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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0564100 |
| Transcript ID | LotjaGi1g1v0564100.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Zinc finger, B-box; TAIR: AT1G75540.1 salt tolerance homolog2; Swiss-Prot: sp|Q9LQZ7|BBX21_ARATH B-box zinc finger protein 21; TrEMBL-Plants: tr|I1JSK5|I1JSK5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0564100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:109721164..109723130) extracted from Lotus japonicus Gifu genome v1.2.
TTTAGCTCCTCTCTTTCCCTCCCTCCCTCACTCCCTCCTTTATTAGGGCATGATTTGTGTTCACAAGAGTGATTATCTGA AGTGAGCTTCTGAATCAATAAAGGAAGCAAATAAAGCAGGCCATGCCTCAAATTTCAGAAACACTCAGAATGAGAGTGAA AGCTTGTGCCATAGAATAATAGCCAAAGAGCCAACTTGCACAGTCCCTATTTAATCAAAGAAAGAGAAATGCAAAAAAGA GATAGCTATGTGTAGTATGGCATTAGTATTTTCTTTCATCCAGATTTCTCTCAAAGTCAGAAAACACTAAATACCCCTGA GCCTAGTAGCTGATCCTTCTGGACCCTAATGCCAAATCGCCCATCATTCTTTTGTCCCTTTTCCCAAGGCTTCAAAATCC AACATTCACATCCAAGAAGAGTCACATTATATTAACAGAAAAGTAAAGGAGAGAAGCCACAAGGAAAGCTCCAAGAAGAA GAGCTCTAAGGAAAAAGAAAGAGATATGAAGATCCAGTGTGATGTCTGTGACAAAGTGGAGGCCTCTGTGTTCTGTCCTG CAGATGAAGCTGCACTTTGCCATAGCTGTGATCGCGCCATCCATCATGCAAACAAGCTTGCAAGCAAACATGAGAGATTC ACTCTGCATCACCCCTCCTCCATAGACTTGCCTCTTTGTGATATATGCCAAGTACCCATCATCATTCCTTCTCTCTTTAT TAACTATGATTAATAAAAATCTAGTCTTTTCACAGTAGATTTCACTATTTCCACAGAATCCAAGTCAAACTAACAAAAAT CTAGTCTTTTTAGTACATGTTTGTTTCCACAATTCACATAAAATCCAAATCACAATTAGTCAAAAGTTATTGTATGTTTG GTTCTAGGGTGGTATACTTTGCAACCACTTCTGGTTAGAAGTTACGAGTCTTAAATTCTGAGTAAATACGTCTTGGATTT TGTGCAAATCATGGAAACAAAAATCAACTAAGATATGTAACTTCTAACAAGAAGGAAAGCATTTCATCATAGAAACAAAC ATCCAACTAAGTGATTAGATAAGCTTCTATTTCCTCATAATCTATTCTGGCACCTAGAAGCTTTCAAAATAGATCATGCC TTCATAATCAATTGTATATGAACCGCCAAAATAACTATATTTTTGTTTCAGGAGAGAAGGGCGTGTCTATTTTGCCAAGA AGACAGAGCAATTCTTTGCAGAGAATGCGACCTTTCTATCCACAGAGCCAATCAACACACCCAGAAACATAACAGGTTTC TTCTCACGGGCTTGAAGCTCTCCAACACATGTTTGGACTCAGATTCATCGTCCACGGACAGAATCACTGTCTCTTCTGAA GCCAGAAACTCTCGATCCAGCAAAGCAAGCAGGCCTAGATCAGGTTCAAATGAAAATGCCTGCTCTTCTTTGAGGTTTGA AGATAACATGGCTAGTGACACTGGTTCAGCTTCAACAAGCAGCATTTCTGAATACTTGATTGAAACAATCCCTGGTTACT GCTTCGAAGATTTTCTTGATGCATCGTTTGCACCTAATGGTTTCTGTAAGGTTTGCTGTAAACCCTGTGATTATGTTTTC TATATCTAAGAGAATGAGACCAGAGTCTTATTTTTTTTCCTGGGATTTAACAATGTTTAACTGTGTTTGTTGTTGCAGAA CTATGATTATCATTCAGGCTTCCAAGCTCAAACTCAAGTTCAATCCCCTCAACTTAGCCATTCGAGTCTTCTTCTCCAAA ATGGCTACTGTACAGTTCCTGTACCTAGTCCTCCTTTCATGAAAAAATCTAGAAGCTCTAGATAATCACCTAATTGTAAA AAACTGTTGGAAAGTATCCTCTTTATTTTGTTTTCTGCATTTCTTTACAAATTAATTAGTGTTACTTTTTGGTTCTCTAC TTCTCTGCTATCATTTATTATTTGTCTTCCAATCTACTTGTTCGAGC
CDS sequence (LotjaGi1g1v0564100.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGATCCAGTGTGATGTCTGTGACAAAGTGGAGGCCTCTGTGTTCTGTCCTGCAGATGAAGCTGCACTTTGCCATAG CTGTGATCGCGCCATCCATCATGCAAACAAGCTTGCAAGCAAACATGAGAGATTCACTCTGCATCACCCCTCCTCCATAG ACTTGCCTCTTTGTGATATATGCCAAGAGAGAAGGGCGTGTCTATTTTGCCAAGAAGACAGAGCAATTCTTTGCAGAGAA TGCGACCTTTCTATCCACAGAGCCAATCAACACACCCAGAAACATAACAGGTTTCTTCTCACGGGCTTGAAGCTCTCCAA CACATGTTTGGACTCAGATTCATCGTCCACGGACAGAATCACTGTCTCTTCTGAAGCCAGAAACTCTCGATCCAGCAAAG CAAGCAGGCCTAGATCAGGTTCAAATGAAAATGCCTGCTCTTCTTTGAGGTTTGAAGATAACATGGCTAGTGACACTGGT TCAGCTTCAACAAGCAGCATTTCTGAATACTTGATTGAAACAATCCCTGGTTACTGCTTCGAAGATTTTCTTGATGCATC GTTTGCACCTAATGGTTTCTGTAAGAACTATGATTATCATTCAGGCTTCCAAGCTCAAACTCAAGTTCAATCCCCTCAAC TTAGCCATTCGAGTCTTCTTCTCCAAAATGGCTACTGTACAGTTCCTGTACCTAGTCCTCCTTTCATGAAAAAATCTAGA AGCTCTAGATAA
Protein sequence (LotjaGi1g1v0564100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKIQCDVCDKVEASVFCPADEAALCHSCDRAIHHANKLASKHERFTLHHPSSIDLPLCDICQERRACLFCQEDRAILCRE CDLSIHRANQHTQKHNRFLLTGLKLSNTCLDSDSSSTDRITVSSEARNSRSSKASRPRSGSNENACSSLRFEDNMASDTG SASTSSISEYLIETIPGYCFEDFLDASFAPNGFCKNYDYHSGFQAQTQVQSPQLSHSSLLLQNGYCTVPVPSPPFMKKSR SSR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 206 | 206 | 1.2E-94 | – | |
| Gene3D | 1 | 98 | 98 | 1.1E-8 | – | |
| PANTHER | 1 | 206 | 206 | 1.2E-94 | – | |
| ProSiteProfiles | 1 | 47 | 47 | 10.978 | ||
| CDD | 3 | 47 | 45 | 1.24708E-6 | ||
| SMART | 4 | 47 | 44 | 1.1E-7 | ||
| SMART | 53 | 100 | 48 | 3.2E-13 | ||
| ProSiteProfiles | 53 | 100 | 48 | 10.096 | ||
| Pfam | 56 | 92 | 37 | 8.8E-7 | ||
| CDD | 56 | 100 | 45 | 2.04915E-9 | ||
| MobiDBLite | 110 | 144 | 35 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi1g1v0564100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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