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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0555800 |
| Transcript ID | LotjaGi1g1v0555800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cyclin; TAIR: AT1G76310.1 CYCLIN B2;4; Swiss-Prot: sp|Q9SFW6|CCB24_ARATH Cyclin-B2-4; TrEMBL-Plants: tr|A0A0S3R9R9|A0A0S3R9R9_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0555800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:108818779..108825258) extracted from Lotus japonicus Gifu genome v1.2.
CACGAAGCCAACCCTTACATCTTCGTCTCAAACTCCCTTTCCAGTTTTCATCATCATATTTGAATTTTCCTTCTTTCAGT CACTCAGATACACACGTATCAAGGTACCTACCTACCTTCTTCTTCTTCCTCACTCCTCAATGATATCATCTTGATTTGAG TTACTCTTCATTCTATGGATCTTGATTTTTTCTTCGATTTCCCCTTATAACCCTCTTTAATCTTTCCATCATTGAAGGTC CGAGAATGGAGATGGCACACAGCCACCGGCTTCCTCTCAGGAGCATCAATCAGAATATTATGGACAAGGACAAGCCTTGT ATTCCCAATAAAGTGTCTCTTTCTGGGTAAATATTTCAATTTAAGATTACGGTTACATTTTCCTCCTTTCTTTTTTAACA GACAAGAATTGCAATATATTTATTATAGCTTCTGATCCTCCTTATTTACCTTGTCTTTTGATTTCTCTGCTTCAGGAACC AGAACCTGTTAGCCTCGACCCCGAGTAACCAGTTAGATTCTGCTATCATAGATAATGGTGAGTACGAGGATGCAGTTCCA GTATTTGTGAAGCACACTGAAGCGATGCTAGATGAAATTGACATGATAGTAAGTGTTTTTAGTCTGTACTTATCTTGATA CACTTTTTTGACAGAATATCATAATGTGTTGTGCTTTACTGCATCTGCACCTAATGTTTGCAGGAGGAAATTGAAATGGA AGATGTGGAGGAACCTATTATGGACATCGACGCTTGTGATAGGAATGATCCGCTTGCAGTTGTTGAGTACATAGATGATA TCTACTGTTTTTACAAGAAAACTGAGGTAAGCTTGAATTTCAGTGAGTTTCTAGACCTGGAACATCTAATCTAGGCTTTT TTTAAGAGAGGATGATGTATCATAAACTAAGACCATGCGCCAATATTAGAGAGTCTAGCTTCTCAGTTCTCATGATGAAC AACCACTCTTTAATCAGTTTAATGTTAATCAATTAATTAAACTTCTTGTAGATGATTTTGGACTGCCATAGCCTGCTTTC TTTCTTTCCCCATTTATAAAACCATTTGTAGATCAGAACATGTAACAGGACAGGCCCTTTGGGTATTTTGTCAGCTAGAC TGGAATCACCTTTGGGCTATGGTTTGACTTGGTAGCTTAATTAACTTACTGATAAGTATGAAGATAGTGGATGTGACCTA TCATTGCTTTTGCAGAAATCTAGCTGCGTCTCTCCAGCTTACATGACTAGTCAGTTTGACATTAATGAGAAGATGAGGGC CATTCTTATGGACTGGCTTATTGAGGTACAAGGTTTATGTTTCAGTCCCATGTGAATAGAGCAAGTTTATTGAAATAGAA TTCCTTTAAGGTTGAGCTTCTTTAGACATTAATTCAAACTTGACCACCCCATCCTACAGGTTCACTATAAATTTGAGCTT TTGGAGGAGACCTTGTTTCTCACTGTCAATCTCATAGACAGGTTCTTGGCATGTCAGACAGTGATAAGAAAAAAGCTTCA GCTGGTTGGTGTAACCGCCATGCTAATAGCTTGCAAGTATGAGGAGGTATCAGTCCCCACAGTTGAGGATTTTATTCTGA TAACAGACAAGGCATACACAAGAAATGAAGTTTTGAATATGGTTAGTAAATTTTGTACATTATTTATCCTTCCTCCCCCC CCCCCCCCCCCTCCTTTTAATTTTTGAAATGTATCTTATTAACATATGCGGATATGCCAATAGGAGAAGCTAATGGTGAA CACCTTGCAATTCAACTTGTCTGTGCCTACTCCGTATGTGTTTATGAGAAGATTTCTTAAGGCAGCTTATTCTGACAAAA AGGTATGTAATGTAACACTGTTTTGCAAACATAAACTTCAAAATAACACTGTTTTGCTACATAAACATCAAAAGTGATGT AACCAAACAAGTATGGGATATGTGGACATGTATCAGCTGGAGCTCTTGTCCTTCTTCTTGATCGAACTTTGCTTGGTGGA GTGCAAAATGCTGAAGTTTTCACCATCTCTGCTAGCTGCTGCAGCCATATACACAGCTCAATGCAGTCTATACCAGTTTA AGCAATGGACTAAGACCAGCGAGTGGTATACTGGTTACTCAGAAGAGCAGCTTCTGTGAGTTGTTTTAGCAATGTCATAA ATTTTCTAAAGTATGATGACATAAATAGTAACTTTGAATCTTTCTGTATGCTGTCAGAGAATGCTCAAGGCTGATGGTTA CTTACCATCAGAAAGCTGGATCAGGGAAACTCACTGGAGTATATAGGAAGTACAGTTCGTTGAAGTATGGTTGTGCTGCA AAAGTAGAACCAGCCCATTTCGTACTGGATGGTAATTAAGGAATCAATGCATGTCATTTCACAGAACGTGTTTGAGGTTT TTTTGCTTGTATAAACCTAGCAACAGAAGTTGCAGCATCCTTACCCTTTTTAATCTTTCTTTCTTTTCAAATTTTGGTCT GTATATGTCTGTGCGGATGTGCAGTTTATTGAATAGAGTACTTTTCTCTATCAGGAATCTATGTTATTTTCATATTGCAA GTAATTTACTTGAGAGATACTCAAGTATCTTTAAGATTTTCATGTTTTATCATAATCATTTATAACTAAGCACAGCCACA AAGTTTGCATGAATACATCTCATGCATTGCATGAGGATTAGAGAAAGAAAACTGCTTGTTTCTGACAAAAACTACAAGCT ATATAGCATTTTACAGACAAAGGGAAATTAGTCTCCTAGCTGATCATCACCTCTAAACTATGAGTTTGAGGTGTTTTACA AAGTGCAGTATTTGTAGATCATCTTCACAGGCCGTCACATAGTTGAATCATATTCTACAATTGGCAGCTGCACAGAAAGT AAAAGAGAAGAGTGTCAAAAATATAAATTAATATGACGAGTTAATATTAGCATAGTAGCAAACCAAATGACAATAAAAAA GAACAACAGCTAAAGAGACAAAAATGGTTGAGCATGTACTGCAGGAGCAGCTTAACAGTATGGGCAAATGGACTGGATTA CTAGAGCAATAGTTTCTAGCTCTACCCCACAAAATCCTAAAACCACACTGTACGATGTTTTGAGTGATAGAATATGAACT GAATAGTTGGCGCTACGTCAATACTATTGAGGAAATTGGTTTTAATGTCATCTTAATTGGTTTTGCTGCATTGCAAGAGC CAATGGTGATGGGTGAGATGAAGAAGATGATTACGGGTGAGGTAGGTTTAAGGTGGGAGGAGGATGGTGGTGAGGGAAGG TTAAGATTGATGAAGAAAAGGAAGAGGATGGATGGTGGTGACAATGGTGGAGATTAAAGAAGAAAATGAAGAGGATGGTG GTGAGAATGGTGAAGATTAAAGAAGAAAATGAAGAGGATGGTGTTGATAATGGTGAAGATTAATGAGGAAAGGAAGGAAG AGGATGGTGGAGATAATGGTGAAGGGAATGTAAGGGATGATATTGATTTTTAAGGGTATTTTAGTAAAGTACCATTTAAA GGGATGGCATTAAAACCAATTAGGATGACATTAAAACCAATCCCCAATTATTGACCCCAAAGAACCGGCTATTCTTTTTT GTCCGTGCCCTAACAGTGCATCATTCCGAGAATGGACATCTCTTTTTTATTGCATTTTAAATGGCAGGCCACTTTGTTTT GATAGAAGCAACAAAATAACAAAATGCATCTCTTCAGATTTGAACCGAGCTCCTTGAAACAAAGTGTCAAGTGCTGGACG GCTAAAACACCAAATTGCAAAATCCAGTTGAAGTACATACAACAGAATAATTATTTGAATATTTTGAGCAGCTGAATATC CTACATAATTGCCATGTGACACAATCTTATGCATTGCATGCGGAATTGCGGATTAGGGGGAAAAAACAGATTGTTATCTG TTTCTACCAACATGGCAAGAAAAATCCCATTTGAGTAAATATTTTAAGACTAACACCGAACTGGTAGCGAGTTTGGTGTT TGACCCCTGATAGGTCAGTGTGTTTAGTTTCCCGTTGGGAAACCTAAATACCTAATACTTAATTTTGGTTGAGTAAAATG AATAAAATCAATTCTAGAGGAAAATATTGATGTTTGAGAGTAATTGTGGAAAATTGATTTCAGACCTAAAATTAATCTCG CTAGAAGCTAGAGAGAGTAGTTTATGTGTTAAACATAATTACTTGTGAGATTTTACAACTGCGTTTCACAACATTACCGA ACAAAGATCACATTTTCGTAAGTCTATCCAAACATGTATTCATTTTCAAGTAACTTTTACTAATAATCAATTTTACCAAA ATCAATTGTGACAAACGATGATCCAAATTCCAAACACACACTTAACCATGAATAATTATATAAGGTAGCGCAATGTGTAC TCACTGCAATAGACAAACTGATTCAGATCAAGTGTAACTCGGCCTTGTTTCGCTGCGTCAAATGAATTAAACAGATTCCT GAGAGAAACAACAAAAGATCCTTAATATAACATCATTGAGAAAAATACAATGAAAATTCAGTGCTATGTTGGAAAAATGG GGGCCCTGTTAGAACCACAAAGCTTTCCTGGAAATTGTACAAAGTGCGAACATACCGAGCTGATTGTAAGAATATACAGA GCGATATGAAGTCGTCCAGCCGAAGCCTCCCATTTTTACTTTGATCAAAGCTCTGAAAAGAATAAAGGATAAACACTTTG GCATGGTCATCTGAATTGCAATGTTGATGGAAGTATAACCAACTACAGTTTAATCCATGAGGAAGCACAAGGAGTGTAAA CCATCTTGACATAGTTTTGACTACAACCATTGATTGTGATGCACAACTGCTCCAGCATAAATTTAGTTCACATGACATCT AAAGTCTAAACTACAAAGATGTTATACCTCACAGACAGAGTAGAAAGCAGGAGAATCCAGCATGAAACCAATTTTTACCA AAGCCTGAAAACATATTCAGGAATTCATCAAGACGAGTTTTATGCAGAAATAAGCATAGTTATGTAGACTCTAATCAATA ATATTCTTATATCCTGAAGAAAACAAATATAGCAAGGACACCACTGTAATAGGAGAAAATACATCATTATTGAACAAAAA GGAACTTAGCAGTTTATTTGTACTGGAGGAGTAGTTTTAAAAACTATAAGATCAAGTGGATGGACAAAGCTAGCAACAGT GAGCACACAGCATAATTTAGAATGTTGCTGGAATAATTCTTTAAATATACCTCAAATACATCATCAGGTACAAGAAAACC ACGACCCCTGCATCAATAAACCCAGCAAGTGTTAACGTTCAAAAGTAATCTGTCCCGAAGGAAAAACCAACAAAGCAGAT TTTATATCCAAATCAGAGTTCAATTCTAGCTTAGACCAGGAGGGAGTGAAACTTCCAAACCAAACATGTTTTGACATCAC CAGTCACCGCAGACAAAGGACTTGATTGTGGAGAAGACTTTCAATTACAAATAGTAGGTATTTAGGCTTCAGAAGTACCC GTGTTACCAAATAGTGGCTATAGCGTAGCGGATTTTTGGCTAATCGCGACGCCGCTATTGCCCACTATAGCGTGCTATTC CAGCTATTCGCTGCTAAATAGCGGCTGAAATAGCGGATTTTTTGCTTACTGCGATGGTCCGCGATCGCGATTTGACAACA CTGAGAAGTACTAGGCCACAAGAAAACTAGGATTCAAACGTCGGAGGCTCCCGTGATTTATAAACCTTGAAAGTATTAAT TCCTTTCGTGATAGATCATTCACTAATCATCATGTAGTTACTCTAACCAGTCACCAGAGATAGGTATATTTAAAGGAAAT TATTTAGAATTATAAAAATGAAATGAAAGTGCATAACCTTAATGAGAAAAGAAAATAAAAAACAATTACCTCTCTAGATC AGAAAATGCATGCTGAACCTGCATAACCATTTAAATAGTATATTAGGGACATGTGGATTCATTCCAGAGTTATTTAGCGC AAGTGAAAGCACTGACCTTAAGAAGGAAGGTGTTGAGAGCAACAAATTCTGGGAAAAGCAATTTATGGGAAGGTTAGATA GTGAGATAAGATGTAACGCAAACATAAAATGAGATGCATTGCAATTGCATACCTTGAAAGCTCATGGTACCATTCCTATC AAAGTCGCACATCCTGATCATCTGCTGAACAACTGAGAGCGGAAACTCGAGGTTGCCCACGGCCAGGGCCGTCTGATTGA TTGTCAATAACAAACAAACTTTAATTAATTAATTAAATTAATATTGCAGAATTGAAATTCAAATCTTTACCTTGAGTTGG GGCGCTGTTATGCTTCCAGTTTTCTCCGAGTCAACTCGGTCGAACCACTCCCGGAGCACTGCCTTTTTCTCCATTTCATC CATTCTGCTCAAAACAGTATCAACAAGCATAAAAAACAAAAACAAAAATGTATTTAGACTTAATAGTATTTTAGTTCATC
CDS sequence (LotjaGi1g1v0555800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGATGGCACACAGCCACCGGCTTCCTCTCAGGAGCATCAATCAGAATATTATGGACAAGGACAAGCCTTGTATTCC CAATAAAGTGTCTCTTTCTGGGAACCAGAACCTGTTAGCCTCGACCCCGAGTAACCAGTTAGATTCTGCTATCATAGATA ATGGTGAGTACGAGGATGCAGTTCCAGTATTTGTGAAGCACACTGAAGCGATGCTAGATGAAATTGACATGATAGAGGAA ATTGAAATGGAAGATGTGGAGGAACCTATTATGGACATCGACGCTTGTGATAGGAATGATCCGCTTGCAGTTGTTGAGTA CATAGATGATATCTACTGTTTTTACAAGAAAACTGAGAAATCTAGCTGCGTCTCTCCAGCTTACATGACTAGTCAGTTTG ACATTAATGAGAAGATGAGGGCCATTCTTATGGACTGGCTTATTGAGGTTCACTATAAATTTGAGCTTTTGGAGGAGACC TTGTTTCTCACTGTCAATCTCATAGACAGGTTCTTGGCATGTCAGACAGTGATAAGAAAAAAGCTTCAGCTGGTTGGTGT AACCGCCATGCTAATAGCTTGCAAGTATGAGGAGGTATCAGTCCCCACAGTTGAGGATTTTATTCTGATAACAGACAAGG CATACACAAGAAATGAAGTTTTGAATATGGAGAAGCTAATGGTGAACACCTTGCAATTCAACTTGTCTGTGCCTACTCCG TATGTGTTTATGAGAAGATTTCTTAAGGCAGCTTATTCTGACAAAAAGCTGGAGCTCTTGTCCTTCTTCTTGATCGAACT TTGCTTGGTGGAGTGCAAAATGCTGAAGTTTTCACCATCTCTGCTAGCTGCTGCAGCCATATACACAGCTCAATGCAGTC TATACCAGTTTAAGCAATGGACTAAGACCAGCGAGTGGTATACTGGTTACTCAGAAGAGCAGCTTCTAGAATGCTCAAGG CTGATGGTTACTTACCATCAGAAAGCTGGATCAGGGAAACTCACTGGAGTATATAGGAAGTACAGTTCGTTGAAGTATGG TTGTGCTGCAAAAGTAGAACCAGCCCATTTCGTACTGGATGGTAATTAA
Protein sequence (LotjaGi1g1v0555800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEMAHSHRLPLRSINQNIMDKDKPCIPNKVSLSGNQNLLASTPSNQLDSAIIDNGEYEDAVPVFVKHTEAMLDEIDMIEE IEMEDVEEPIMDIDACDRNDPLAVVEYIDDIYCFYKKTEKSSCVSPAYMTSQFDINEKMRAILMDWLIEVHYKFELLEET LFLTVNLIDRFLACQTVIRKKLQLVGVTAMLIACKYEEVSVPTVEDFILITDKAYTRNEVLNMEKLMVNTLQFNLSVPTP YVFMRRFLKAAYSDKKLELLSFFLIELCLVECKMLKFSPSLLAAAAIYTAQCSLYQFKQWTKTSEWYTGYSEEQLLECSR LMVTYHQKAGSGKLTGVYRKYSSLKYGCAAKVEPAHFVLDGN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PIRSF | 16 | 362 | 347 | 4.7E-129 | – | |
| PANTHER | 34 | 359 | 326 | 2.6E-198 | ||
| PANTHER | 34 | 359 | 326 | 2.6E-198 | – | |
| SUPERFAMILY | 99 | 235 | 137 | 4.71E-49 | ||
| Pfam | 110 | 236 | 127 | 2.8E-44 | ||
| Gene3D | 114 | 349 | 236 | 3.7E-90 | – | |
| Gene3D | 124 | 236 | 113 | 3.7E-90 | – | |
| CDD | 139 | 228 | 90 | 3.47129E-24 | ||
| ProSitePatterns | 140 | 171 | 32 | - | ||
| SMART | 145 | 229 | 85 | 1.3E-28 | ||
| CDD | 236 | 323 | 88 | 5.70124E-17 | ||
| SUPERFAMILY | 237 | 355 | 119 | 2.15E-38 | ||
| Pfam | 238 | 353 | 116 | 1.3E-35 | ||
| SMART | 238 | 355 | 118 | 6.6E-38 | ||
| SMART | 242 | 324 | 83 | 2.7E-18 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Host cell nucleus | A membrane-bounded organelle as it is found in the host cell in which chromosomes are housed and replicated. The host is defined as the larger of the organisms involved in a symbiotic interaction. |
Expression pattern of LotjaGi1g1v0555800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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