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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0523200 |
| Transcript ID | LotjaGi1g1v0523200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Constans-like protein; TAIR: AT3G02380.1 CONSTANS-like 2; Swiss-Prot: sp|Q96502|COL2_ARATH Zinc finger protein CONSTANS-LIKE 2; TrEMBL-Plants: tr|Q52ZI8|Q52ZI8_PEA CONSTANS-LIKE a; Found in the gene: LotjaGi1g1v0523200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:104786168..104789444) extracted from Lotus japonicus Gifu genome v1.2.
GAAGAAAAGAGCAGCTGATGCAGCAGCAAAACCTACAGCACCACCCTCTGACTAAAACTTGGCCCCACCCCAAAGCACAG CCACCCACAAGATAGATAATCTCACAACTTTTCCACACCACTAACTTTCTGCCACGTGTCGCACACAGATTCTCTCCCTC CTCCCAACACTACTAAAAACAGCAAACCACAATCACTGCAAACACAACTCACTGACTATTTTCTTTCCTTCTTTCTTTCC TGGGAAAAACCAAAACACTGTCTTTACAGTTACACTGACAAAATCAAACTACTACTCCAATAATGTTGGAGCATGATCTC TTCACCTCCACCTCCACCACCACTGTCAAGGCCAAGTTTCCGCGTGTCTGTGACACGTGCCGCTCCGCCACATGCACCGT CTTCTGCCGCGCTGACTCGGCGTATTTGTGCGCCGGGTGCGACGCACAGGTACATGCGGCGAACCGGGTAGCCTCCCGGC ACGAGCGTGTGTGGGTCTGCGAGGCCTGCGAGTGCGCCCCAGCCGCGTTTCTCTGCAAGGCTGATGCAGCTTCTCTCTGC TCCTCATGTGATGCTGACATCCACTCTGCTAATCCTCTTGCCAGCCGCCACCACCGCGTCCCCATTCTTCCCATCTCAGG CTGCCTCTATGGCCCTCCGGCCAACCTTTTAGGTGGTGAAGATGATGGCTTTGTCGGTGGTGGTGGTGAGATGGAAGATG AAGAGGAGGAGGTTGTTGATATGGAGGATGAAGATGAGGCTGCTTCTTGGTTGTTGCTGAATCCTGTGAAAAATAGCAAC AACAACAATAACAATAATAACAATGAACACAATCAGCAGGGTAATGGTTTCTTGTTTAGTGGGGAGGTGGATGAGTATTT GGACCTTGTGGATTGTAATTCTTGTGGTGAAAACCAGTTCACCACCACTACTACTACTACCACTACTGATCATTACAACC ACCACCAGCATCAGCAGCAGCATCAACAACATTATGGTGTTCCTCAAAAGGGCTATGCTGGGGATAGTGTGGTTCCAGTT CAGCAACAACAACAACAACAAGCACATCATTTTCAGCTTGGGTTGGAGTTTGAGCCCTCCAAAGCTGGGTTCAGTTACAA TGGTTCTTCTATTAGTCAAAATGTAAGCCTCTTGAATTCCTTTTATTTTGGGGGGTTGTTGTGCGCTGTTTGACTTATAG TATGTTTGGATCAACTTATTTTCTCTCGGGAATCAATTGTGAGGCTAAGAAGTTACTGACAATAGCTTCTTTCCAGAATT GACTTTGGCGGTAGAATCAATTCTAGAAGGATAACGAAACATGCTAGTAGTTTCTATGGTTTTGCTTACAAAATTCTTCA TGTGGGCTTTCTTTCAAAGTTGGATTTTAAAGCTGTTTCAATTTTTTTTTTCTGGTTCTGTTTCAAATTCTAAACACAAT TGGTCATTGATACTTTTTCATGGGAGTTTTGATAAAACTTGTAGTATATCTTCTTTTGAAGTGGCAGTTTCTTTGGTCTC CCCATGATTATCATATTGTTTAATTAGCCATAATTGGATTTAAAAGCAGTTTCTTTTCCGGGCATGTTCAATACTAACTT TAAATTTCTGGTTCAAATTCTGCATACCAGGTTATTGGCCTGGTCCACATAAGGTGTCTCTGATTCTTTCTGCAACTTTC AAGCTCACTTTACCCTTTTTCTCTTTTCACTTTTTTCTTTAGTGGAAGGTATCTTAACAACAAATTAACAAGCTTTCTTA CTTGGACTGGTTCTATGATTGTTTTTCCCCCAATATACATGAGAAAACTTTCTGCTTTTGCTTTTTATCTGCCAAAATGG TAGGTGTCTAGGTGAGGTTTCACCAATTCTATAAATGGGATATGCTGTTTCCTTCCTTTCCTTAAAATTTATTCAATAGT ATATACCTTTTCTCCTCTACCAAGTTGTGTCACTGGACTAGCTCTAAAGTGCTAGAGGCTTTTTCCCTTCAGATTCTCAT ATCTTTTCTAGCTCAAGCAGTGGTTACATGTATAGGAACATTTGTCTGCAAGGGAAATATTCATCAATTTTCCACCCTTT ATAGAAATTTTCTTTGTCAAAAAATTCCCTCATATGTTCAGCCATTTCCATCAGTTTTGTACTTAGCTACAATTTTTAGT GCCAATATAAAATGTTTGTTGCATTCGGGTGATAAAAATGTTAATTACTCGACCCTGTTGTAAAGAGCTTATTTGAGCTT ATCTTATAGCACAAACGTTTATTCAAGTGTTTAGAAAAGCTTATGTAAACACCTTATGACCTACATATAAGCTATTTTGA ACTCATTTTCATAAGCTGTTCAAATTAGCTTATGGACAAGTGCTTATAGTTACTTATTACTTGTTTTGAGCTTATTTCAA TAAGAGTTTCAAATTATCTTATGAATAAGCGCTTATGCGATAAGATAAGTACTTAATTAAGTTGTTTGCCCAAGTGCACC GGTTGCTAGTGGTGCTGCTTAAAAAAGTTATCTTGAATCTATGATCTCATAACATGTTTTGTTTCTTGTCAGGTTTCAGT TTCATCAATGGATGTTGGTGTTGTACCAGATTCAACAATGAGGGATGTCTCAGTTTCCTATTCAAGGCCCTCAAAAGGAA CAATTGACCTATTTTCTGGACCTGCCCTTCAGATGTCTTCTCATTTTTCTCCATTGGACAGGGAGGCCAGGGTCCTAAGG TACAGGGAGAAAAAAAAGACAAGAAAATTTGAGAAGACAATAAGGTATGCCTCAAGGAAGGCCTATGCAGAGACTAGACC CCGGATAAAAGGTCGATTCGCCAAGCGAACTGATGTAGAAGCTGAAGTTGATCAGATGTTCTCCACAACGCTAATCACAG AAGTTGGATATGGCATTGTTCCTTCCTTCTGAATTTGCTGCCAGAAGACTGAGAAGAAGAAGAAGGTTGAGAAACATGGT CATTAGAAATCACAAGCACTTGTGTACTATTACTAAGTTATTCTACTGATAGCTGTATTTTTTATGTATTCTAATTACTT GCAGTTGCACTAATTAGATATAAGCTGTAATATTTTGTTCATTGTCTTCTGAATGAGAATGTTATTTGTAAATACAGTCC TATATTAAGTTATCAAATTACAATCAATATATCTTTGAAATTTTCTAGAGATACATTCATAAAAAATTATGATTCTTAAA CTTCATGAATCAAATTTATGTGCTTACCTTTAAATAGTTAGTTGACTTTCCAATAGAAGTTAGTTTGTGGGACTAAA
CDS sequence (LotjaGi1g1v0523200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTGGAGCATGATCTCTTCACCTCCACCTCCACCACCACTGTCAAGGCCAAGTTTCCGCGTGTCTGTGACACGTGCCG CTCCGCCACATGCACCGTCTTCTGCCGCGCTGACTCGGCGTATTTGTGCGCCGGGTGCGACGCACAGGTACATGCGGCGA ACCGGGTAGCCTCCCGGCACGAGCGTGTGTGGGTCTGCGAGGCCTGCGAGTGCGCCCCAGCCGCGTTTCTCTGCAAGGCT GATGCAGCTTCTCTCTGCTCCTCATGTGATGCTGACATCCACTCTGCTAATCCTCTTGCCAGCCGCCACCACCGCGTCCC CATTCTTCCCATCTCAGGCTGCCTCTATGGCCCTCCGGCCAACCTTTTAGGTGGTGAAGATGATGGCTTTGTCGGTGGTG GTGGTGAGATGGAAGATGAAGAGGAGGAGGTTGTTGATATGGAGGATGAAGATGAGGCTGCTTCTTGGTTGTTGCTGAAT CCTGTGAAAAATAGCAACAACAACAATAACAATAATAACAATGAACACAATCAGCAGGGTAATGGTTTCTTGTTTAGTGG GGAGGTGGATGAGTATTTGGACCTTGTGGATTGTAATTCTTGTGGTGAAAACCAGTTCACCACCACTACTACTACTACCA CTACTGATCATTACAACCACCACCAGCATCAGCAGCAGCATCAACAACATTATGGTGTTCCTCAAAAGGGCTATGCTGGG GATAGTGTGGTTCCAGTTCAGCAACAACAACAACAACAAGCACATCATTTTCAGCTTGGGTTGGAGTTTGAGCCCTCCAA AGCTGGGTTCAGTTACAATGGTTCTTCTATTAGTCAAAATGTTTCAGTTTCATCAATGGATGTTGGTGTTGTACCAGATT CAACAATGAGGGATGTCTCAGTTTCCTATTCAAGGCCCTCAAAAGGAACAATTGACCTATTTTCTGGACCTGCCCTTCAG ATGTCTTCTCATTTTTCTCCATTGGACAGGGAGGCCAGGGTCCTAAGGTACAGGGAGAAAAAAAAGACAAGAAAATTTGA GAAGACAATAAGGTATGCCTCAAGGAAGGCCTATGCAGAGACTAGACCCCGGATAAAAGGTCGATTCGCCAAGCGAACTG ATGTAGAAGCTGAAGTTGATCAGATGTTCTCCACAACGCTAATCACAGAAGTTGGATATGGCATTGTTCCTTCCTTCTGA
Protein sequence (LotjaGi1g1v0523200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLEHDLFTSTSTTTVKAKFPRVCDTCRSATCTVFCRADSAYLCAGCDAQVHAANRVASRHERVWVCEACECAPAAFLCKA DAASLCSSCDADIHSANPLASRHHRVPILPISGCLYGPPANLLGGEDDGFVGGGGEMEDEEEEVVDMEDEDEAASWLLLN PVKNSNNNNNNNNNEHNQQGNGFLFSGEVDEYLDLVDCNSCGENQFTTTTTTTTTDHYNHHQHQQQHQQHYGVPQKGYAG DSVVPVQQQQQQQAHHFQLGLEFEPSKAGFSYNGSSISQNVSVSSMDVGVVPDSTMRDVSVSYSRPSKGTIDLFSGPALQ MSSHFSPLDREARVLRYREKKKTRKFEKTIRYASRKAYAETRPRIKGRFAKRTDVEAEVDQMFSTTLITEVGYGIVPSF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 18 | 65 | 48 | 10.594 | ||
| SMART | 18 | 65 | 48 | 2.7E-9 | ||
| PANTHER | 21 | 399 | 379 | 1.3E-131 | – | |
| PANTHER | 21 | 399 | 379 | 1.3E-131 | – | |
| CDD | 21 | 65 | 45 | 1.65067E-8 | ||
| ProSiteProfiles | 61 | 108 | 48 | 10.737 | ||
| Pfam | 62 | 108 | 47 | 1.3E-6 | ||
| CDD | 64 | 108 | 45 | 1.55711E-7 | ||
| SMART | 66 | 108 | 43 | 5.2E-6 | ||
| Pfam | 330 | 372 | 43 | 1.2E-17 | ||
| ProSiteProfiles | 330 | 372 | 43 | 16.648 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi1g1v0523200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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