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Field | Value |
---|---|
Gene ID | LotjaGi1g1v0561500 |
Transcript ID | LotjaGi1g1v0561500.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | SAUR-like auxin-responsive family protein; TAIR: AT4G34760.1 SAUR-like auxin-responsive protein family; Swiss-Prot: sp|O65695|SAU50_ARATH Auxin-responsive protein SAUR50; TrEMBL-Plants: tr|I3T3Q5|I3T3Q5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0561500 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:109383065..109384502) extracted from Lotus japonicus Gifu genome v1.2.
GTAATAGAGAAATTAATCAAATAAAAATTGGGTGAGTGTTGTTTTGCTATTGGGAGGACCAACATTCAACCGTGATGCCA GTGGGCTTGGTTCCCACAAACACACAAGCCCCAAAACACCCGTGGCCTCTCATCCTTAATATTGCCCCTACACTCCATAT GAACCCTCACTCTTTCTCTCTCGCTGCCTTCATTCATCATCATCAATAAATACCAACCATCACTTCTCACCACCACCACT ACCTCTAGCTACTTGTTAGTTTTTCTCTACTCTGTTTTCTTATCCATCCTTCACTTGCTTTTGAGATCACACATCCTCTC TTAACTTCTCTAACTATTAAAAATGGCAATTCAAAGGAAATCAAGCAATAAGCTTCATCTGAAGCAAATCCTGAAGAGGT GTTCAAGCTTAGGCAAGAAAAACGGTGGCTATGTCGACGACTATGGTCTCCCTCTTGATGTCCCAAAAGGCCATTTTGCT GTTTACGTTGGGCAGAAAAGAAGCAGATACATTGTCCCAATCTCCTTATTGTCTCATCCGCAGTTCCAATCCCTTCTCCG ACAAGCTGAAGAAGAATTCGGCTTCGATCACGATATGGGTCTCACTATTCCTTGTGAAGAAGTTGTTTTCCGCTCCCTCA CTTCATCAATGCTCAGATGATGAATCAAATCAAACTAAGGACTACTTGTTTGGAATTGGCTCAGCTGCTTGATGAAGATC CCAGGTGACCACCAAGATGAAGCTGCTTGCTTCTCTTTTTTTAACATCTCGATCTCTTCATCGCAGCCACCCATTCTAGT TCTCCTTGTTCCAGGATCTACTCTTTTTTGTCCATTTTTTTTCTTTGGTTTTGTTTCGAACCCCTGTTTGGGGTTTTTTT TTTCTATGATTATGTGACTAACTTTTGTCCCCACTAGCATTTGGTGGGGTGAAAATTGTATAAAGGGTTTGAGATTTTCA TCACAAAGGTTCCGTAGTATATGCCCTGAGATTGTAGTTAGTTCTGTTCACGAAAGCTGGGAATTAGTTGTTGGTTATTG CCATTTTTTGTCTCTATCTTTCTTTCTGCTTGGGGAAGAAATCATATGCAATTAGATCAAGTCAAATAGTCAAATTAAGC TTCAGATTTGTGCCCCGACATAAACAAGTTTGGCACACAATCCAAGGTATATTTAGATCCCGTAATTTTTATATATTTAG AGTTAAATAATTAATAATGTTGTTTTCACAACTCTTTTTGAGTTGAGGTAGAATGAGGAGAGAGATAAGAAAAAAAAGTA CTCCAAATAATATAAGATTGATAGATGATAAGATAAGAGAGATAGAAATAAAAATAAGTGAAAATAAGGTGTATAAAAAA TGAGTGGTAAATGTATCATTAATTCATTACTGATTTACACTCATTTTTCTCTTTCATTTCATTTCATCTCAATTTTTC
CDS sequence (LotjaGi1g1v0561500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAATTCAAAGGAAATCAAGCAATAAGCTTCATCTGAAGCAAATCCTGAAGAGGTGTTCAAGCTTAGGCAAGAAAAA CGGTGGCTATGTCGACGACTATGGTCTCCCTCTTGATGTCCCAAAAGGCCATTTTGCTGTTTACGTTGGGCAGAAAAGAA GCAGATACATTGTCCCAATCTCCTTATTGTCTCATCCGCAGTTCCAATCCCTTCTCCGACAAGCTGAAGAAGAATTCGGC TTCGATCACGATATGGGTCTCACTATTCCTTGTGAAGAAGTTGTTTTCCGCTCCCTCACTTCATCAATGCTCAGATGA
Protein sequence (LotjaGi1g1v0561500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAIQRKSSNKLHLKQILKRCSSLGKKNGGYVDDYGLPLDVPKGHFAVYVGQKRSRYIVPISLLSHPQFQSLLRQAEEEFG FDHDMGLTIPCEEVVFRSLTSSMLR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 5 | 103 | 99 | 8.7E-50 | – | |
PANTHER | 5 | 103 | 99 | 8.7E-50 | – | |
Pfam | 35 | 102 | 68 | 1.0E-28 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Biological process | Response to auxin | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an auxin stimulus. |
Expression pattern of LotjaGi1g1v0561500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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