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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0520400 |
| Transcript ID | LotjaGi1g1v0520400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box protein interaction domain protein; TAIR: AT4G22390.1 F-box associated ubiquitination effector family protein; Swiss-Prot: sp|Q9SUY0|FB244_ARATH F-box protein At4g22390; TrEMBL-Plants: tr|A0A0L9U1U4|A0A0L9U1U4_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0520400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:104430168..104432549) extracted from Lotus japonicus Gifu genome v1.2.
CCCTCTCACCCCTTCTCTCTTTTCTCTACTGAAGCTTTGCAGCAGCATGGAGAAGAAAGAAACAGAGAAGGAGAAGAAGA AACCCAACTTCAACCTCACCGAGTTGATTCCTGAAATGATTGATCTTTCTTTTGATCATGAGAACAAGAAGACGATGATC AACGACAAAGAGAACCAGAACACAGTTGATCTCCTTGAGGATTTGATTCCACTGATTCTGGTGAGGTTACCTGTTCGATC TCTCCTCCGCTTCAAATCGGTGTGTAAGTCGTGGCTGTCTCTGATTTCAAATACCCAATTCGCAAAATCACATTTTGATC TAGCTGCTGCACCCACTCACCGTTTTCTTCTCAAAATAATCAATGGTGGTTATGAAATTCAATCATGGGATTTTGAAGCA TCGCTTCGCGACGATTCTGCTGTGGTAAACCTCAAATTCCCACCCTACAATGCCCCCTTTTTTCTGCCTTTAGGTTCTTG CAGAGGTATTATTCTGTTAGTAAAAATGATGGGTCCATCATCTGGTGATCTCATTGTGTGGAACCCTTCAAATAGTTTCC ATAGAGAAATTCAAGCAACATATGGCTATGATGATTGGGATTCATGGTATGACACATCATCAACCCGTGTCCGCCAAGGA ATTCCATGTTATGTTGGTTATTTTTTCACTGGTTTTGTGTATGGTTTTGGATATGATCATTCCGAAGATGACTATTTGCT TGTTTTATTACGATTTCATAGACATGGTGAACCTTAAGTTATTACATTTTTGCGGCCTCAGATTGAGGTTTTGTCTGTCA AAACCAATGTGCCCTCCTTCATTTATGGCGAAGAGTTGGAATATGTGGAGCTTGGAGGTGAGTCCTCATGTGGTTTGTTC TTGAATCAGTCCCTGCATTGGTTGGTCATGTCCAAGGCTACAGGGCTTCATGTAATCATTGCCTTTGATTTGGTTGAGAG GAGTTTATCGGAGATTCCTTTGACACCTGATTTGGCACAGGAATTGGCAACACTTGAAAATTATTATTTGAAGGTACTAG GAGGATGTCTTGGTATGTGTTATAATGGTGTTCGTGATGAATATGAAATGACTGGAATATGGGTCATGAAAGAGTATAGA GTGCAGTCTTCTTGGACTAGATCTTTTGTTCTGCCTAAGTATGACTTTTTACCAATATGCTTCACTGAAGGTGGTGGTGT TTTTGGATCAGATAGCAATGAAAGATATGAGAAATTTGATGATAACAGAGAACTGCTGGAGGATCACACATATGGACAAG AGAACGAAGATATTTTTGAGTATTCTGAAATGTGCAGGGAGACCATACTAACACTCCCTAGTGAACTACCATGACCTTGA GGAAGCACATGAAGATAATTGTAAGTACCTAGAAACAAGGAAAATTAGTAAGCAATGTTCTCCAACCCTTTTTTATTTCT TTGTTCTAGTTCATCTTGCATTATGAAAAACTAAAAGCTATATGCAGAATACCTAATACATGAAAATGATACCTTAAACC TATTGTTGTTCTCTCCCTTTCTAAAGAATATTTCCTTTTTGTTAAAAAATGATAATTGAAATTGCAAGGAAAGATGAGAT TTGGTGTTGGATTGAATTCACTGAAAAATATTTGATGCATTGACTACTAGAAACATTAAAGGCTATTTGCCATATGAACT CATGTTTCTCACAAGCCACAAAGTAGCTAGCATATTTTATACATTATCCTTGATGTCATACTCCTAGTTTTTCTTCAAAT GACGATATTGCGTTAGAGAATGTCATATGTATCATCCGATATCAAACAATCTAGTGTGAATGCAGCACTAAAACTGGAGT TTGAAGCATACTTTCATATTTAATTATGCTTCGAAGTAGGATTTATCAAACTTTAGTTGTAATAATTGCATGTTAGTTAG CATCTTTTTTGTTTTTTTTTTCTCTAGGTACTGTTATTGTGCTTACACTCTATTTCTCTTACCCTCTTTTACATGTTTTC CAGGTTACTTACTTAGGGTGCCTTTTCTGCAAGCTATTGTTCTCTTGCATCCATTGGTGTTGAAGTTGTGAAGATATTGT TGATCTTAACCATATGAGAGCTAAAAGATTGTGATGTAGTAATGGGGTGAAATTGCTGAAACTAGTCAAGTTGTGATCTT CATTGATCTTGCATGTAATCGATTTAACCGCTTCATGACTCTGATTTAGAGTTGATTAGGTTTTCTATGATAGTTTCTGA CATACTTTGAAGTTTCTGTCAGTAGCTCGTATTTTCTGTTATTCAAATTCTAAAATAGGGAAAACTTTCATTGTGCTAAA CCCCTTTAGATAAATGGTGTAGAATCCTTGGTGTATTTGATGAATGTTTGATTTCTCAAGAG
CDS sequence (LotjaGi1g1v0520400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCCAAGGCTACAGGGCTTCATGTAATCATTGCCTTTGATTTGGTTGAGAGGAGTTTATCGGAGATTCCTTTGACACC TGATTTGGCACAGGAATTGGCAACACTTGAAAATTATTATTTGAAGGTACTAGGAGGATGTCTTGGTATGTGTTATAATG GTGTTCGTGATGAATATGAAATGACTGGAATATGGGTCATGAAAGAGTATAGAGTGCAGTCTTCTTGGACTAGATCTTTT GTTCTGCCTAAGTATGACTTTTTACCAATATGCTTCACTGAAGGTGGTGGTGTTTTTGGATCAGATAGCAATGAAAGATA TGAGAAATTTGATGATAACAGAGAACTGCTGGAGGATCACACATATGGACAAGAGAACGAAGATATTTTTGAGTATTCTG AAATGTGCAGGGAGACCATACTAACACTCCCTAGTGAACTACCATGA
Protein sequence (LotjaGi1g1v0520400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSKATGLHVIIAFDLVERSLSEIPLTPDLAQELATLENYYLKVLGGCLGMCYNGVRDEYEMTGIWVMKEYRVQSSWTRSF VLPKYDFLPICFTEGGGVFGSDSNERYEKFDDNRELLEDHTYGQENEDIFEYSEMCRETILTLPSELP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 5 | 134 | 130 | 6.3E-17 | – | |
| PANTHER | 5 | 134 | 130 | 6.3E-17 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0520400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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