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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0585200 |
| Transcript ID | LotjaGi1g1v0585200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cyclin; TAIR: AT5G06150.1 Cyclin family protein; Swiss-Prot: sp|P25012|CCNB2_SOYBN G2/mitotic-specific cyclin S13-7; TrEMBL-Plants: tr|I3S1U1|I3S1U1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0585200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:112464380..112465661) extracted from Lotus japonicus Gifu genome v1.2.
AGGCTAAGAAACCCAAGGAACATATTGTTGAGGACATTGATGCCGGTGACACTAACAACGAGCTTGCTGCTGTGGAATAT GTTGAAGACATGTACAAGTTCTATAAGAGGGTTGAGGTACCAATTAATCTATCATGATTCCCTTGAATAATGTTGTTTCA TTCATTTTTCATCAATCAAGTGTTGTTGCGTCTGATGTATGTGTTGGTATTCTATTTCAGAATGAGAGGCGTCCCTATGC CTCATACATGGAGTCACAGCCTGAGATAAATGAGAAAATGAGGGCTACCCTTGTTGATTGGCTGGTACTTGTTCACACCA AGTATGAGTTTTCACTTGAAACCCTCTACCTCACCATCAACATAATTGATCGGTTCCTTGCACTCCAGATTGTGCCAAGG AATGAACTGCAATTGGTTGGCATCACTGCCATGCTCATGGCATCGAAGTATGAAGAAATTTTGGCCCCTATGGTGAGTGA GTGTTGTGTATATGAAATTGCTGCCTTGATTTCAACAAGTTCACTACAAATTGGACACAAATAACACTTCTTGTCTTTTG TATAGGTTAATGACCTTGTCTTGCTCTCAGACGGAGCTTATTGTCATCAACAGATACTTGAGATGGAGAAAATCATACTG AGAAAGCTGGAATGGAACTTGAGTGTGCCTACACCATTTATTTTCCTAGTTCGTTTCATCAAGGCTTCCTCAGTTCCGGA TCAAGATGAGGCGGTGCAAAACATGGCCTGTTTTCTTTGTGAGTTGGGGATGATGCATTATGCTACCATGAAGTATTGCC CATCAATGATTGCTTCCTCAGCAGTGTTTGCAGCTAGGCGCACTCTCAACAAGAGCCGTGCTTGGAATCACACACTTAAG CTGCACACTGGTTACTCACAACAACAGCTTATGGATTGTGCTACACTCTTGGTGAGCTTTCATTGCATGGGTGGGAATGG GAAGCTCAAGGTTGTGTACAATAAGTACTGCGAACCTCAAAGAGGAGCTGTTGCGCGGCTTCCACCAGCTAAAAATCTAC TGACTTTAGAGGAGAGGATAGAGAGGATACACATTGATGAGAACATAGAAAAGAAAAAAAGGAAGATGTTGTAAATGCTG CATATTTTATTGTTTTTCCTTTTCAATTTTTTACAAGTCCAGTGCCTCTAGAGAAGAGGATAGAGTTTTCATGACAAACA ACTCCTTAGTAGAGATTAACAAAATTCGATTCATAAGCTTTCTCATTTTTTTCCTTCTTTAAGTCCCATTGAAATCTTAT TG
CDS sequence (LotjaGi1g1v0585200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTACAAGTTCTATAAGAGGGTTGAGAATGAGAGGCGTCCCTATGCCTCATACATGGAGTCACAGCCTGAGATAAATGA GAAAATGAGGGCTACCCTTGTTGATTGGCTGGTACTTGTTCACACCAAGTATGAGTTTTCACTTGAAACCCTCTACCTCA CCATCAACATAATTGATCGGTTCCTTGCACTCCAGATTGTGCCAAGGAATGAACTGCAATTGGTTGGCATCACTGCCATG CTCATGGCATCGAAGTATGAAGAAATTTTGGCCCCTATGGTTAATGACCTTGTCTTGCTCTCAGACGGAGCTTATTGTCA TCAACAGATACTTGAGATGGAGAAAATCATACTGAGAAAGCTGGAATGGAACTTGAGTGTGCCTACACCATTTATTTTCC TAGTTCGTTTCATCAAGGCTTCCTCAGTTCCGGATCAAGATGAGGCGGTGCAAAACATGGCCTGTTTTCTTTGTGAGTTG GGGATGATGCATTATGCTACCATGAAGTATTGCCCATCAATGATTGCTTCCTCAGCAGTGTTTGCAGCTAGGCGCACTCT CAACAAGAGCCGTGCTTGGAATCACACACTTAAGCTGCACACTGGTTACTCACAACAACAGCTTATGGATTGTGCTACAC TCTTGGTGAGCTTTCATTGCATGGGTGGGAATGGGAAGCTCAAGGTTGTGTACAATAAGTACTGCGAACCTCAAAGAGGA GCTGTTGCGCGGCTTCCACCAGCTAAAAATCTACTGACTTTAGAGGAGAGGATAGAGAGGATACACATTGATGAGAACAT AGAAAAGAAAAAAAGGAAGATGTTGTAA
Protein sequence (LotjaGi1g1v0585200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MYKFYKRVENERRPYASYMESQPEINEKMRATLVDWLVLVHTKYEFSLETLYLTINIIDRFLALQIVPRNELQLVGITAM LMASKYEEILAPMVNDLVLLSDGAYCHQQILEMEKIILRKLEWNLSVPTPFIFLVRFIKASSVPDQDEAVQNMACFLCEL GMMHYATMKYCPSMIASSAVFAARRTLNKSRAWNHTLKLHTGYSQQQLMDCATLLVSFHCMGGNGKLKVVYNKYCEPQRG AVARLPPAKNLLTLEERIERIHIDENIEKKKRKML
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PIRSF | 1 | 260 | 260 | 3.0E-122 | – | |
| Pfam | 1 | 126 | 126 | 1.3E-42 | ||
| PANTHER | 1 | 251 | 251 | 4.1E-124 | ||
| PANTHER | 1 | 251 | 251 | 4.1E-124 | – | |
| Gene3D | 2 | 242 | 241 | 1.6E-86 | – | |
| SUPERFAMILY | 2 | 125 | 124 | 5.1E-44 | ||
| Gene3D | 14 | 126 | 113 | 1.6E-86 | – | |
| CDD | 29 | 118 | 90 | 8.92973E-20 | ||
| ProSitePatterns | 30 | 61 | 32 | - | ||
| SMART | 35 | 119 | 85 | 1.2E-21 | ||
| CDD | 126 | 216 | 91 | 1.62249E-14 | ||
| SUPERFAMILY | 127 | 249 | 123 | 2.38E-35 | ||
| Pfam | 128 | 247 | 120 | 9.9E-32 | ||
| SMART | 128 | 248 | 121 | 4.1E-33 | ||
| SMART | 132 | 217 | 86 | 9.1E-18 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Host cell nucleus | A membrane-bounded organelle as it is found in the host cell in which chromosomes are housed and replicated. The host is defined as the larger of the organisms involved in a symbiotic interaction. |
Expression pattern of LotjaGi1g1v0585200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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