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LotjaGi1g1v0546300.8

Overview

Field	Value
Gene ID	LotjaGi1g1v0546300
Transcript ID	LotjaGi1g1v0546300.8
Related isoforms 7	LotjaGi1g1v0546300.1 LotjaGi1g1v0546300.2 LotjaGi1g1v0546300.3 LotjaGi1g1v0546300.4 LotjaGi1g1v0546300.5 LotjaGi1g1v0546300.6 LotjaGi1g1v0546300.7
Lotus japonicus genome version	Gifu v1.2
Description	LisH domain and HEAT repeat KIAA1468-like protein; TAIR: AT5G16210.1 HEAT repeat-containing protein; Swiss-Prot: sp\|A0A0Y0M151\|CLA2_CLACD Highly reducing polyketide synthase cla2; TrEMBL-Plants: tr\|G7KV74\|G7KV74_MEDTR LisH domain and HEAT repeat KIAA1468-like protein; Found in the gene: LotjaGi1g1v0546300
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr1:107609560..107610823) extracted from Lotus japonicus Gifu genome v1.2.

ATGCCGAATGTAACAAATGATTTAATGCGTCGACGAGAGAGAGCAGATGCTTTTTGTGAGGCAATCCGTGCTCTGGATGC TACAGGTTTGTTCATTTAAAAATTATTTTAGTCTGGCATCGCGAAACCTTTTCAAGCTATTATTATGATTTTCAAGTCAA GGTTTGATTTGTGGTATTAATGTTCCCTCTATTAAAAGATACCCTGAACTTCCTTGTACTGTTATCATATCCAGAGTTTC GATTAATGTAATCTACTCTTGGAGCTACCAGTTTGGTACCATGGCCCAATTATTGCCTGTTTCATGTCTTTAATCTAATT ATTTGAATTTGAATAGAATATTTTTAGGAATAATCCTGACTCATCAAATCGAGTGGCTAATTGTTTTAGGGGGAAGTGTG TTTCTTCATTTCTTGACGTGCCTTTCATTTTTTTTTATAATAAAAAGTATTAGATAGTAGTAAAAGAAAATTACAAGAGG AATCCTAAGATGATGTCCACAACCAAAACCTTCTCAGATTAGGAGGGTTGGCTACATGGATCAAACGTGCCATAATGTCC TATTATGAATTAATGGCAGACCATTTACAAGGCCAAAGCCTTTCCTTTTCGCATCATTATTCATCAAAGTTCTTGTATAT CCTTCTGTAGTTCCCGGTATAATGACATATTTTTTGTAATTTCAACTTCGTTTTGACAATTGTTTGTAATTTACTAATTC CAATTATTTTATGCACCATCCAATACTCTACAGTGTAGAGTCTATATTTGCAACATTATGTGTAAAAGTCATAGTTTTGA AGTTTTAATTTCATGGAGATGATGTTCTTGATTTTTAAAACTTCTTTCTTCCCTCAAGTATTTTTAATTTAGTTTCTCTT CTTATAGATCTTCCTGCAAATAGTGTCCGCGACTTCTTCCTGCCTGCTATACAGAACCTGTTTAAAGACATGGATGCATT GGATCCAGCACACAAAGAAGCCCTTGAAATTATTTTGAAGGAAAGATCAGGGGGAACTTTTGACAATATTAGCAAGGTGA TGGGCGCCCATCTCGGGCTTCCATCATCAGTCAGCAACTTGTTTGGTGAGGGCGGGTTGCTAGGAAAGAAAGAAACCACA GAACCACCATCAGAGGCAGTTGCGTCCCCCAAAGCTGCCACACCACCAACAGAGGACACTAGATTCCGGCGCATCATGCT GGGAAATTTCGGCGACATGCTTCGTGGCAAGGCGAAAGCCCAAGAGGAAGGTCAGAACCAATAA

Download Genomic Sequence

CDS sequence (LotjaGi1g1v0546300.8) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGCCGAATGTAACAAATGATTTAATGCGTCGACGAGAGAGAGCAGATGCTTTTTGTGAGGCAATCCGTGCTCTGGATGC TACAGATCTTCCTGCAAATAGTGTCCGCGACTTCTTCCTGCCTGCTATACAGAACCTGTTTAAAGACATGGATGCATTGG ATCCAGCACACAAAGAAGCCCTTGAAATTATTTTGAAGGAAAGATCAGGGGGAACTTTTGACAATATTAGCAAGGTGATG GGCGCCCATCTCGGGCTTCCATCATCAGTCAGCAACTTGTTTGGTGAGGGCGGGTTGCTAGGAAAGAAAGAAACCACAGA ACCACCATCAGAGGCAGTTGCGTCCCCCAAAGCTGCCACACCACCAACAGAGGACACTAGATTCCGGCGCATCATGCTGG GAAATTTCGGCGACATGCTTCGTGGCAAGGCGAAAGCCCAAGAGGAAGGTCAGAACCAATAA

Download CDS Sequence

Protein sequence (LotjaGi1g1v0546300.8) extracted from Lotus japonicus Gifu v1.2 Proteins.

MPNVTNDLMRRRERADAFCEAIRALDATDLPANSVRDFFLPAIQNLFKDMDALDPAHKEALEIILKERSGGTFDNISKVM GAHLGLPSSVSNLFGEGGLLGKKETTEPPSEAVASPKAATPPTEDTRFRRIMLGNFGDMLRGKAKAQEEGQNQ

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR32059:SF1 View details on PTHR32059:SF1 Search for proteins/transripts with this domain View external data on PTHR32059:SF1	5	152	148	3.0E-63	–
PANTHER	PTHR32059 View details on PTHR32059 Search for proteins/transripts with this domain View external data on PTHR32059	5	152	148	3.0E-63	IPR040362 Show description in modal box View details on IPR040362 Search for proteins/transripts with this domain View on EBI InterPro Service
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	97	125	29	-	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0005802 View details of GO:0005802 AmiGO InterPro QuickGO	Cellular component	Trans-Golgi network	The network of interconnected tubular and cisternal structures located within the Golgi apparatus on the side distal to the endoplasmic reticulum, from which secretory vesicles emerge. The trans-Golgi network is important in the later stages of protein secretion where it is thought to play a key role in the sorting and targeting of secreted proteins to the correct destination.	Subterm of View details of GO:0098791
GO:0032367 View details of GO:0032367 AmiGO InterPro QuickGO	Biological process	Intracellular cholesterol transport	The directed movement of cholesterol, cholest-5-en-3-beta-ol, within cells.	Subterm of View details of GO:0030301 View details of GO:0032366

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0546300.8, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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