCCTTTCTCAGCTTGTAGGACTTTTCTTTTTTCCATTTGATCTCAAACGTAGATGGTTGGGTCACATACCTCTTCTTC TTCCAATGGGGCATTCAGAAATGCTGACTTCACATCCAATTTGAATAGTGATCATCCCCTTCCACTTGCAAAAGCAATCA CCACTCTGATGGTTTCAATTCTGGCCACCAGTGAAAATACATCTGTAAAATCTAAGCCAGCTCTTGGAAGAAACCCTTTA GCTACCAATCTTGCTTTGTGCTTGGCAACTGATCTTTATGGTCTCAATTTCAGCTTATAGACCCACTTCAGATCAATTCG TTGCTTGTTAAAAGGAAACTTAACTAGTTCCCAAGTCTGATTGGGCTCTATGAATTTCATTTCCCCCCTCATGGCTTCTC TCCAAATCTCATCCTTCATTGCATGCACAAAATCAATTGGCTCGGCATCAGCCAATAGAGCAAAATGAGATAGATCTCCT TCTTGTGAAATTATCCCAGTACCAGAAAATAGTTTATAGTCCGCATACCTAGTTATCATTTGTCTTACTTTGTGTCATGA GAATTTACAAACTGATGATTTGAAACTGGGGATCATGATATTTCCTTTGATGCATAACCGATTAGCCACTTCTTTCTTCC TTATAAAATATTGCATATATCTTCTTCTAGTCTAATGCAATTGTTTAGGGTGTTGCATGTCCAGCTACACAGAATAATTA GATGAAGTGGTCACTTTCTCCTTCACTTCCTCCTTAAATTACTTAGGCTATGTTTGAGTGCTGGTTAGTATCAATGTAAA CACATTAACACTTACTTTAAGATAAAAGTGAACAAAACTTTCTTATTGAATTGAGATGAAAGTTCACTCACATTACATCA ACACTCAATTGTATTCAAACACACACTTAAGTTTGTAAAATTGGATTTGGTTGAAAGTGAAAAATTGTAACATGGTTTAT GTTTTGGATACTTTTATCAAAGGGACTTGAAAAGAATAGCATAATAGATGTACTGCAAAGAGATCCTATGATCCCAGACC ATGATGTTGGTTTCCCACTCAGCATTTATTCTTTGTGTGGCTGAACACTACAACTCACTTGCCCCATTGTTAACTATTGC CTCCATTGTAGTTTTAAGTAACTTCTACATTGTTATGAGTTTCAAAAAAAAAAAAAAACTTCTACATTGTTATAAATGAA TTTAATTTTTCTGCGCCAGGAATATTTTCTGAAACTTGTTTATTTTTCTTTTTTTAGTCAACGCTTGGTATAATTGAATG ATCAAGTGGGTGTATCACATAAAATTGCTGAGTTGGTATCATTAAACCATTATTTCTACATGGAATGCAATTTTGCTGCT ATGAAATGAAAGTGCATAAGGGTACCACAAAAATGGCACAAAAATACAAGATATTGTTCATTTGTTTTTTTACATCCTTT TAATGACTAGTATGGATAGTAGTTATTCATGTACCGTCATTATTTTGAAAGTTTTTCGCATGCACTTTCTCTTACATAGA TAGTAGTTATTTTATATCTCTCTCTTTTGCTATAAGACCCCTCATTATATCTCATTACTCTGGGTGTGTGGGGAAATTTT GTGGCGAAACTTGACTATAAAATATATGGAAGAGCCGAAATGTGTTAAGAATTTTTTCTAACAAACCAAATGTTGGCCAC TCAAGATGATTTATGATTTATAAAATATCTCACTGCTCCTGCTTTTATGATTTATAGTATGATTTCTAGTATCATAAAAG TAGGAGTAGTACTATTAGTATTAGTAGAGTGATTGAAATAGTCATTGGTTATGGACTTGAAAAAGTAAATGGGTAAAAGT TAAATATATGAGAAAATTAAGGTGGTACACACTATTGGCCACATGAATGGTGTGATGTGACACTGTTTTAACATAGTTAA TCATCAAAAATTGGTGTACAAATTATATTATTATATATATTAGGAGTTCAATTGTTTTTGAGTTATGATTCAATCATATT ATATTATATATCACATCTATATCTTATTCTTTTTCTATTCCTATCTCATTTTAGGAATCTACATCCTTTGGTACCCACCA AACATTTTCCACAGTTTTTTGTATTTTAAAAAAATCGGGGGGATGGCCCCCTATGTCTCCATTATGATCCGCCAGTGGTG GAATTGTAGTATGAATGTAATATTTTCCTCTTTTAATTTGATGCCATTTCCTTTTTTTTCTTCCTCTTAAATCAGCATGG TCAAGACACTTGAAAGGTACCAGAAGTGCAGTTATGGTGCTGTGGAAGTTAACAAACCAGCCAAAGAACTTGAGGTAGTA GCAGCTCCTGCTATTTATATCTAACTTACAAAAGTTCATTTTGGAAAAATTCCACATATAGTTTTTTATTGTCATATCTC TTGTTTTTCATTTGTCATTTTCTTGGAAGCAGAGCAGCTACCGTGAATACTTAAAGCTGAAAGGAAGATTTGAATCTCTG CAAAGAACCCAGAGGTGATTTTAACAGAAAATTATTTATAACAGTGTACTCACTAGAAACCAATTATAATTCTTACCTTC TATGTTCATATCATGCATGTTCAAGTGTGAGAAAAGCTACTAGTTCCAAGTCACCAAATATAATTTATATTTTTCATAAA TAGTTTGCCAGCAAGAATTTTCATATCATGCTGGAATGAGCAAGGGTATGTTTTTGGCTGTTTTTCCAAACACATTAGTC CATGTTGGGCTTATGAAGTTGAAGTATCAGCAATTTTACATGCCCTTCTGTTTTGTGTTGAATACAATCTTATAGATGTG TAGTTATTGAAAGTGACTCATCATTAACGATTGGTTGAGTGAATAGCTTTGCAATCAGAACAGGCCTTGGAAAGTCCAAA CTATGTTGAATTTAATTGATTGGTTGCGCGTGGAAGTGGTGTTTCGAGATAAACCACATTGTTTGAGAAAATTTATTGCA GATGCTTTAGCTAAACAATTGGTTGCGATTTGTGGTCTAATTTTGACTGAATTTTATGTTATGTTTCTTCTGTAATCTTC CTCTTGTGGAGGATGTTCTGAAGTCTATAAAATTTCTCTTTTGCTTTAAAAGAAAAAAAATTAATTGTTAATGACCATTG TATTTGTGCATGCTACTGAAGAAACCTTCTAGGGGAGGACTTGGGCCCGCTTAATAGCAAAGATCTTGAGCAGCTTGAAC GGCAATTGGACTCATCTCTGAAGCAAGTGAGGTCCACAAAGGTATAGGTGTATTTATGAGTAAAGAAACCTGTTAATTTT TCAGTAACTTGATTAGTTGTTGATGCAGCTTTTTATATTTTCTCCATTTGATTTCACATTTTTATCATAATATTTCTGTA AATATGTTTTGGTTTGGCAAATAATATAACCAATGCATCATTTTCTATATGATAAAGGCATACTATGACATGATGGCACA AAAATATTGTATCATGTCATAGACTCAAACAGTCATAAAATAGAAGAGCAGGCTTTAGTCTTCATTGAAGATTGACATTT TTAGATTTGAAGAAAATGTAGAGGAAAGAAATTACTAGTCCTTTTTTGCTTAATGATTCAAAATAATCTATTGTGCCTAT ATACTTTTACTTTTACGCTCTGAAATTTCCTTAAGAGAAGCTTATTGTAACTCCTTGTTTGGAATATCAATTTGCAGACA CAATTCATGCTGGACCAGTTGTCTGATCTTCAAAATAAGGTACATAGTTTTGACTAAAGGAATAAAGCAATTTTATGGTT GCCTAATAATTTCAAGCTTATTGTTTCATTACAGGAGCAGATGTTGGTAGAAGCAAACAGATCCTTGTCAGTGAAGGTAG CATTATACCATTATGGACAATGTTCTTCCCATAACTAGCAAGTTTGGTTTTGTTACATGCTTCTTTCTTAATGCATAAAT AAATAAAAGCTACACCTCAGCCTTAACATTCTAGCTAATTGCGCCAACTTGTTCAGCTTAGATATTTTAATGAGTATGCT TTAAATTAATTTAGGAGTACAACCCTGCATCTCCATTCCTGGCCTATTAGATTGTATCCCTGGAGGTTAAGATTTTCTTC AAACTAGGCCTTGGATTGTTTAAGATAGTGAAAGTGAAACAAAATAAATAGAACCTTCTGTAAGGACCCAATTGCAAGGT ATGTGAGAGTCCACATTGAAAGTATGAGATTCTAATATGGGGTTTATAAGGCCTTGGGCTGTCCAACCACAAATGGTTCT CCCAAGATTCTTATCAAAACCTTAAGATAGAAATAGCTATGTCCAGCTCTGCGTACAATTGACTTGGCTACTGGGTTAAG TTGATTGATTGGCTTCAAGCTTTGATTCCTTAGATCGGCAGGGCAAGGGACTCAAGCGCTTAAGGGTTAAGTCAGTTTAG GATTGGGCAGAGAAACAGAAAATAGAAAGTGTGCATACCAAAATTGTGATTGATGACCTTTATAAGTAAGGTTTGTTGCC TTGATGTTGCTTCCCTCAATCTGGATTTTCTGAGTCTGAGATATCTGGGGAGTGATTTTAGCCTATGAGATTCTTATCTC TCGATTTAGGATGGTATTCATTGTGTTTGGTCCAAGCCGGCCGAGATCACGCTTATCTGCAAGGCTTGGACCACGAATCC AGTCCATAACAGAAACATTAGATATCATCAATCTTAATAGTCATTTCACACTATGGTCTTGACTAATATTTGTTGGCATG CAGCTGGATGATATCAATTCAAGAAATCACTACAGGCAATCATGGGATCAAGCTGGTGATCAAAGCATGCAGTATGGTGG TTCACAAAATGCTCACTCTCAGGGCTTCTTCCAGCCATTGGAATGCAACCCCACATTGCAGATTGGGTAATAACATACCA TCACTTGCTTGATTATGTTCTGTTCATACTCCAGTTGATTAATTTTAATTTGAATGAGGATTCAATTAACATGTCCCTTT TTTTAAAATTCAGTTCTGACTATAGGTACAATGGTGTGGCTTCAGATCAGATGGCTGCAACAACTCAAGCTCAACAAGTG AATGGGTTTATTCCTGGATGGATGCTTTGA
CDS sequence (LotjaGi1g1v0517400.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGGAGAGGAAGAGTGGAGCTGAAGAGGATAGAGAACAAGATAAACAGGCAAGTTACATTTGCAAAGAGGAGAAATGG GCTTCTCAAGAAAGCTTATGAGCTTTCTGTTCTCTGTGATGCTGAGGTTGCTCTTATTGTCTTCTCCACTCGTGGCAAGC TTTATGAGTTTTGTAGCAGCTCTAGCATGGTCAAGACACTTGAAAGGTACCAGAAGTGCAGTTATGGTGCTGTGGAAGTT AACAAACCAGCCAAAGAACTTGAGAGCAGCTACCGTGAATACTTAAAGCTGAAAGGAAGATTTGAATCTCTGCAAAGAAC CCAGAGAAACCTTCTAGGGGAGGACTTGGGCCCGCTTAATAGCAAAGATCTTGAGCAGCTTGAACGGCAATTGGACTCAT CTCTGAAGCAAGTGAGGTCCACAAAGACACAATTCATGCTGGACCAGTTGTCTGATCTTCAAAATAAGGAGCAGATGTTG GTAGAAGCAAACAGATCCTTGTCAGTGAAGGTACTGGATGATATCAATTCAAGAAATCACTACAGGCAATCATGGGATCA AGCTGGTGATCAAAGCATGCAGTATGGTGGTTCACAAAATGCTCACTCTCAGGGCTTCTTCCAGCCATTGGAATGCAACC CCACATTGCAGATTGGTTCTGACTATAGGTACAATGGTGTGGCTTCAGATCAGATGGCTGCAACAACTCAAGCTCAACAA GTGAATGGGTTTATTCCTGGATGGATGCTTTGA
Protein sequence (LotjaGi1g1v0517400.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIVFSTRGKLYEFCSSSSMVKTLERYQKCSYGAVEV NKPAKELESSYREYLKLKGRFESLQRTQRNLLGEDLGPLNSKDLEQLERQLDSSLKQVRSTKTQFMLDQLSDLQNKEQML VEANRSLSVKVLDDINSRNHYRQSWDQAGDQSMQYGGSQNAHSQGFFQPLECNPTLQIGSDYRYNGVASDQMAATTQAQQ VNGFIPGWML
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SMART | 1 | 60 | 60 | 4.9E-41 | ||
| ProSiteProfiles | 1 | 61 | 61 | 33.361 | ||
| PANTHER | 2 | 203 | 202 | 1.1E-100 | – | |
| PANTHER | 2 | 203 | 202 | 1.1E-100 | – | |
| SUPERFAMILY | 2 | 78 | 77 | 1.06E-33 | ||
| CDD | 2 | 76 | 75 | 4.68344E-46 | ||
| PRINTS | 3 | 23 | 21 | 1.3E-32 | ||
| ProSitePatterns | 3 | 57 | 55 | - | ||
| Pfam | 10 | 57 | 48 | 4.5E-26 | ||
| Gene3D | 13 | 76 | 64 | 5.7E-29 | ||
| PRINTS | 23 | 38 | 16 | 1.3E-32 | ||
| PRINTS | 38 | 59 | 22 | 1.3E-32 | ||
| Pfam | 85 | 170 | 86 | 3.4E-27 | ||
| ProSiteProfiles | 87 | 178 | 92 | 14.459 | ||
| Coils | 124 | 144 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | RNA polymerase II regulatory region sequence-specific DNA binding | Interacting selectively and non-covalently with a specific sequence of DNA that is part of a regulatory region that controls the transcription of a gene or cistron by RNA polymerase II. | ||
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Biological process | Positive regulation of transcription by RNA polymerase II | Any process that activates or increases the frequency, rate or extent of transcription from an RNA polymerase II promoter. | ||
| Molecular function | Protein dimerization activity | The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. |
Expression pattern of LotjaGi1g1v0517400.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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