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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0550700 |
| Transcript ID | LotjaGi1g1v0550700.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | stress response NST1-like protein; TAIR: AT5G49210.1 stress response NST1-like protein; Swiss-Prot: sp|O00268|TAF4_HUMAN Transcription initiation factor TFIID subunit 4; TrEMBL-Plants: tr|A0A1J7HXC6|A0A1J7HXC6_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0550700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:108172417..108175582) extracted from Lotus japonicus Gifu genome v1.2.
TTACCATTGAAGTAATTTTGAAACTAAAAATAATAAAATAAAAACTATTTGCAAGGTGCAACCTTTACTTTACCTTTTCT TCCCATTCTCTCCCTCAATTGAATCAATGCACTGACCCTCCCTCTCTCGGCCTCTCAGTCGCACCCCTCCGCGCCGTCGC CTGTTTGATCGGAAGCCACACCGGAGTTTCACGGCCGCAGACTTCATCTCCATTTCGGGTCTCTCTATTTGCATCAATCT TTCGCACAAGGTAAATCACAAAATGAATCTCTTTGCTTGATTTTTATTTGCGGCATTGATTTACCGGACCCATCTACATT TTATGCTATGAGAAGTTTTCTTTTTATGCTATTTTACTCTGTAACATTCAAAGCTTCTATTTTTCCTGGTGTATTGGACT GATCACTGATGCATATTAGCTGTTTGATGAAATGCCTGTTTCAGTTTGAGTGTTCATTGACATGGCTGTAGGCTTAACTG AAGCCACTGTAACATAGGAATGTTAGATATATTAGTTTTAGATTTAGGAATTGGTTTTATTCTTATGGTAGCAGCTAGCT AGAGGAAAGAAAAATGATAATATAAAGCCTAAATTGTAAGTCTAGTTACACTGCTACTGGTACCAACGTGATGCGAAAAG TTTTAAATTCTTCTCATGTTTAGTTACTTTCAAAAGCTTAATTGCGTCCTCTAGTGATGTCTTTTATGGGTGCGTATGAT ATACGATGATATTTGATAGTAATACAAATAAGCTCCTCCTCGGTTTTGTTCCTTTGAACTGCTCTGTAATTGTATTAGCT TTTTCCATGGAATCAAACTAGTTAGGATTGAGAATGTAAAGTTGCTTTATGCAATCAATCTTATGAGTCAAATCAAATTT TCAAGTTGTCCAGGCTTGGATTCCATTTTCCACCTAGCCAATTTTGACTCAGCTTTGCTGAAAACATTTTATTAAGTTAT CCAGTTGGAGTGGTGGCCTTTGTTCATTACATGTTATTGTTAGAATGAAGTTTTCAATGTTGCAGTTTTGTTTTTTTGGT TTCACATTGTCGACTGCGTTGTTAATGCTGCATTGTTATCGACTTTAAAGTGTTAATAGCCAAAATATTAGATTTAGCTC CGTGCTTTAAAGGGCCACTAAAGAATTGGTATACATGCTGACTTTAACCTTCAGCTTGTTTTAAATTCCTTATCTCACGT ACTAAAATAAGCTTCTTATATTCCTAAACGGATAAACTGACAATTTGTAACATTTATTCAATTTTTTATAGTTTATTTTA TTCAATATTGTCCTAGTCTTTATAAAATTCCTGTCTTGTGTTTTACTTTTTAGTCATCACCTATTTGGTTTTTCTGGTGC TGTTGTCAATCAGTTCAGTAATGTCGACCTTTTTCCGTTCATCCTTGCGCTCATTTGCCACCACTGCCAAATCTGCACAC CACAACAATCATCGTGACAACCACAAGTTCCTCCCACCAACCTCGTTCCTGGGTAGCTGGGAGGCACCGAAGGACCCCAA GGAGGCTGAGGCCAAGCTTGCTCAGCTTCGCAGGGACTACGCGAAGCAGGTGAAGGAGCTTCGGAAGGAGTACATCGAAG AGATGGAGCTGATGCGCCTTGAGAAGCAGCGCAAGGATGAGGCTCGCAGGGAAGCCCTCAGAGTCGCCACCGAAGAGCGC AAGAGGCTCAAGGCTCAGGAGGCTGAGATCAGAGCCCAGCAACGCAACATTGAACAGCAACAATTTCGAGAAACCCTTGT ATGTTTTTTCGTTCTTTCTTCCCCCCTGTTTTTTTATGAAGTGTGAAGTAAATGTTTTTTTTTCTTCTCCTTTTCCCCTT AAATGAAGAATCTGATTTTTGTTATTTGAATCCCAGCTTGTTTCATTGAAAATTTGTCTAGCATGGGGAGGCATTGGTGC TCTTGTGTTTGTTTGGTTTGTTGAATAAAATCTATTTATTGTCTACTGTTGTGTACTGCTGATTGCATGGTGTAACCTTG TCCTTCTCCAATAACATTGCACTATTCAATTATGCATGCCATTGAAGAATGTGAGAAGTTGAGATGGAAAGTATATTGAT AATCCGAGCATGTTTTATTGAAAATATGATATAGATAAAAGTATATTTCCACTTTATTGGTAATTTTGAGTCTGTTGATA TGTTGGTATGCATTGTTCTTTGAAATTGCTGTTGATTTCCTTTATCTGCAAGGGGAGGGGGATTTAACACATGTTAGAGA GTGCATGAAAAATATACATTCAAAGTTTCTCATTGTAAAATTAGTCTTTTGACTCTTTTCCAATTTCCATCATTATCATA TCAATTATTAACCTTTTCGCCAACTAGCTAGACACTCAATTGTCTGGTCTTCGCAATGCAGTTATCTGTTGATTGATGCA TTTGTAGTCTATACTGCAAATCTCTAGTTCAAGTCACAGTTTTGGAATTAATTTCTTGCCTTGTGTTTGAGAGAAACTCT AAGGAAACACATGCTTGCAGTGTTTGTTTCATGTTTTTCTTTATAGTACATTCTATTCTAACTTTAGCTGATCGTCATTG GTTGATTTCTCATTATTTGTTATTCAGTTAAAAGAAAGAGCAGAGAAACTTGAATACTGGAGGAGGAAAGTCAAAATGCA CGAGGAGAAGAAGGCAGAGAAGAATGAATTATTGCGTCGACAAAGTTCGATGTGGGTTGATGAAGCTGAAATTGAGAAGC AAATATTCGATACCGTAATTGCTACAACGCATTTTTGAGCCCCTTGAAGTATATCGATACTGATTAGTAGAATCTAGTCC TGTGTGCAAAGCAGCATCATATAATTAGTTCTTGCTTTCAGAGTATCACACAAGTTGCATGGTCATGCATGGAAATAAGC CTTACATTGTCTTATTTGGGAATTTTGAAAGAAATACTTGCTATGGGGGTGCAAACTATGCTGTTTCTTTGAAGTTACTT GGTAAAACAAGTTGTGATTTTGGCTTTGATGCAGATACCTTTCTGGTTAGATTTGGACATTTTTAATTTGAAATAGGTTG TTTGGTTCATGGTTTCCTAACATTAACATGTAGAATCAGTTAACCTGGAAAACCCAGGCAATAAATGATTAGTGATCAAA AAATATGTTGAGTATGCTTCTGATGAATGCTCGAGGTTTCTTCCTG
CDS sequence (LotjaGi1g1v0550700.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCGACCTTTTTCCGTTCATCCTTGCGCTCATTTGCCACCACTGCCAAATCTGCACACCACAACAATCATCGTGACAA CCACAAGTTCCTCCCACCAACCTCGTTCCTGGGTAGCTGGGAGGCACCGAAGGACCCCAAGGAGGCTGAGGCCAAGCTTG CTCAGCTTCGCAGGGACTACGCGAAGCAGGTGAAGGAGCTTCGGAAGGAGTACATCGAAGAGATGGAGCTGATGCGCCTT GAGAAGCAGCGCAAGGATGAGGCTCGCAGGGAAGCCCTCAGAGTCGCCACCGAAGAGCGCAAGAGGCTCAAGGCTCAGGA GGCTGAGATCAGAGCCCAGCAACGCAACATTGAACAGCAACAATTTCGAGAAACCCTTTTAAAAGAAAGAGCAGAGAAAC TTGAATACTGGAGGAGGAAAGTCAAAATGCACGAGGAGAAGAAGGCAGAGAAGAATGAATTATTGCGTCGACAAAGTTCG ATGTGGGTTGATGAAGCTGAAATTGAGAAGCAAATATTCGATACCGTAATTGCTACAACGCATTTTTGA
Protein sequence (LotjaGi1g1v0550700.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSTFFRSSLRSFATTAKSAHHNNHRDNHKFLPPTSFLGSWEAPKDPKEAEAKLAQLRRDYAKQVKELRKEYIEEMELMRL EKQRKDEARREALRVATEERKRLKAQEAEIRAQQRNIEQQQFRETLLKERAEKLEYWRRKVKMHEEKKAEKNELLRRQSS MWVDEAEIEKQIFDTVIATTHF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_POSITIVE | 1 | 18 | 18 | - | – | |
| PANTHER | 3 | 182 | 180 | 8.1E-77 | – | |
| MobiDBLite | 13 | 44 | 32 | - | – | |
| Coils | 50 | 81 | 32 | - | – | |
| Coils | 89 | 123 | 35 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0550700.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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