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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0591000 |
| Transcript ID | LotjaGi1g1v0591000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box protein interaction domain protein; TAIR: AT4G12560.1 F-box and associated interaction domains-containing protein; Swiss-Prot: sp|Q9SU30|CPR30_ARATH F-box protein CPR30; TrEMBL-Plants: tr|G7IKD4|G7IKD4_MEDTR F-box protein interaction domain protein; Found in the gene: LotjaGi1g1v0591000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:113089692..113092930) extracted from Lotus japonicus Gifu genome v1.2.
CTCCAATGACGCCAAAAGATCATCACAATCGATCTCACATATGACATCCATATGATCACGACTCCAAACAAGAGAGAGAC CGCCCCTCATAGCATTTGCCTCACCCAAAAGGGGATTGCCCCCTATCCCGTAGGAGTGGAAGCCATACAACCATCGCCCA TGAGAATCAAGAGTTAAACCACCACCCCCATGCAGTTCTCTGGACGATAACTACCACCCACATTTAGTTTCACTTTACCC ATCGGAAGAGGGCTCCAATTCCTGCACATTGTCCGCCTCCATTCTATTGGGACCCAACAACCTAATGAACTCACCACACA AGGCCAAACTTCCTGAATCAGTATCCAAAAAATCATGTTATTTCTCCATTTCCACAAACCCCACAAAATCGCTAAGATCC TAATGGCGCTAGATAGCGACGCCGATGTCGTTTCATCTCCGCCGCGGACACGACAGCGGTTACTCCCTTGACCCTTCCAC TTCCGGCAACTCACTCCAAGCGCCGTTGTATCCAACCTTTCCGGTTGAGCTCGTCGTGGAAATCCTGTGCAAGCTCCTGT GAAGTCGCTGATACGATTCCGCTCTGTTAGTGCGTCCTGGAAATCCCTATTCTCTGATCCCAAATTCGCCAAAATGCACC TCCTCCGCTGTTCGCCATAGACGACAGACTTCACCCGCCACCGCCTCCTCCTAAACTACACCACCTCCTCACTCCCGTCA GACCATCTACGCGATTACTTTTACACGGCTCCTCTCCGTCTTCAACGCCGCCAATACTCCCCCCACCACACAGTTCAGGT ACAATCAAAACGGTTATCACACATTTATTGACTCTTGCAATGGCATCATCTGTTTGTATGCGGATTATATCAACTCTATC ATTCTAGGGACCCTTCCATTCAGAGTTACAAGGTCTTGCCATCTTTCGAATTTACAACGATATACGGATTTGGTTATCAT CATTCCACTGACACTTACAAAGTAGGTGCAGTTTCCTGCAATCCATGTGATAGTGGGGGTTGCCTAACATATAAAAGTAC CACTGAGCGTTACAAAACACAAGTCATGGTCCATACTTTGGGTACAGATTCTTGGAGGGAGATTCAAGAATTCCCTGAAT GTCTCCCTACCCCTTCGTCAGGAAGATTTGTCAGTGGCACTCTTAATTGGTCGGCATACGATGAGTCGTCGAATTGTTTG ATTCTTTCTCTTGATTTTGGGAATGAGTGTTATAAAAAAACTTTTGCCTCCTGATGGTGTAAGAGAGGTTGAGAGTTTCG CGGTGTTGAGGGATTGCTTGAGCTTCCTTTCTGGCGATCGCCACGTTTGTAATGTTTGGCTTATGAAGGAGTATGGAAAT CAAGACTCTTGGACTAAATTATTCAATATCGCCAAGGAATTCCCCATTGTCAGTGTAATTCAAGCACTCCATATTTCCGA GGATGATGAACTGCTGGTGAGGTTGGGGTCTAGGTCTAAGTTATTTCTCTACAATTTCAGAGACACCACTTCGAAAAGTC TCCGAATTCCGAGTAACCCTAGTTGGATCGGCTCGGGGGTCTATATAGAAAGTTTGATATCACCTTGCTTTTGATAGTAA GGATGCATGCAAATGGTATGTCTTCAATCCATTAACTGGACCTTACATGTTTTCATTTCATGTTTGTTCTAATTACTTCT GAATTCTGATCATTGTTTAGTGAAATTTTGCATTTCATTAGCTGGTCAATTTAGTATTATAAAATTGGAATTAGGATCTA GTTGTGATGTCATGTCACTATTATGCGTTTTCAATTTCACTTAACTGCTGCACAAATTTCATGTTTACTTCAAATCTTGG TTATTGCATTCTGCACTAAAAAAAATTATCATAATGAAGTTGATGTTTTATTTTTGTTACATGTTTATAATACCTGCTTG AAAACTTGTTTTGTTGGTTTTTGGATCACTAAAATAAGTATATATTTTTACTTCATTTTGCATATTTTCCACAATAATTT AGACTACCTTGTTCAATTATTCACAAGGTCAATAATTACACAGAAGATCGTTTTCTTCATTTCATCCTTTTGTGTTGCTT ATTTAGATCCTTTCACAAAAAATACTACATAAATATCTTCCTCCAGAGGTTTGCACTTTGTAGTAACTTGGAAACACAAC TTAATTAAGCGCTTATGGTCATAATCGCTTATGATATAAGCGCTTATTCATAAGCTATTTTTAAATATTTATTGAAATAA ATTGAGAATAAGCTATATATAAGAATAAGCTCTTTTTCATAAGCTATCATGAGTAGCTTATGAAAATAAGCTCAAAACAG CTTATGTAAGCCATAAGCTGTTTGCATAAGTTCTCCCAAACACTGGCATAAGAGCTTATGCTATCAGATAAGCTGAAATA AGCTCTTCCAAATGGGGCCTAGGAGCTTCTGTTTTGACTTTTCAAGACTTTTTTCAGGTGTGGGACTTGGGAGCGTGAGA ACTCATTCCTTAGGTATATTTTTCATGATGACCATGAGTAGTGGAAGATTTGACAGCAATGAAGCTGATACGAATACTAG GTGCAGTAAAACAAGTGAATTATCTCAGACTGTTTTATTTGGTATCTAGAAATGACTTTTTGAGTGGGAATTTTGGATTG ATAAACAGAACTACGGCCTGCATTTTAAGCAGTGCATTGTATAGTTGATAATAGCCTTTATTAGAACATAGATTTGCTTC AGACTTACTTCTAAGTCTGATTGTATAACCTTTACTCTCATTCTTGTTCTTTACTTAAGGAAATGGATCCCAAGAATGAA AGAACAATGGTTTGGTGCCAAAAGAACTGTTGAACCTCACATACCATTGTTGACTTCAAAAACCGTTGAAGTTTATGAGA CATCAAAATTTGAACATCAGTCGCTCGCATCAGGCGAAAAAGAAAAATAATGTGCCGACAAAAGAGTGTCTTGTTTCTTT TTGCTTTTAGATGGTTTTGATTATTTTCAAAAAGTGAACTCGTGACCTGCATTTTCCTTCTATTGTCATACGTTTATTTG TTTTTAAATCTTTCTGTATTATCATTGTCTTTATGATTGTTCTTTTCTCATAATGTTCTTATTCTTGTCATTGCACCTGA AGTTAGTAGTTCATGTAAATCTTAAAAGAGCCATTTTGTATTATTGTTTCTGGTTTATCAGTATTATTTCAGACTGTGGA TTCGTTCTTCCTTTATACCTGTCAATTGTCATACACGAG
CDS sequence (LotjaGi1g1v0591000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGTGTTATAAAAAAACTTTTGCCTCCTGATGGTGTAAGAGAGGTTGAGAGTTTCGCGGTGTTGAGGGATTGCTTGAG CTTCCTTTCTGGCGATCGCCACGTTTGTAATGTTTGGCTTATGAAGGAGTATGGAAATCAAGACTCTTGGACTAAATTAT TCAATATCGCCAAGGAATTCCCCATTGTCAGTGTAATTCAAGCACTCCATATTTCCGAGGATGATGAACTGCTGGTGAGG TTGGGGTCTAGGTCTAAGTTATTTCTCTACAATTTCAGAGACACCACTTCGAAAAGTCTCCGAATTCCGAGTAACCCTAG TTGGATCGGCTCGGGGGTCTATATAGAAAGTTTGATATCACCTTGCTTTTGA
Protein sequence (LotjaGi1g1v0591000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSVIKKLLPPDGVREVESFAVLRDCLSFLSGDRHVCNVWLMKEYGNQDSWTKLFNIAKEFPIVSVIQALHISEDDELLVR LGSRSKLFLYNFRDTTSKSLRIPSNPSWIGSGVYIESLISPCF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 18 | 110 | 93 | 1.6E-12 | – | |
| PANTHER | 18 | 110 | 93 | 1.6E-12 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0591000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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