Transcript — View — Lotus Base

Overview

Field	Value
Gene ID	LotjaGi1g1v0574300
Transcript ID	LotjaGi1g1v0574300.1
Lotus japonicus genome version	Gifu v1.2
Description	DUF3527 domain protein; TAIR: AT5G01030.1 enolase, putative (DUF3527); Swiss-Prot: sp\|Q8N9B5\|JMY_HUMAN Junction-mediating and -regulatory protein; TrEMBL-Plants: tr\|A0A0B2PZP7\|A0A0B2PZP7_GLYSO Uncharacterized protein; Found in the gene: LotjaGi1g1v0574300
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr1:110866403..110871125) extracted from Lotus japonicus Gifu genome v1.2.

CGGAACTTTAAATTCCGTATTTGATAAAGTGGGGTGCCAAGCCCCATAGGTGGGGTGCCAAACCCAACTCCCTGTTCCAC AGTGTACAAAACGCATACTTTGTGTATAATAATGCAATATACAAATACGAAGAGCAAAAAAGAAAACATGATCATGATGA TGAACATGGTGGAGCAATGATCCCATTACCTTACAGAGTGCCGCCACCATTGATTTCCACTTCTTTGCTTCGCTTCCACT CTAACTCCTCCTTCTATTTCCTCACCGATCTTCATCGGGATCTCCAAAACCAGTCCACTCTTTCTCGCGTTTTGCCGCCA TAACATACCCACGTGGATTTCCCACTTTCTACCTTTTTTTGGTTTTCTGGTAGGTAAGTTCTCTCCTTGATTCTTCAGAA AATTCTGCTCATTTTGGTTGGATGCTGCTCTTTGCAACTAGTATCTTCTTTCTAGGTATTATGTGAACATACAAATGATT CATGGGTTGAAAGGAAAGTTCTTAAGTCACTGCTTTTGCCTTTTGGGTTCTATCTTTTCATTGGAAATGTGGGTTTTGTT GGTCTTGGTTTTTGGAGATGAGAGTGCTTAACTTTTTTTTTTGGTTATTGCATCTTTCTTTCCCATGGCAGCAAAACAGG GATGAATTCTCTGATGTCATTGATGAGTTATGATTCTGTTTCCTATGGTTGACCAGCGTTGACAAAACAATCCCATCGTT TTACAAATTGATTATCAAATGCAACAACTTCTGTGGCCCTCTGTTTGCTCTGTTTTGCGTTTGTGTTCTGTTTTGGGTTC TGCCATGACATAATATCATAGGATTTAGCATTGATTTTTGAACCATTTAGTCTTTCGTTAATGGATGAATGGTTTTGCAT AGCCAGTCCTAAGCCGGAGTAAAGGAGAAAATTTGTGCATATCTTTATTTGTATATGTGATCCATATAGCCGATCTCACC GGGTGGGATAAGACCTTGGTTACGGTGCGGTTATGGTATTGAATATATATCATGGCCTGACTATATGTCACCATGTTTTT TTAAATGTACTAAGCCTTAACTCTGTTATGTTTTCAATGTGGGAGGGAGTCTCATGCTGTTCTGCTTATGCACATAAACT ATTATTGCTTTGCTGTGAATTGTAAATTTATATGGTAGTAGCCTTATGTGATGTCGTTGAATTGCTTTGGATTCTGTCAA AAGTTCGTTCTGTTAAATCTTTATCCTGGGAATTCTAATACATGCACCATATTTTTGTATTCCTTTTTCCTTTGTTTACC ATTTGATTAATTGATTGAAATGTTAAAATTTCCAGATAGCTAGTCGTTTGATCAAGGAAGAAACTCCTCTGCCTTATGAG CTTACAAGAAGTGAAATCTGAAAAAATATTTTGCCATGCCATTCAATTACAATATACACCCAAGTAATGAGTTGTTTAAA CCCTCTGATGATCTGTGGTTCAGTGGAGACGCTAGAAAGATCAATTCAAAACGGCAAAGTAGCTTGAAATCAGCAAAGGA GAGCTCTGCTAGGCCCCAATCCTATCCATGTCCAAGGGATCAAAATAAATTGAAATCAAAGTCCAATTTTGATCCTTGCC ATGAAGAAAAGCTGGATACATTAGGGGAGATTTTTCGCCGGGAGAGCGTGAACGGAAGCTCAACGCAACATGATGAGCTT GTTAAGCATATGTCTAATTTGCCAAGTTTTCTCAAAGGTTCTTCTGATAGAGGAAAAAACATTCAAGGGAAGGCTTTAAA TGTCGGGGTTCTTGATTGGTCACGACTCGAGAAATGGAAGAACAAGAGCAGTGAAGAATCATCATCATCATCAAGGGCTG CCACCACATCATCTACTACAACAAGAGGCCATAAAAAGCATGGCGATCGAAAAGGTTCACGTTCTTCAAGTGTCAAGGGA TCTTATAAAGAAGGCCTTACTGAAAGTTCCAAACAGCATTCTCAGAATGTAAAAAGATATCAACATTCTGAAACTGAAAT AAGGACTCTTGGAGATGAGCTCAGAATGACAGCCTTTGAATTTCAGTCCATTGGGAAGACTCACTTAGATAAATCACTTC AAAAGGAGAAAAGGAGCGACCAAGATAATGTAAGGAATTTTGCATCAGAGTCCACGCATCACGGGGTCTCACTAGTTCCT AATGAAAATTCAAATGGTTGGGATTTTGAAGCTCAGAATAGCATGGGGGGTTTGAAACAGCATTGCCTCAAGAAACGGGA GAGAAATCTCAACTCCATTTCTCATAAGGGACTTCCATCTTTAGAATCAAAATACAAAGGTAGCTCATTTAGTTCTCAGA ATAAAATGTCAAGTAAAGCCAAGAAAAATATGGATGAAGTTCAGGAGACAGATTTTGATGTTGGTTATAAACAATACCGT GGCATGCCTAGTAATATTGTGCTCCTTCGTCCCCGGAAATTCCTGGAATCGAGTTCTGAAGATTATTTTCAGCTTTCTCA GTCAAGAACTTCATCAGATGAAATTTTTTCAGAATCAAGCCAGAGTAGTTCATCCTATGTTTCCCTTTACGAGGAGGTTT ACACTGAAGATGTATCTTCTGAAGCTTCACATTTAAGTGTACTGCATTCTGTGACTAATCTCGCTTCTTCAAGAACAACA GAACACACTGCCAATGCTGATCTAGATCATTCTTCACATTCAAATGAGATGTCTAGTCTCACATCAGAAGATAATTGCAT TGAAAAGGATATCTCGGACATCAAGCTAAGAAATCAGTGTTCTTTCACTAATATGAATGAACCACAGGACCATGAAACTG CTGAGCAGACAACACTGAATGCCTGGAATTCCTCTTCTCAACCTCGTCTCGGCTTCGGCTTAAATCGGATTGGAAGAAGC TTCAGTTTCAAGGAAAGTTCTACCCTTCCAAAACATAGCTCCAAGGATGTTAGTGCTAAGTCTGGTCCATTGACATTTGA ACCTTCTGGTTATTTGGACAATTCAACAACCGGTCACAACAGAACCAGGTCCTACGGCTCCTTTCGGAGGTTATTAGACC CCATATTGAAGCATAAGGCATCAAACATTCACCATTCAGCTGAATGCAGTCCGGCAAGAAGCATGAATCTTCCTGCTGAA AAAGGCAAGGAGTCATCAATTCAAGCCTTTTTGCAGCTAACAATAAAAAATGGACTACCATTGTTTAAATTTGTGATCAA CAGTGAAAGAAAGGTTCTTGCAGCTACCATGAAAAGCTTGGAGAAGGATGGTGTAGGCTGCTATTTCACATTCTACCTCG TTAATGAAATTAAGAAAAAAGGCGGTAAATGGGTGAATCACTGGAATAAAGAGAAAAACTGTGGATATGAATACAAAGTT GTTGGTCAGATGAAGATTTCTAGCTCTAGAATCACTGAGTCAAGTGATCAGACCAAGTGTGTGGAAAAAGATTATGTTCT GTTCAGCGTTGACGTCGACCAAGGACCCCCAGATTTTACCAAGAGCAAGGAGCTTGCAGCTGTTGTTATGGAAACCCCTT GTGAAGATGCAAGTCATGAAGGACTCTATAGTGATAATTTGCAGAAGATGGGATGCTTAAAATGCTTGGAAGATGAAATA TGCTTTTGCAGCTCACAAGAAATTGATATCCCTGGTAGAATTACAGTTATACTTCCGGGTGGTGTGCATAGTTCACCAAG CAAAGGAGAACCTTCGCCGTTGATCCATCGATGGAAAATGGGGGGAATTTGTGATTGTGGAGGTTGGGATGTTGGATGCA AACTTCTTGGCCTCTCTAACAAGTACCACAGTTCAAATGTTCCAAGAAGTTTAAAATCTTACCTTGAGAGATTTCAACTT TTTGTTCAGGTATACTTTTACTATTCCACCTGAGCCCATATTGAGTACATGCATGTTTGGAAACTCGTTCAAAAACCACG CTGAAGTCAAAACCATGGTGGACATAAGCTAATTCCCTTAGCTTTTGCTTTTGTCCACCATGATATTAGCTTCACCGTGG TTGTCGAACAAGTTTCTTGATAAACACTATCTGCAATTGTAAGTATTGTGGATACTGGATAGCTCATTTTACCTCATTCT GGACAAAACTTTCAGGAAGGAGCTGAGCAAAACACATCCCTATTTGCCTTGGCGCCTTTGAAGGATGGATTCTACTCAGT TGAGTTCAGTTCAAGAATCAATCATTTGCAGGCATTCTTCATTTCTATTGCGGTTTTAAACAGCCAGAAAGTATCAAGTT CCTTGGAAACTGGTTACAAGCCAGAAGAGATCAATAGGGAACTTCAGGTGAAAGCACGTTTACATTATAATCCAATTCCA CCACTCTCCCCTGTTGACAGAGTTTAAGTTCAGAAAGTGGAGGCTCTTCCAGCAAATCATAGTAAGCTGTTATATAAATC ATTGTATTATTGTATCATTGTACAAAAGAACCACAGCACCTATAGCATATTATTTACAAAGCACAATATGAATGAATGAA TAAATAACCAGTAGGTTTATCCAAGTCAAAAACATGAGCATTGTGAAACCGAACAGCTGAAACTCTAATATGATAAACAA AATGATATGAGGCTGTGCCTTCAGTAGTAACTCTGATGACCTGCATTAATTGGAAGTGTATGCTTCCAAGTTTGTGCTAC AGCATTGTAATAAAATTTCGACATATGATTTGATGCTTCATGGGGGTGATTCTTATAAGATTAAGAAAACCAAAGATTGT TAC

Download Genomic Sequence

CDS sequence (LotjaGi1g1v0574300.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGCCATTCAATTACAATATACACCCAAGTAATGAGTTGTTTAAACCCTCTGATGATCTGTGGTTCAGTGGAGACGCTAG AAAGATCAATTCAAAACGGCAAAGTAGCTTGAAATCAGCAAAGGAGAGCTCTGCTAGGCCCCAATCCTATCCATGTCCAA GGGATCAAAATAAATTGAAATCAAAGTCCAATTTTGATCCTTGCCATGAAGAAAAGCTGGATACATTAGGGGAGATTTTT CGCCGGGAGAGCGTGAACGGAAGCTCAACGCAACATGATGAGCTTGTTAAGCATATGTCTAATTTGCCAAGTTTTCTCAA AGGTTCTTCTGATAGAGGAAAAAACATTCAAGGGAAGGCTTTAAATGTCGGGGTTCTTGATTGGTCACGACTCGAGAAAT GGAAGAACAAGAGCAGTGAAGAATCATCATCATCATCAAGGGCTGCCACCACATCATCTACTACAACAAGAGGCCATAAA AAGCATGGCGATCGAAAAGGTTCACGTTCTTCAAGTGTCAAGGGATCTTATAAAGAAGGCCTTACTGAAAGTTCCAAACA GCATTCTCAGAATGTAAAAAGATATCAACATTCTGAAACTGAAATAAGGACTCTTGGAGATGAGCTCAGAATGACAGCCT TTGAATTTCAGTCCATTGGGAAGACTCACTTAGATAAATCACTTCAAAAGGAGAAAAGGAGCGACCAAGATAATGTAAGG AATTTTGCATCAGAGTCCACGCATCACGGGGTCTCACTAGTTCCTAATGAAAATTCAAATGGTTGGGATTTTGAAGCTCA GAATAGCATGGGGGGTTTGAAACAGCATTGCCTCAAGAAACGGGAGAGAAATCTCAACTCCATTTCTCATAAGGGACTTC CATCTTTAGAATCAAAATACAAAGGTAGCTCATTTAGTTCTCAGAATAAAATGTCAAGTAAAGCCAAGAAAAATATGGAT GAAGTTCAGGAGACAGATTTTGATGTTGGTTATAAACAATACCGTGGCATGCCTAGTAATATTGTGCTCCTTCGTCCCCG GAAATTCCTGGAATCGAGTTCTGAAGATTATTTTCAGCTTTCTCAGTCAAGAACTTCATCAGATGAAATTTTTTCAGAAT CAAGCCAGAGTAGTTCATCCTATGTTTCCCTTTACGAGGAGGTTTACACTGAAGATGTATCTTCTGAAGCTTCACATTTA AGTGTACTGCATTCTGTGACTAATCTCGCTTCTTCAAGAACAACAGAACACACTGCCAATGCTGATCTAGATCATTCTTC ACATTCAAATGAGATGTCTAGTCTCACATCAGAAGATAATTGCATTGAAAAGGATATCTCGGACATCAAGCTAAGAAATC AGTGTTCTTTCACTAATATGAATGAACCACAGGACCATGAAACTGCTGAGCAGACAACACTGAATGCCTGGAATTCCTCT TCTCAACCTCGTCTCGGCTTCGGCTTAAATCGGATTGGAAGAAGCTTCAGTTTCAAGGAAAGTTCTACCCTTCCAAAACA TAGCTCCAAGGATGTTAGTGCTAAGTCTGGTCCATTGACATTTGAACCTTCTGGTTATTTGGACAATTCAACAACCGGTC ACAACAGAACCAGGTCCTACGGCTCCTTTCGGAGGTTATTAGACCCCATATTGAAGCATAAGGCATCAAACATTCACCAT TCAGCTGAATGCAGTCCGGCAAGAAGCATGAATCTTCCTGCTGAAAAAGGCAAGGAGTCATCAATTCAAGCCTTTTTGCA GCTAACAATAAAAAATGGACTACCATTGTTTAAATTTGTGATCAACAGTGAAAGAAAGGTTCTTGCAGCTACCATGAAAA GCTTGGAGAAGGATGGTGTAGGCTGCTATTTCACATTCTACCTCGTTAATGAAATTAAGAAAAAAGGCGGTAAATGGGTG AATCACTGGAATAAAGAGAAAAACTGTGGATATGAATACAAAGTTGTTGGTCAGATGAAGATTTCTAGCTCTAGAATCAC TGAGTCAAGTGATCAGACCAAGTGTGTGGAAAAAGATTATGTTCTGTTCAGCGTTGACGTCGACCAAGGACCCCCAGATT TTACCAAGAGCAAGGAGCTTGCAGCTGTTGTTATGGAAACCCCTTGTGAAGATGCAAGTCATGAAGGACTCTATAGTGAT AATTTGCAGAAGATGGGATGCTTAAAATGCTTGGAAGATGAAATATGCTTTTGCAGCTCACAAGAAATTGATATCCCTGG TAGAATTACAGTTATACTTCCGGGTGGTGTGCATAGTTCACCAAGCAAAGGAGAACCTTCGCCGTTGATCCATCGATGGA AAATGGGGGGAATTTGTGATTGTGGAGGTTGGGATGTTGGATGCAAACTTCTTGGCCTCTCTAACAAGTACCACAGTTCA AATGTTCCAAGAAGTTTAAAATCTTACCTTGAGAGATTTCAACTTTTTGTTCAGGAAGGAGCTGAGCAAAACACATCCCT ATTTGCCTTGGCGCCTTTGAAGGATGGATTCTACTCAGTTGAGTTCAGTTCAAGAATCAATCATTTGCAGGCATTCTTCA TTTCTATTGCGGTTTTAAACAGCCAGAAAGTATCAAGTTCCTTGGAAACTGGTTACAAGCCAGAAGAGATCAATAGGGAA CTTCAGGTGAAAGCACGTTTACATTATAATCCAATTCCACCACTCTCCCCTGTTGACAGAGTTTAA

Download CDS Sequence

Protein sequence (LotjaGi1g1v0574300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MPFNYNIHPSNELFKPSDDLWFSGDARKINSKRQSSLKSAKESSARPQSYPCPRDQNKLKSKSNFDPCHEEKLDTLGEIF RRESVNGSSTQHDELVKHMSNLPSFLKGSSDRGKNIQGKALNVGVLDWSRLEKWKNKSSEESSSSSRAATTSSTTTRGHK KHGDRKGSRSSSVKGSYKEGLTESSKQHSQNVKRYQHSETEIRTLGDELRMTAFEFQSIGKTHLDKSLQKEKRSDQDNVR NFASESTHHGVSLVPNENSNGWDFEAQNSMGGLKQHCLKKRERNLNSISHKGLPSLESKYKGSSFSSQNKMSSKAKKNMD EVQETDFDVGYKQYRGMPSNIVLLRPRKFLESSSEDYFQLSQSRTSSDEIFSESSQSSSSYVSLYEEVYTEDVSSEASHL SVLHSVTNLASSRTTEHTANADLDHSSHSNEMSSLTSEDNCIEKDISDIKLRNQCSFTNMNEPQDHETAEQTTLNAWNSS SQPRLGFGLNRIGRSFSFKESSTLPKHSSKDVSAKSGPLTFEPSGYLDNSTTGHNRTRSYGSFRRLLDPILKHKASNIHH SAECSPARSMNLPAEKGKESSIQAFLQLTIKNGLPLFKFVINSERKVLAATMKSLEKDGVGCYFTFYLVNEIKKKGGKWV NHWNKEKNCGYEYKVVGQMKISSSRITESSDQTKCVEKDYVLFSVDVDQGPPDFTKSKELAAVVMETPCEDASHEGLYSD NLQKMGCLKCLEDEICFCSSQEIDIPGRITVILPGGVHSSPSKGEPSPLIHRWKMGGICDCGGWDVGCKLLGLSNKYHSS NVPRSLKSYLERFQLFVQEGAEQNTSLFALAPLKDGFYSVEFSSRINHLQAFFISIAVLNSQKVSSSLETGYKPEEINRE LQVKARLHYNPIPPLSPVDRV

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR31390 View details on PTHR31390 Search for proteins/transripts with this domain View external data on PTHR31390	26	901	876	0.0	–
PANTHER	PTHR31390:SF13 View details on PTHR31390:SF13 Search for proteins/transripts with this domain View external data on PTHR31390:SF13	26	901	876	0.0	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	32	67	36	-	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	36	58	23	-	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	136	199	64	-	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	141	156	16	-	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	173	189	17	-	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	299	313	15	-	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	299	319	21	-	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	412	436	25	-	–
Pfam	PF12043 View details on PF12043 Search for proteins/transripts with this domain View external data on PF12043	582	685	104	7.4E-12	IPR021916 Show description in modal box View details on IPR021916 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF12043 View details on PF12043 Search for proteins/transripts with this domain View external data on PF12043	693	862	170	2.3E-34	IPR021916 Show description in modal box View details on IPR021916 Search for proteins/transripts with this domain View on EBI InterPro Service

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

Unable to find any GO terms for the transcript with the identifier.

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0574300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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LotjaGi1g1v0574300.1