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LotjaGi1g1v0590900.1

Overview

Field Value
Gene ID LotjaGi1g1v0590900
Transcript ID LotjaGi1g1v0590900.1
Lotus japonicus genome version Gifu v1.2
Description F-box protein interaction domain protein; TAIR: AT3G23880.1 F-box and associated interaction domains-containing protein; Swiss-Prot: sp|Q9LIR8|FBK67_ARATH F-box/kelch-repeat protein At3g23880; TrEMBL-Plants: tr|A0A1J7G5U0|A0A1J7G5U0_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0590900
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:113082244..113087106) extracted from Lotus japonicus Gifu genome v1.2.

GTCTTGTAAGCGATTTGATTTTAACTTTCACATAAATTGATCAATTAACTCCAGCTACTTGTTGTCTTGTTCATCATCCA TTTCATTTCACTCTCGCAAATGACGCTTCCGCTTCCGCTTCCGCTTCCATCTCTTCCGTTCGACCTCATCGAGGAAATCC TGTGCAGGCTCCCGGTGAAGCCGCTGCTGCGATTCCGCTCCGTTTGCAAGTCCTGGAATTCCCTAATCTCCGATCCCATG TTCGCCAAAATGCACCTCCGCTGTTCGCCGACGGACTTCACCCGCCACCACCTCATCTTAAGCGGCACCAACTCCTCCTC ACGGATTATCCACTCCTCTCCGTTTTCAATGCCGCCGCTGCCACTCAGCTCGAGTTCAACAATCGCAACCGTTTAGATTC AATCATTGGCTCTTGCGATGGCATCCTCTGTTTGTCGATCAAGCAAAGGAGCTTTGCTCGCTCTGCTGTTCTGTGGAACC CTTCCACTCGGAGATTCAAAAACTTGCCGCCATTGGAGAATCCACAGCTTCAAGGTAGTTTCACGTTATTCGGATTTGGT TATGATAATCTTGCTGATCGTTACAAAGTAGTTGCTGTTTTCTGCTATGATAAAACTGATCCTGGGCCTGTGGGTTATAG AAAATATATATCTCATGATGATGGTGAGTTTTGCAAAACACAAGTGAAGGTTCATACTTTGAGTACAGATTCTTGGAGGG AGATTCAAGACTTCCCTTCATGTTTCCCTTCTTATCGTCAAACAGGAAGATTTGTGAGTGGAACTGTTAATTGGTCTGCA TCTAATCAGTCGAGCTGGTTTATTATTTCTCTTGATTTGGGGAAGGAGAGTTATCGAAAACTTTCACCCCCTCATTGCGA TGGAATGATTTGGTGTTTGGAGGTTTTAAGGGATTGCTTGTGTATCCTTTATGGCGATTTATATGTTTGTGATGTTTGGC TTATGAAGGAGTATGGCAATCAAGAGTCTTGGACTAAATTATTCAGTGTTCCTAGCCCGAGGGAGCTATTCGCCTATGAT TCGGCACTTCATATTTCTGAGGATGACGAAATACTGCTGATGTTCAATTCAAACTTATTTCTCTACAATTCCAAAGACGG CACTTCAAGAAGTCCCCAAATTCAAAACATCCTTGGTTGGATAGTCCCAGAGGTCTATGTAGAAAGTTTGATATCACCTT AATCTGGATACTACAATGTAAATACAGTTGATAAGCAGTGCATTTTATAGTTGATAATAACCTTGATAGAGTTGATAGGT AGACATTAATATAGGTTGTTAAGCAGTACATTATATAGTTGACAATAGCCTTTATAGCAATTACCATTTGATTATAACAT AGGTTTGCTTCAGACTTACTTCTAAGTTCTAAGTTTGATTGTATAACCCTTACTCTGATAGTTAGGGAGTTACTTTGTTT TTAAGTTGCTCCTGCTATTAGCAAAGCATTATCTGGTACATTATTGATTATATATGAAATAATTTATTTTATTTTCATGT ATTTAAAAGAATGCATGTTCTGTTTTCCTATTTCTTCTTGATTTTAATTATCTTCTTTGATAGCCAAAGATTTATTCCGA TCTAGTCACACCAGATGATGACCCTCCTTTGGCTAGTTTGGCTAGATTGCTATGTCAGCTGCAACAGCTACTATTTGAAT GCAATTTTTTTAGAGAAGGTCCTGCATCAGTTACTTTAGAGAAGGTTCTGCTTTTTTTCAAGTTGCAGATTTTTGTAATC GTGAAACTTTATAGATTTCATGAGTCAAGTAATGAATTGATAAAGGAACCAGATATTGATTTTGTTCTTAGTAAGCAAAA CCAGATATTGTCAAATGCCTTAGTTCTTTATTAGTTTAACATTAAAATTTGGAAGTAACCACTATAGAAAGGAACGACTT GTAAGCTTATTAGTTTAATATTAGCTGATTTTTTAAGGGTAGTTTAATATTAGCTGATAGACATCAGCTTATTACCTTTT GTTTCTATGTAATCATTAGTGTAAGTAGAAACCAATTTGCTCCAAAGTTTTCTATGACAAACAATCTGCTCAAATTAGTA AAAAATCATTTTGCTATGCTTTTAAATGTATGGAAAGTTATTATGGCTACTATAATGATAATCCACTGTAATAATTCAAG CTGCATCTAAGTACTCATTTATAGATTAACCTCCCATATGTCATATTTCTTAGAGCATCGAAGTTCCAGGAGTCCAGGAC CCTTATTAGTTGATGGTCTGTTATATTCTGATCAACACAAACATTAAAGATGCCCCTTGCAATATCCTTTATACTGTCAA CAAACCCCCTCATGAATAGTAAATACTAAATAGAGGTAATAGAAAGAATTACCGCTTGAACAAGTCTGCCAGCACTTCCC TTTGGTTCCTTCCAACATGTCATTGCAAGCTAACTTCTTTATTTGGTCCTGGAGTAAATCACTGATTTTTCATCTCTTCC CTTGAAGTAAGTGAGTGACGACCATTTTTAGTTCTTCTGATAACTGTTGTCTACATTTGCGTGTGTTTTTGGTACTCTGT GAACCCCTTCTTCATCCTTTCCATTTGCATTCATCCTGAAAGATCATGAAGAATGGATGGCTGCTACCTTACCATCCTCT CCAGGTGGGTTTCAAGTTTTAATGTTTATTTGTTTTCTTTTTTTGCAGAACTTTTTTTGTGGGGTTTGTAATTTTAAGAA TTGTTTGTTGTGAAGGTGGTGGCCTTTGTTGTATTTTTGGCCCTGGGATTCATGTTCTATGGGTTCTTTGCTCCTTTTGT TGGGAAGAAGGTGTATCAGTATATTGCTATGGACCTCTAGACACCCCTGGTAACTGAATCTTCAAGCCTTGTCTTCTTTT TTATGCTCATTATACTTATTTCAAAGTGGGTTGGGGGGGACTGTGAGATCTGTGATTGTTGCTTTCTGATTCATGTTTTT GGTTCTGTATATCTGTACTGTCTCCAATTTCGGTGCTATGGAGCTTTCTATGTACCTGATGAGTGGCCATTTGGTATCTT GTTATGTTCTGCGTAAATAAATTATCCTCTCTCCGATTAATAAATCCATTTTTAAGCATCTTTTGAGAAAAAAAAACCGT ATGAAGATATTTAAACTAGAAATCAAGACTTTAAACTATACTGGCCTTTGTACTTATCACCAACACAAGCGCATGTATAT ATGTTGGAAATTCTCAAGATTCAAACAAATATGAGTTTTTGAAATCCAGGCAACAGAGTTATTCTTATCATATTCTAATA TTCCTTTTCTGAACCTTTTTGATAATGCTGGCATCCCCCACCCACTTTGGAGAGGTATATAGTATTCGAATTATCATGCA TGTAGAGTAAGTCTTTTGTTGAAAGTGGCTACTTGAAGGGTGTTACATTAATTTTGCAATGGCTTCATCATTCTGCTTAA TGTACATCTGTCAGTTTCTGAGTACGATTGAAATTAGCTACTAGGTTGACTTCCTGGTGTCTGCAGTTGTGGAACTAATG ACACATCCATTGATGGAAGAGAAAGAGATGTTTTTCAAGGATGATATGCTTTTGGCATCTATGATCTGATTATGTTATAT CTTCCTGCTGTTAGCATTTTTTGTTCCACCTGCTGTAGATGGCCTTTTTAGTTTTTAGGGCTGCTATTAATTACCTTGTG TCATTCTCTCTATATGAATCAGTATTTTTATCTGGTTTTAAATGTTCTTGTAATTACAAGATAAGGAAATAACATACACA TGCACATTTTACCAATATCATGAGTTTGTAATAAAAGCTTATTTTGAATCTAGTGTAGAGTTGTTAAAGAAGGGAAAAAA CTATCTTTGTTTTAAATTGTGAAGGATAATATCTTTTTATAGTAATACCTCACCTCTTGCCAGATTACATGTGACTTTGG ACTGTATATTTGGTGTGCAGCAGCTGATCCAGCAGATTCTGGGGTTTTAAAGTCCATAAAGTGCCTTAAAATTCCTGATA GCAAAAAGCTTGATGGACTGAAGGATTCTAAACTAGGAGAGGAGTCAACTTCACCAATGCATGATGGAATTATGATCATT GGAGCAGGGGTTGCCACGAATCTTTTTGTCATGCTGCTTGTGTGTATCTTTCTGTCATCATGGAGTCTTCAACTAGTCTT TTTCTCTGGTGATCCATTTGATAGACAATTAGGCTTGATCAGAAAGAGAGTCTTCATTAGTAACATTTTCCTTCGTCTCC TTGTTGTACATTAAACTGCTCTTGATCGTTTCATGGTGCTTACGGCAGTGTGGCAGTTGACAACATAAGACAAGGAGTCT TCCCAATAAAGTGATGTCAAAGGAGTCCTAAATGATCTAGACTTTCATTGCTACTCCTTTTTGGTAACAATGATTATGAT GGCAAACCTTTTTAAACCAAATCTACATATGTTCTTTTTGCGGTCTTCATGTTCAGGGTGTATAGGAAGCTTTCAATAGA TGATGTTCTTTAAAGTACTTTTTACATGATGTACTGTGTCTTTAAGGACCATACTCTGTCAGATGGTGACTTTCATCATG TTGTGTATCGTCTGGGAGTTGGTTGAGCTTTGTATTCCTTTGCATGTTGTACATACATCATTTTTTCTTGAGCTCGTAGT TGATATGACTCTGTAGAACTTTGATTTCATTGTTTCTTCAATCTTCCTTCGTTAGAGCTTGTCTCTCAAAGGGTAAATTT TTTTCAAGCTTATGTAGACATGTACTTTTCCTTATGAATGTTCTGATGTACTCTTCAGCATGCTTTGAATAGACGATCTT TCCTCGCATTGGCTTTGTGTTTATTGTAGTCTTCTGGATCTTCGTTAATGACATTTGATTGAG 

CDS sequence (LotjaGi1g1v0590900.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGATTTGGTGTTTGGAGGTTTTAAGGGATTGCTTGTGTATCCTTTATGGCGATTTATATGTTTGTGATGTTTGGCTTAT GAAGGAGTATGGCAATCAAGAGTCTTGGACTAAATTATTCAGTGTTCCTAGCCCGAGGGAGCTATTCGCCTATGATTCGG CACTTCATATTTCTGAGGATGACGAAATACTGCTGATGTTCAATTCAAACTTATTTCTCTACAATTCCAAAGACGGCACT TCAAGAAGTCCCCAAATTCAAAACATCCTTGGTTGGATAGTCCCAGAGGTCTATGTAGAAAGTTTGATATCACCTTAA 

Protein sequence (LotjaGi1g1v0590900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MIWCLEVLRDCLCILYGDLYVCDVWLMKEYGNQESWTKLFSVPSPRELFAYDSALHISEDDEILLMFNSNLFLYNSKDGT SRSPQIQNILGWIVPEVYVESLISP 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER 6 92 87 1.2E-14
PANTHER 6 92 87 1.2E-14

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0590900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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