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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0536200 |
| Transcript ID | LotjaGi1g1v0536200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RNA-binding family protein; TAIR: AT5G02530.1 RNA-binding (RRM/RBD/RNP motifs) family protein; Swiss-Prot: sp|Q8L719|THO4B_ARATH THO complex subunit 4B; TrEMBL-Plants: tr|I1JDQ5|I1JDQ5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0536200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:106485138..106487732) extracted from Lotus japonicus Gifu genome v1.2.
CAGCACATGAAGAATCTTCAATTTCTTCTGCAAAACCCTCTCTGTTTTCTTCTCACTCCCACTAGTCTCTGTGGTAACAA CAACACTGCACTCTCTCTGTTTTCTTCTCTCTCTCTTCCCCAAAACCCTAGCCCTCCGGTCACTCCCATTTTCCGACGAC AATGCACGCCGGCGTTGACATGTACGACGACGACGGCATTTTCAGAGCATCCTCCTCCGCCTCTCGCCGCCGCCCATACG GTCCCGGCCCGGACCGCCGCGTCGCGTTTCGCCACCTCACCAGAACGACACCGTACTCCGTCCCGCCGCAACCGCAGGTG ATTTAGGTTTTTTCCTTCTTTCTTTTTTAGTAATAAACAGAGTACTGAGTGTTAATGTTCATGTGGTAATGGCAGGTGGA GCGACGAAGGGTGGTGCCTGAGATGGATTTGGAAGACGACAAGGTGTCGGAGAATAAGGGCACAAAGCTCTACATTTCTA ACTTGGACTATGGGGTTTCCAATGCAGATATAAAGGTATCATTATATCATAATTTAGACAAACATTTTATTTTAATCCAA TTTGAGTTCAAGAACATTTCTTGATGCTAGTAGATTTTGTTTTTCTTTCATAATGAAGCTTTTTTCATTTTGACTCTGCC TCTGTATTATTATTGTTTTCCTTGTTGGTGACATTATTTGCTCTTATTGTCTAGTATGAGATACAACATTTGCTCCTTTA TGTAGTGTGCCTGCTTCTTTGGATTATTTGAAGATCATGTATGTGGACTGGTGTATGTATAACATGTAGTTTACTCTGGA TTTCTCGGTGTAGAGAATGCTGCTACTTGCTATTGTTTACGAAGAGTATTCAGTTAGTTTTGGAAGAGTGCTAACAACAC ATTATCTAAGATCATTTTCTTTTATTGGTTGAAATTCATGTGGAACTCGTATGATTTGGGGAATCCCATATGGATTTCAG TCAACAAGAGTGTATGTGTTAACAAGGGTGTGCTGAATAACATTTCTCCTTTGATTATCTTTGTTAAATTAAAAGTAATT TCTGATGTAAACCAGATCAATCTGGTTTTTGAATTTGAATTTGGGCAAGTGTTTTTCCTTTAACTCCTCGTCTGAGGAAC ATTATCAAGAAGACATCACCACGATTTTCACATATGACTTAAGAGCCAAAACCTAACTTGCCCCAACCACTAATGCTACA CCCAACTGCTCTGTATCAAAGATATTTTCTCCCTATGTTATGTATTTTTGTCAGTCAAATAATGTGAAGAATTGAAAACT TTTGTATACCTTTTACAGCTGCTGTTCTCCGAAGAGGGTGAGTTGAAAAGGTACGGCATTCATTATGACAAGAGTGGGAG ATCAAAAGGAACAGCAGAAGTAGTCTTCATGAGGCAGTCCGATGCTTTAGCAGCCATCAAGAAATACAACAATATGAGGC TTGATGGAAAGCCACTGCAAATTGAGCTTGTTGGATCAAGTTTGGTTACTCCTGCCCCTGCCGTTGTGCCTCTTTCGCAA AATAGCTTACAGGGAAGGCTAAACCATGCTCTTGTGAGGTGTGAAATTTTCATTCTTGATCTTATGAGCTGCATAGTTCT ATAAGTTTCATGTCACTAGTCTGAATTCGGAATGTGTGGTATCTTTTGAAATACCTTATAGCCTTCAGTTAAACATTAGC ACTTGTTAGTTGTTACATTAAATCACAAGTATGTTCATTAATGAGTAAAATTCAGGAATTCAAACAATTCCTGGTCTGAA GTTTTTTTTTTTTTTTTTGAAATGCTGGTATGAAGTTATCAATGTATAAATCTTCTTTCATGTATAAGGTATTAAATATA TGTGGGGGAATTGAGCCTCTTGTCCTATTATGCACTAATGTAACCATAGTGATGCCATGGGAATTGTACTTATTATACAT GGTCAATTTTTCTCCTGCATGCCTCTAGTTATCTTCTCTCTTACTATCAATTACTAGTTTCCTACTCTTCTTTTCACAGG GAACAAGGAATTGTTGGAGGTAGCAGGTTCAACAATAGCTTTCCGCGTGGCTATCTTCCAAGGGACCATGGAGAAGAGAA CCATTTCCGAAAGGTGACATCTTATAGAGATCTTGATCATGACTTGGAGGGGTTTCATCGCCGCCGTCCAAGAGGCCGCA CAGGTTTTAAGGGCCATAAGCCAAAGTTGTCCGTTAAAGATCTTGATGAAGACTTGGAGAGGTATCGCTTAGAGGCTAAG AAGGTAAAGAAAGAAAAGGGAGAGTGAAATCATGGTTGATAGCTATAATGACTCGTATTTTGAGTAAATAGGTCAGAAAA GGACTGCATAGGTTTTGATTACTAATCTTAGTTGCATAGTTTTAATTGTACTGCACATATTAGTATGCTATTTGTACATT TCAGTTTTAAATATCAAAACTTCAAAAGACCTAGTTACCTTATTCGTTCAAGCCGAAGTCAATATATTCCTTTGTGTAAT TTTTTGGAATGGTTCAGTGGAGATACTGAAAGTTCCTTTATTTTCTTTTTCTCTGGAAATCAAAATTTCCATGACATGTT GCTTGATGGTGAAGTAATTAGTAGGTGAGTTTTCG
CDS sequence (LotjaGi1g1v0536200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCACGCCGGCGTTGACATGTACGACGACGACGGCATTTTCAGAGCATCCTCCTCCGCCTCTCGCCGCCGCCCATACGG TCCCGGCCCGGACCGCCGCGTCGCGTTTCGCCACCTCACCAGAACGACACCGTACTCCGTCCCGCCGCAACCGCAGGTGG AGCGACGAAGGGTGGTGCCTGAGATGGATTTGGAAGACGACAAGGTGTCGGAGAATAAGGGCACAAAGCTCTACATTTCT AACTTGGACTATGGGGTTTCCAATGCAGATATAAAGCTGCTGTTCTCCGAAGAGGGTGAGTTGAAAAGGTACGGCATTCA TTATGACAAGAGTGGGAGATCAAAAGGAACAGCAGAAGTAGTCTTCATGAGGCAGTCCGATGCTTTAGCAGCCATCAAGA AATACAACAATATGAGGCTTGATGGAAAGCCACTGCAAATTGAGCTTGTTGGATCAAGTTTGGTTACTCCTGCCCCTGCC GTTGTGCCTCTTTCGCAAAATAGCTTACAGGGAAGGCTAAACCATGCTCTTGTGAGGGAACAAGGAATTGTTGGAGGTAG CAGGTTCAACAATAGCTTTCCGCGTGGCTATCTTCCAAGGGACCATGGAGAAGAGAACCATTTCCGAAAGGTGACATCTT ATAGAGATCTTGATCATGACTTGGAGGGGTTTCATCGCCGCCGTCCAAGAGGCCGCACAGGTTTTAAGGGCCATAAGCCA AAGTTGTCCGTTAAAGATCTTGATGAAGACTTGGAGAGGTATCGCTTAGAGGCTAAGAAGGTAAAGAAAGAAAAGGGAGA GTGA
Protein sequence (LotjaGi1g1v0536200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MHAGVDMYDDDGIFRASSSASRRRPYGPGPDRRVAFRHLTRTTPYSVPPQPQVERRRVVPEMDLEDDKVSENKGTKLYIS NLDYGVSNADIKLLFSEEGELKRYGIHYDKSGRSKGTAEVVFMRQSDALAAIKKYNNMRLDGKPLQIELVGSSLVTPAPA VVPLSQNSLQGRLNHALVREQGIVGGSRFNNSFPRGYLPRDHGEENHFRKVTSYRDLDHDLEGFHRRRPRGRTGFKGHKP KLSVKDLDEDLERYRLEAKKVKKEKGE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 4 | 261 | 258 | 3.2E-63 | – | |
| PANTHER | 4 | 261 | 258 | 3.2E-63 | – | |
| SUPERFAMILY | 40 | 150 | 111 | 6.45E-22 | ||
| Gene3D | 64 | 154 | 91 | 2.6E-20 | ||
| CDD | 75 | 149 | 75 | 2.02297E-41 | – | |
| ProSiteProfiles | 75 | 152 | 78 | 15.102 | ||
| SMART | 76 | 148 | 73 | 7.3E-17 | ||
| Pfam | 77 | 145 | 69 | 1.8E-13 | ||
| Coils | 244 | 264 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi1g1v0536200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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