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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0553800 |
| Transcript ID | LotjaGi1g1v0553800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transcription initiation factor TFIID subunit 10; TAIR: AT4G31720.1 TBP-associated factor II 15; Swiss-Prot: sp|O04173|TAF10_ARATH Transcription initiation factor TFIID subunit 10; TrEMBL-Plants: tr|A0A151TDI4|A0A151TDI4_CAJCA Transcription initiation factor TFIID subunit 10; Found in the gene: LotjaGi1g1v0553800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:108570301..108574602) extracted from Lotus japonicus Gifu genome v1.2.
CCCAAACCCAACTCCCATTAAACCAAAATAAACGGGAACCCAATGTCCAACTCCAATCCTATATAGAGTTATAGACTCTC TCTTTGCTTCTCCTCTTGTTCTTGTTCTTCGCAGAGCCCAGCCACGCACCGCGCCCACCACATCCCACACGCACCGCACC CACCACACCTCTGTTTCGCTGAGCCACCACAGTCCACAGGCCCACACAGCCCTGGCTTGATTTTGCAGGTAAAAGCTTTG ATTCCATTGATTTATGTAAAACCTTGAGCCTTGAGGTTGAATTATCAATGGAAGTAACCGAGTTTGATTTTTTCTTAGCA TATTTTAACTTGTAATGACACATGAATTTGTTCACTCAGCAATTCAAGTTCCTTAATTCACTGTCTATGATTCACAAGCC ACTTCCGTTCCACAATTTTCGTTGTCGTTTTTTGCTAGGTTTATTGTTTCTGGATGTTAAAAAACTTACCTAGTTTAGAT GGCTGTTAAATTACTGAAAGAAATTCTGGAAGCTGCTAAAGTTGTTGTAACAGTTCAATGAAATAGTATGCTTTAATAGC TTTTGTGAATGAAACTTCTCTTATCATTTTTCTGACATTGTTTGCTAGATTTTCTATATATTTCATGCTTCATTCTTGCT TCAGATTTCTACTGTTATATTTCTGGTTGAATTAAGTTTGATTTTGTGTGTGAGGTCTCATTCTTCTGGTTCTAAAGTTT GGTGCCATTTTACATGATGTGTATCCAAATATTTGATTATGGTTTTCAAATTAGACACTTAGGCTTAACATTGCCCAGGC TCGACAAAAATCCTGGTTCTGCTATACTGTCACCGTCACTCGCTTGCTGCCGTTGCTCTTTCTCCTTTATTCCTTTCATT CAATTTTGATTTTGATTGAGTTTTGGGAATGCAGGGCGGTGTGATTGATTGTTGATAATAATAGAAATGAACAACCCTCA ATCAAGTGAAGGAAGGCCCGATGATGATGCTGCACTCTCTGATTTCCTTGCTTCCTTAATGGATTATACTCCCACTGTCT CTTTTCTTTTCTCTTCTTTTTCTTTTCAATTTTCTACTTTCACTTCAATTATTCAAATTAATTTTACCTTTTTGTTTTGA GTTTATGTAGATACCTGATGAGTTGGTGGAGCATTACTTGGCCAAGAGTGGCTTTCAGTGCCCTGATGTTCGATTGTGAG TGTTTGTTTATTCAACTTCGATTCCAAATCTTAGCCTTTCATATATTCATTCCATCTTTGACTTTGAAATATTTGTTTCA GGACTAGACTTGTAGCTGTTGCCACTCAGAAATTTGTTGCTGAAGTTGCAGGCGATGCACTCCAGTACCTTCCCTTTGCC CATTTTTGTTTTTGTTTTATTTCGCATTTGTTTTAACTTTTAACCTTCAATCACTGCATGAATTGACACCCAAATATGAA AGGAAGAATGAAAATTAGAAAAAAAAGTTAGTATTTATAGGGCGTGTTTGGATATCCAACTCTAAGTTATTCAACTAGTA TCCAAACACACATTATGTTGTTGAGTGGCTTTTACCCCCCTTAGGAGTTGGGAGATTGCCTGTTCTGCTCTCTTTGTTTT TTGGATGCTTGTTTCGTTGTCTAAGAGTGTGTTTGGATGCAGATCAAAGAGCACTTATTGGAGCTTATCCAATGCTTTTA TTTTTTTCTTTCTAGTTGATTAGCTCCATTAAGATTTCTTTAGTCCGTTTCAAACTGGCTTTTAAGTTGTTTGGTTTTAC CATTGTGTAATCTGAAAATGTTATTTCTCCTTTTTTTATAATCATCTATAATAATGGCATTGCTATTTCTTTCGGCTTAG TCATGAGTGCATTGTTATTTGCCATTTAGTTGCTATGTCTTTCTTTTACATGTCTATTCCCGCATGATGATTTCACTCGA TGTCAACTGCAGGCACTGCAAGGCAAGACAGGCAACGATTCCAAAAGACAAAAGGGACAAGCAACAGAAGGTTTTGAAAG CTCTTAATCTGGTTTTAACTTTACACATTCACTGTATGTTTCTAGTACTTACATTTCATTGTAACAGGAGAAGCGCCTAG TTTTAACAATGGAAGACTTATCAAAGGCACTGCGTGAGGTAAGAGTCAGAGAAGTTATCTAAATTTAAATGGAGTGAAGT TTCCTTCTTGTTTAAGTGTCATAAGACTTGCAACAATCTGTTATTTGTAGTGTTTACTTTACACAGGCCATCAATCATTA TGCTATACATATATACACTGCTGCTGGCTGTATATTTATCCCTTGGTGTGCTCCCATCCCTGCATCTGGCTACATATAGA TATACGAATATCCACTCTTCTAGACCACTTTCTAACATTCCATGATTCCATCCATCTTTTAACCCTTTGCAACAATTTTT AGTCTAGTCTAGGCTTTTGGAACCATCCATTCCACTCCATTGAAAGCCTACTGCTCCGCTATTATTAGCTTGTCACATTT GTTGCAAGATTAGATAATAATAATGGCTGATATTCACTACGTAGAGTGACTTAAAGCCGTGACAAATCACATCTTCTTGG GGTCAAATTACTGTGGTCTCTGCTGCTTTGCACACCTCCACCTCGGATGTCATCTGTCACTAATTCATTTCCCTCTTATG TCTGAATTGAAGAATGAAAACGAAGACTGAGCTGGTTTGGATGCTTTCTAGATCAATTTATGATAAGACTTGTGGTTTGA ATGTGTTCACTGGTTTTTTTAAACTTCCTGTTTAGGCTCCACTCTGCCTAATTAGGCTCCACAGGGTTTTGGGTGGTAAC AGACACATGCCATAGGTGAGCAAGGCCTTGTTTGGGATTCGATTTCCCTTTGGGCCAGGAGCACTATAGGTAAAGCCCTC TCCCTTGGGATTTTGACCCCCAGGGATTGAATTAAGTTCCTCTTGCCAAAAGACACAAGCTGTACCCTTTGTGCCATCCC ATGCTGGTCTATTCCCGTTTTTAGAATATTTTTTAAAGCTTCTGGGATCAATGTTATTGTATCAAACTGAGCTTGGTAGA AGATAAGATGTTGTTCGTTTTTCATTGATTGTGCTTGATGTGTTAACATCTCTTCACATTTAATTTACTTATTATCTTTT ATGAACAGTATGGCGTGAATTTAAGGCACCAAGAATATTTTGCTGATAGCCCTTCTACTGGAGTAGATCCTGCCACCCGA GATGAATGAGACCAATGATGAATCAGGCTTCTACATTTTCATATGAGTAAGTACTTATACATACCAATGGAGAATTGAAT CTTTTCCATTGATGTATTGCTAGTTCTCTAGTTTTATGTTATGCCCAATATACCCATTTTATGTTGTTGGATGCAATTCG TTAATTAATGCACAAACATAGCAGTTAAATTCTAGTCAAGTTACAGTCCCTAATCATCGCTACCATTTTAGTTTCATTCC ATGGTTCTAACTAGTTCTGTTTCTAAGAGTAATTTAGTTGTTTTGTAGTCTAACTAATGGGGTGATTTTCATGATGCACA AACTGTAGCAACGTCTTGAAGCTGCAAAAGCACTGCAATTGGTCAGAACTATCATTAAAGTTGCTTGTCATAACTTGTGA ATCTTGGTCCTTGGAAGTATCTACAATCAACTTGTCTAATGTTTTTCTCTCTAAATGCTCTGTCTGTACCATATTTTTCT TCCTTGGAAGTATGAGATTTGTATAATGCATTGCAAAAGTCATTAAGGTTGTTATGTTATTCATTTTCATCTTATCTCTT TTCATCATGACTTAATTCATAGCAAGATATTGCTCCAACCTGTCCTTGCCTCCGTGCTTTATTGGATACATTGTGGAAAA TCACAGTAAGCAAAAATCAAAGTGGGCAGAAGTAATTTAGTTGGTTTATGTTTTTGCAACTTTTTTACAAACACAATCCA AGTGTTCGTTCGAGTGATCAATCAGGAAAACTTATGATTACAAAGGTTGTGGAATCAATGGTCACAATACTACCCTACAT ATCACTTTCATTAACACATTGTAAACTAGAATTGTCAATTGCATGCTGTTTCACATAACTGCTATATACAGATTTCCGTC ACTTTAAAACAATGTTTTTGAATGGGCATGACACCCTTCATCCAATCTTAAACTGTGGTGACTAATTTCTCTCAAGCGGT GTTCTAGCTATGAGGTAATTTTTGTCAATCAAACCTTAGTGATTTTGCAAAGACACTTACATGCGAAGAACAAAGTAACA AAAACTAATAGGTTAGTTATGCAATGCTACAACATAAGAATAATACAAATCAAAAGATGCTC
CDS sequence (LotjaGi1g1v0553800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAACAACCCTCAATCAAGTGAAGGAAGGCCCGATGATGATGCTGCACTCTCTGATTTCCTTGCTTCCTTAATGGATTA TACTCCCACTATACCTGATGAGTTGGTGGAGCATTACTTGGCCAAGAGTGGCTTTCAGTGCCCTGATGTTCGATTGACTA GACTTGTAGCTGTTGCCACTCAGAAATTTGTTGCTGAAGTTGCAGGCGATGCACTCCAGCACTGCAAGGCAAGACAGGCA ACGATTCCAAAAGACAAAAGGGACAAGCAACAGAAGGAGAAGCGCCTAGTTTTAACAATGGAAGACTTATCAAAGGCACT GCGTGAGTATGGCGTGAATTTAAGGCACCAAGAATATTTTGCTGATAGCCCTTCTACTGGAGTAGATCCTGCCACCCGAG ATGAATGA
Protein sequence (LotjaGi1g1v0553800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNNPQSSEGRPDDDAALSDFLASLMDYTPTIPDELVEHYLAKSGFQCPDVRLTRLVAVATQKFVAEVAGDALQHCKARQA TIPKDKRDKQQKEKRLVLTMEDLSKALREYGVNLRHQEYFADSPSTGVDPATRDE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PIRSF | 2 | 121 | 120 | 1.8E-50 | ||
| PANTHER | 6 | 135 | 130 | 9.2E-62 | – | |
| PANTHER | 6 | 135 | 130 | 9.2E-62 | ||
| CDD | 15 | 120 | 106 | 4.18159E-56 | ||
| Pfam | 29 | 78 | 50 | 4.6E-24 | ||
| PRINTS | 29 | 45 | 17 | 1.4E-28 | ||
| PRINTS | 49 | 71 | 23 | 1.4E-28 | ||
| PRINTS | 95 | 117 | 23 | 1.4E-28 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | ||
| Biological process | DNA-templated transcription, initiation | Any process involved in the assembly of the RNA polymerase preinitiation complex (PIC) at the core promoter region of a DNA template, resulting in the subsequent synthesis of RNA from that promoter. The initiation phase includes PIC assembly and the formation of the first few bonds in the RNA chain, including abortive initiation, which occurs when the first few nucleotides are repeatedly synthesized and then released. The initiation phase ends just before and does not include promoter clearance, or release, which is the transition between the initiation and elongation phases of transcription. |
Expression pattern of LotjaGi1g1v0553800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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